Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0019240 | OGI:08069410 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:24897448-24900820 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagatcgaactcccaaaacctcttctgcggcggccgctttcgttagtcatcgccggccttccaaatgccgtcctccccgtggatccccaccgccggcgctccgccgccgcgggcagcgccggccgtggtctactcctggctgtcggagcgccaccctgtcaaggtatcgtgccttcccctctcggaccagcggtaatctcccttcgtctcgccgccccagctcgctgaacctaacacctagggtttctcgtctcacccgcgcaggaggcaggagcaggagcaggcgcttccaacgcgcaggagtccaggccccgcgtttctccggcggagaactcgtaaaatgcctcttgcatgcccctctccccacctttttcttggccgtttctgattttctgcaatgcgtgctttgtgtttgttatatttttttgaggtaattgtgtttgttatattgtcgccacgaatgattatctctgcaatttagatatttcagtaagcgaatgtgagcgcaagaaccagccattgtattagcttcgagccttcgagtcgatagtgctggtcttttgcttaattgctcgtctgtgacacggatgaagtgggcagtagttggttcatggttgatgtggtcgacttattgcttggaacatattggcaataagcaagatgaagtacaacagttttacctgcataattcgttatcttgtgcaagcacctgggtgtggtacttgaaatcttgaacaatgctgtgaacaagaaggaatggttaataatgatgcttttcatctggttagagaaaatagaaatgtgttgagttcaaaataaaataggggttacataaaaaaaatgggggcgacctactttttttctgaacagaaatcacctcccttccaaatcagtttggtctatctggtcctctactgataactgccttctaaattcccatttccacctctcctctgaccacatcccattgacagtcctcccctgcttcctgcttatgctatataacttgggaaacaacactttcagaggcactgctccacaccacacatcatcccagaattgggcatgattcccattcccaacctctctcacaactaacttacttacccactgattgcaaaccccacaagcagagcccctggccttgattttttgtattttgttttcaatagtaaccaactttatttgatctgctaaaatgaaaatgcatgtttccaattccaacaattgtgttgaattgttttgtatatcttcttcttggtcaaatgatttggagttgtgaacctgtatattcttaatttgtagttaagttcctgattagtgacctgggcaaataatggattcatatagtaaacattattgtattactttgcatagtgaagtggaaacccgagagcatgaagagaaggtcaacaaatatcaggctgtccttgcagctcgtttgaaggccaaatacttttctggcaaggcttttggtaaaggtaccagtgcactccaatcttatgacaatagtatggcatggcatattatggtttacagaagatttgcttgtttgttcaggcagtcagatatctgcctggttagattatcttttttttttaaaaaaaaaaactttgatatctaatagatcatttcctgcatgttagcttagaagaaagctcaactgtatggttcaacaattgacatggaatcttcaaatggtctgagtcatgatccactaaatcaacaaacacaattagtctgtgtcatgttttggccttgagatgcaacctgtcattactaaaagatatttatattattgaatccaagatatgctaagttgactatcctaacaatcatctcgaagaaatgcattaatatgccttccttactttgtaaggatagccagtgaccagatgtggtagtagagtttgcctttttgttttcttactaatgaattaacttcaagtgatagtttttttccccgtattgacaatgattttttttttaacgtttcaccatttggtggacagaaaatgtgtttgaagaaatgactatccagtctgagaccattctgttaagcaggtgagttgtcttcgctatttgtgtgtttttccaatattgttctaaaatttcatcataagaaccattttccttttgtttcctaggtgcccgttttcaagtttatttgcagatccagcaaaattttgccgggagaagagctgtactaaagaggacatttatccatctttgacaaatgcctcctttgccaagcataaccatttatctctagttcgtgaagactcgtcgaagtaattagcggacagtttgtctgcagaaaactcttaacacctgccaagtggcacctgtctatcaataccacctaatggatgagggttgggtagttacattattaactacatatgttatccttaaactaaatgaactgaaacatgtaaaatatcaacaggcctaatttaacttgagagtttagtttcttcttgtaggcctgttgagcatatagatagctatgaacttaactctatgcaaaacaatgctcatattgagattattcctctagggggatgtctccaacattttacctgtcaccatagtactcacatgcatgatctttgcatatttttttattgttccttttctacagagtgctgttattttgtagggtactagtatcttgaactttctatattccgtttgtagtaccaacattccagggcctccattgccgattattccggtgcatctgtcaacatacatggcaagcttcatctgcaagtgcccctggaatcatggtggacagatgtatgaccaaacacacctgaactgcatctgcagccattcttatcttcgtgcaactgtacctgctaacctgcaccaggtaaaatagctcctatgagcgacggtttgttgaggtgctcttgtactttccagttgtttcctcatatttgcaaaagagatctccattgccaccaccgtgagacattgcatggtgcactggtgcttcttccaccgtgcgccgcacaagggcaggggccatgcccttttaaccactgtttgcttgggtcctgcgatgtgagcgtccaactatggtggggcctttctccctcaggttcacacgtagtaccctggactggacatcctttggctgataccgcacttgcaatggcaaatgcatcaccggtctctagatttgttttttttagttctgatctggtgcacagctgccgttcctatcttcagcaacacaatttgcaatagaaatgtacctccttttcttttcctttactgtggaaaatgagttaatatatgtacgacatcctatgttaatatttgatattgggattctgtgagatcctgcacatctttgagacc
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| CDS seq | atgccgtcctccccgtggatccccaccgccggcgctccgccgccgcgggcagcgccggccgtggtctactcctggctgtcggagcgccaccctgtcaaggaggcaggagcaggagcaggcgcttccaacgcgcaggagtccaggccccgcgtttctccggcggagaactctgaagtggaaacccgagagcatgaagagaaggtcaacaaatatcaggctgtccttgcagctcgtttgaaggccaaatacttttctggcaaggcttttggtaaagaaaatgtgtttgaagaaatgactatccagtctgagaccattctgttaagcaggtgcccgttttcaagtttatttgcagatccagcaaaattttgccgggagaagagctgtactaaagaggacatttatccatctttgacaaatgcctcctttgccaagcataaccatttatctctagttcgtgaagactcgtcgaagtaa
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| Protein seq | MPSSPWIPTAGAPPPRAAPAVVYSWLSERHPVKEAGAGAGASNAQESRPRVSPAENSEVETREHEEKVNKYQAVLAARLKAKYFSGKAFGKENVFEEMTIQSETILLSRCPFSSLFADPAKFCREKSCTKEDIYPSLTNASFAKHNHLSLVREDSSK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0019240 | OsLima_08g0019240.01 | Chr08 | 24897448 | 24900815 | + | NAM | ||
| CDS seq | atgccgtcctccccgtggatccccaccgccggcgctccgccgccgcgggcagcgccggccgtggtctactcctggctgtcggagcgccaccctgtcaaggaggcaggagcaggagcaggcgcttccaacgcgcaggagtccaggccccgcgtttctccggcggagaactctgaagtggaaacccgagagcatgaagagaaggtcaacaaatatcaggctgtccttgcagctcgtttgaaggccaaatacttttctggcaaggcttttggtaaagaaaatgtgtttgaagaaatgactatccagtctgagaccattctgttaagcaggtgcccgttttcaagtttatttgcagatccagcaaaattttgccgggagaagagctgtactaaagaggacatttatccatctttgacaaatgcctcctttgccaagcataaccatttatctctagttcgtgaagactcgtcgaagtaa
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| Protein seq | MPSSPWIPTAGAPPPRAAPAVVYSWLSERHPVKEAGAGAGASNAQESRPRVSPAENSEVETREHEEKVNKYQAVLAARLKAKYFSGKAFGKENVFEEMTIQSETILLSRCPFSSLFADPAKFCREKSCTKEDIYPSLTNASFAKHNHLSLVREDSSK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0019240 | OsLima_08g0019240.02 | Chr08 | 24897513 | 24900820 | + | NAM | ||
| CDS seq | atgccgtcctccccgtggatccccaccgccggcgctccgccgccgcgggcagcgccggccgtggtctactcctggctgtcggagcgccaccctgtcaaggtatcgtgccttcccctctcggaccagcggaggcaggagcaggagcaggcgcttccaacgcgcaggagtccaggccccgcgtttctccggcggagaactcaaaatgtgtttgaagaaatgactatccagtctgagaccattctgttaagcaggtgcccgttttcaagtttatttgcagatccagcaaaattttgccgggagaagagctgtactaaagaggacatttatccatctttgacaaatgcctcctttgccaagcataaccatttatctctagttcgtgaagactcgtcgaagtaa
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| Protein seq | MPSSPWIPTAGAPPPRAAPAVVYSWLSERHPVKVSCLPLSDQRRQEQEQALPTRRSPGPAFLRRRTQNVFEEMTIQSETILLSRCPFSSLFADPAKFCREKSCTKEDIYPSLTNASFAKHNHLSLVREDSSK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr08 | 24897783 | 24899461 | + | OsLima_08g0019240.01 | OsLima_08g0019240.02,OsLima_08g0019240.01 | All |
| A5 | Chr08 | 24897611 | 24897713 | + | OsLima_08g0019240.02 | OsLima_08g0019240.02,OsLima_08g0019240.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.188561 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0487000 | RBH | 0.113926 | 0.0 | 1.621544 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g38010 | RBH | 0.076864 | 0.0 | 0.417354 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0487000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0020150 | RBH | 0.117778 | 0.0 | 0.583353 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0020050 | RBH | 0.0 | 0.000000 | 0.686384 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0019940 | RBH | 0.577944 | 0.0 | 1.507923 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0020140 | RBH | 0.0 | 0.091424 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0020030 | RBH | 0.000000 | 6.410455 | 3.493995 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0383100 | RBH | 0.4112185 | 0.947656 | 1.628968 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0019950 | RBH | 0.0 | 0.0 | 0.304536 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0403100 | RBH | 1.703205 | 2.954409 | 15.445849 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0013860 | RBH | 0.111356 | 0.271235 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0019510 | RBH | 0.000000 | 3.734283 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0019380 | RBH | 1.133044 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0020210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0019570 | RBH | 0.073061 | 0.858086 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G019750 | RBH | 0.097321 | 0.552096 | 1.100186 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0019880 | RBH | 0.000000 | 0.884449 | 1.936390 |
