Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0023010 | OGI:08007510 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:27828944-27831979 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtctcgctttggggcgcaatcttggagcgaagtggtccgcaaagagccgacacggacggcacatcccaagcagctcgaggacgcggagggtcactggactgaggtccggcgcaagggcagacagcattcatggcggtccagcgaccaccaattttccacccaccagcggccggcattgaaggcgtcaaaacccgttcctcgctggctacaagggcggtgtttcaagtgcctaggtctaggccatcagaagacaacttgcttcaggcagacacggtgctacaactgttggttcaccggccatctcgctcgcagctgtccgagcagccatccggccgaaagggagcgcgacaaggggaagggaagggaggagccaaagcctgctggcggggtgactgtcaaggcggcggcgaggccccagcaggcgcgtgtgacgctccctgccgctgcggggcgtcgggtgatcctcgcgcgcgcggcgggcgacggaccggcgagggaggcggcgggtgctgtcaggaaggcagcgccggcggaggagacgaggtcgacgccgactgcatcgcaggccactgccgcgaccgccgtgcacgccgaccgcgacgcaggacaacctgccgcggtcaccgacatggctggtttccagatctgcgtgcggcagccttcgtacctcaggaaggagtgtcgcacgggggatccggatctgcgtcccgggagaggtcattgcacgatctcgtggacgccgaggatggtggagaacgagaccatgctggagaggaagggcctcctcgcctcggtacttggcacacaaccgcacgtctcccctcaggagatggtcgaggtggtggtgaactgcggcgtcctcccgtccaacttccgtgtcgaggtcaccaccccagaagactacctcatcatgttccgcaacactagggatcgtgactgggtgcttagccgatccaaggaggtcttctgcaaggaggcggccatctccttcaagcgatgggataggcggttgcaggcggatagcaccaagatgcagttcttcaccaagttatcgctggaggggctgccgcagcacgcctgggaagaggaagcggtcgctcagatcgtgcgcgagctcaggggtgagctggtggagatggtcacgccggcggacgctagggtgctcacgttatttgcgtggctctccaaccctagcatggtgccgtcggtgctggaggtggaaatcccagagcgggcggccggcgggccgccgcgctgggagaggttcctaggtcgcacttcgatccccagagcgccgctctacaagaaatccctaacttatgcgctcatcgtgcacatcgaggagatcattgaccccacgccactccactacacctcctacatgggttccgatgatgatgacaacggcgacgtgccgcggcgcgtgaccttctcctgttgggcgggtcgaacagacggcacaggcccctggtcgtctgaacaaggcggcggtcgttctttcggtggtgcatctggggctgcgggcggacttccagggcgcgtctggtccacgacggatcggattgccgccaaaccggcggaggcagtgagggtagacgaagtcgtggtggcggggctggcgcaggggacggggatcgatgttggggatggtggactggcggcggcggacgctgcggcgagcgacattgcgacgagagaccctgtgtagatgaggccaggttccctggaactgactggtggtggtggtggagggatctggttctcgccacagttgttgccgcggacgcaagcggactcgcggctgggagacgagtccgtgccggcgacatgtcaaactgctggagatgcgccggaggctgctcttttgctggctgctcaatcaaacatggcagatgactcttggggccttccgacggtggtgatcccaggaggaagccctatttcgctttccatggaggagcacgaaggcggtggcgtcgctgtgtcgcagacctcgtcggcggcaccggtgactgagggggggcacggagtcggtgttcaaccacctgctgacgaggcgaatggggagccaacggggatggatccatctgtggtttcagtggacgcggtgcagggcgcgccacacgaggagcctgtcatgagcggcatgggcatgcaacctgcgtctgcacctgccggtctgtgttcacattggtctgcagcactgggcgctgtagccaagaagctacagtttgaagatcttgtcaaggatacgcaggagaatggggctgcattaatggcggtctcggcggtgctggaggatggggaaccggagagcgttggcgggaacgctgaacgggcgatgccgcttgaagaactgaatcctccgtgtaaggagtcgtcggcttctgggccagaacgtgccctgggcccggacgctgaccagggacaaaacggcccgtggccaggaggcgatagcgggccggctgagctggcctctcggccgctagctgggccgcaagacctggtgcagactgggtcaccattggaagctacttcgactggcccgctactggttgctgggctgccgctggtctacggaagacggcgggatgggccgccgcagcctgcgcacgcggatgagcgactacaggacttcctcgactcgatctcagcaacgccgccagcctcggtcctgagcgtgcggccacctgcatctgttccgaccacaagcacgcgtagcaatcgtcgcaacgtcatcccgccggacttcactccttggcggagcccgaggttccaacagcagggctcgggggcgcggcgccacaccatcactaaggcgaaggcggtgaacatgaagaagctggggattattcaagagaaagaggaggcgacggaggactcggtgaagaagtacctgaatttattcgaaaaaccgctctctacccaacacgtggaggccctggcgacattgcttgatgtggacattgctgcccagcctctcgagctcactgattgcagcgagggagttgccgccgtcgcttcgccagcctga
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| CDS seq | atgtctcgctttggggcgcaatcttggagcgaagtggtccgcaaagagccgacacggacggcacatcccaagcagctcgaggacgcggagggtcactggactgaggtccggcgcaagggcagacagcattcatggcggtccagcgaccaccaattttccacccaccagcggccggcattgaaggcgtcaaaacccgttcctcgctggctacaagggcggtgtttcaagtgcctaggtctaggccatcagaagacaacttgcttcaggcagacacggtgctacaactgttggttcaccggccatctcgctcgcagctgtccgagcagccatccggccgaaagggagcgcgacaaggggaagggaagggaggagccaaagcctgctggcggggtgactgtcaaggcggcggcgaggccccagcaggcgcgtgtgacgctccctgccgctgcggggcgtcgggtgatcctcgcgcgcgcggcgggcgacggaccggcgagggaggcggcgggtgctgtcaggaaggcagcgccggcggaggagacgaggtcgacgccgactgcatcgcaggccactgccgcgaccgccgtgcacgccgaccgcgacgcaggacaacctgccgcggtcaccgacatggctggtttccagatctgcgtgcggcagccttcgtacctcaggaaggagtgtcgcacgggggatccggatctgcgtcccgggagaggtcattgcacgatctcgtggacgccgaggatggtggagaacgagaccatgctggagaggaagggcctcctcgcctcggtacttggcacacaaccgcacgtctcccctcaggagatggtcgaggtggtggtgaactgcggcgtcctcccgtccaacttccgtgtcgaggtcaccaccccagaagactacctcatcatgttccgcaacactagggatcgtgactgggtgcttagccgatccaaggaggtcttctgcaaggaggcggccatctccttcaagcgatgggataggcggttgcaggcggatagcaccaagatgcagttcttcaccaagttatcgctggaggggctgccgcagcacgcctgggaagaggaagcggtcgctcagatcgtgcgcgagctcaggggtgagctggtggagatggtcacgccggcggacgctagggtgctcacgttatttgcgtggctctccaaccctagcatggtgccgtcggtgctggaggtggaaatcccagagcgggcggccggcgggccgccgcgctgggagaggttcctaggtcgcacttcgatccccagagcgccgctctacaagaaatccctaacttatgcgctcatcgtgcacatcgaggagatcattgaccccacgccactccactacacctcctacatgggttccgatgatgatgacaacggcgacgtgccgcggcgcgtgaccttctcctgttgggcgggtcgaacagacggcacaggcccctggtcgtctgaacaaggcggcggtcgttctttcggtggtgcatctggggctgcgggcggacttccagggcgcgtctggtccacgacggatcggattgccgccaaaccggcggaggcattgttgccgcggacgcaagcggactcgcggctgggagacgagtccgtgccggcgacatgtcaaactgctggagatgcgccggaggctgctcttttgctggctgctcaatcaaacatggcagatgactcttggggccttccgacggtggtgatcccaggaggaagccctatttcgctttccatggaggagcacgaaggcggtggcgtcgctgtgtcgcagacctcgtcggcggcaccggtgactgagggggggcacggagtcggtgttcaaccacctgctgacgaggcgaatggggagccaacggggatggatccatctgtggtttcagtggacgcggtgcagggcgcgccacacgaggagcctgtcatgagcggcatgggcatgcaacctgcgtctgcacctgccggtctgtgttcacattggtctgcagcactgggcgctgtagccaagaagctacagtttgaagatcttgtcaaggatacgcaggagaatggggctgcattaatggcggtctcggcggtgctggaggatggggaaccggagagcgttggcgggaacgctgaacgggcgatgccgcttgaagaactgaatcctccgtgtaaggagtcgtcggcttctgggccagaacgtgccctgggcccggacgctgaccagggacaaaacggcccgtggccaggaggcgatagcgggccggctgagctggcctctcggccgctagctgggccgcaagacctggtgcagactgggtcaccattggaagctacttcgactggcccgctactggttgctgggctgccgctggtctacggaagacggcgggatgggccgccgcagcctgcgcacgcggatgagcgactacaggacttcctcgactcgatctcagcaacgccgccagcctcggtcctgagcgtgcggccacctgcatctgttccgaccacaagcacgcgtagcaatcgtcgcaacgtcatcccgccggacttcactccttggcggagcccgaggttccaacagcagggctcgggggcgcggcgccacaccatcactaaggcgaaggcggtgaacatgaagaagctggggattattcaagagaaagaggaggcgacggaggactcggtgaagaagtacctgaatttattcgaaaaaccgctctctacccaacacgtggaggccctggcgacattgcttgatgtggacattgctgcccagcctctcgagctcactgattgcagcgagggagttgccgccgtcgcttcgccagcctga
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| Protein seq | MSRFGAQSWSEVVRKEPTRTAHPKQLEDAEGHWTEVRRKGRQHSWRSSDHQFSTHQRPALKASKPVPRWLQGRCFKCLGLGHQKTTCFRQTRCYNCWFTGHLARSCPSSHPAERERDKGKGREEPKPAGGVTVKAAARPQQARVTLPAAAGRRVILARAAGDGPAREAAGAVRKAAPAEETRSTPTASQATAATAVHADRDAGQPAAVTDMAGFQICVRQPSYLRKECRTGDPDLRPGRGHCTISWTPRMVENETMLERKGLLASVLGTQPHVSPQEMVEVVVNCGVLPSNFRVEVTTPEDYLIMFRNTRDRDWVLSRSKEVFCKEAAISFKRWDRRLQADSTKMQFFTKLSLEGLPQHAWEEEAVAQIVRELRGELVEMVTPADARVLTLFAWLSNPSMVPSVLEVEIPERAAGGPPRWERFLGRTSIPRAPLYKKSLTYALIVHIEEIIDPTPLHYTSYMGSDDDDNGDVPRRVTFSCWAGRTDGTGPWSSEQGGGRSFGGASGAAGGLPGRVWSTTDRIAAKPAEALLPRTQADSRLGDESVPATCQTAGDAPEAALLLAAQSNMADDSWGLPTVVIPGGSPISLSMEEHEGGGVAVSQTSSAAPVTEGGHGVGVQPPADEANGEPTGMDPSVVSVDAVQGAPHEEPVMSGMGMQPASAPAGLCSHWSAALGAVAKKLQFEDLVKDTQENGAALMAVSAVLEDGEPESVGGNAERAMPLEELNPPCKESSASGPERALGPDADQGQNGPWPGGDSGPAELASRPLAGPQDLVQTGSPLEATSTGPLLVAGLPLVYGRRRDGPPQPAHADERLQDFLDSISATPPASVLSVRPPASVPTTSTRSNRRNVIPPDFTPWRSPRFQQQGSGARRHTITKAKAVNMKKLGIIQEKEEATEDSVKKYLNLFEKPLSTQHVEALATLLDVDIAAQPLELTDCSEGVAAVASPA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0023010 | OsLima_08g0023010.01 | Chr08 | 27828944 | 27831979 | + | NAM | ||
| CDS seq | atgtctcgctttggggcgcaatcttggagcgaagtggtccgcaaagagccgacacggacggcacatcccaagcagctcgaggacgcggagggtcactggactgaggtccggcgcaagggcagacagcattcatggcggtccagcgaccaccaattttccacccaccagcggccggcattgaaggcgtcaaaacccgttcctcgctggctacaagggcggtgtttcaagtgcctaggtctaggccatcagaagacaacttgcttcaggcagacacggtgctacaactgttggttcaccggccatctcgctcgcagctgtccgagcagccatccggccgaaagggagcgcgacaaggggaagggaagggaggagccaaagcctgctggcggggtgactgtcaaggcggcggcgaggccccagcaggcgcgtgtgacgctccctgccgctgcggggcgtcgggtgatcctcgcgcgcgcggcgggcgacggaccggcgagggaggcggcgggtgctgtcaggaaggcagcgccggcggaggagacgaggtcgacgccgactgcatcgcaggccactgccgcgaccgccgtgcacgccgaccgcgacgcaggacaacctgccgcggtcaccgacatggctggtttccagatctgcgtgcggcagccttcgtacctcaggaaggagtgtcgcacgggggatccggatctgcgtcccgggagaggtcattgcacgatctcgtggacgccgaggatggtggagaacgagaccatgctggagaggaagggcctcctcgcctcggtacttggcacacaaccgcacgtctcccctcaggagatggtcgaggtggtggtgaactgcggcgtcctcccgtccaacttccgtgtcgaggtcaccaccccagaagactacctcatcatgttccgcaacactagggatcgtgactgggtgcttagccgatccaaggaggtcttctgcaaggaggcggccatctccttcaagcgatgggataggcggttgcaggcggatagcaccaagatgcagttcttcaccaagttatcgctggaggggctgccgcagcacgcctgggaagaggaagcggtcgctcagatcgtgcgcgagctcaggggtgagctggtggagatggtcacgccggcggacgctagggtgctcacgttatttgcgtggctctccaaccctagcatggtgccgtcggtgctggaggtggaaatcccagagcgggcggccggcgggccgccgcgctgggagaggttcctaggtcgcacttcgatccccagagcgccgctctacaagaaatccctaacttatgcgctcatcgtgcacatcgaggagatcattgaccccacgccactccactacacctcctacatgggttccgatgatgatgacaacggcgacgtgccgcggcgcgtgaccttctcctgttgggcgggtcgaacagacggcacaggcccctggtcgtctgaacaaggcggcggtcgttctttcggtggtgcatctggggctgcgggcggacttccagggcgcgtctggtccacgacggatcggattgccgccaaaccggcggaggcattgttgccgcggacgcaagcggactcgcggctgggagacgagtccgtgccggcgacatgtcaaactgctggagatgcgccggaggctgctcttttgctggctgctcaatcaaacatggcagatgactcttggggccttccgacggtggtgatcccaggaggaagccctatttcgctttccatggaggagcacgaaggcggtggcgtcgctgtgtcgcagacctcgtcggcggcaccggtgactgagggggggcacggagtcggtgttcaaccacctgctgacgaggcgaatggggagccaacggggatggatccatctgtggtttcagtggacgcggtgcagggcgcgccacacgaggagcctgtcatgagcggcatgggcatgcaacctgcgtctgcacctgccggtctgtgttcacattggtctgcagcactgggcgctgtagccaagaagctacagtttgaagatcttgtcaaggatacgcaggagaatggggctgcattaatggcggtctcggcggtgctggaggatggggaaccggagagcgttggcgggaacgctgaacgggcgatgccgcttgaagaactgaatcctccgtgtaaggagtcgtcggcttctgggccagaacgtgccctgggcccggacgctgaccagggacaaaacggcccgtggccaggaggcgatagcgggccggctgagctggcctctcggccgctagctgggccgcaagacctggtgcagactgggtcaccattggaagctacttcgactggcccgctactggttgctgggctgccgctggtctacggaagacggcgggatgggccgccgcagcctgcgcacgcggatgagcgactacaggacttcctcgactcgatctcagcaacgccgccagcctcggtcctgagcgtgcggccacctgcatctgttccgaccacaagcacgcgtagcaatcgtcgcaacgtcatcccgccggacttcactccttggcggagcccgaggttccaacagcagggctcgggggcgcggcgccacaccatcactaaggcgaaggcggtgaacatgaagaagctggggattattcaagagaaagaggaggcgacggaggactcggtgaagaagtacctgaatttattcgaaaaaccgctctctacccaacacgtggaggccctggcgacattgcttgatgtggacattgctgcccagcctctcgagctcactgattgcagcgagggagttgccgccgtcgcttcgccagcctga
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| Protein seq | MSRFGAQSWSEVVRKEPTRTAHPKQLEDAEGHWTEVRRKGRQHSWRSSDHQFSTHQRPALKASKPVPRWLQGRCFKCLGLGHQKTTCFRQTRCYNCWFTGHLARSCPSSHPAERERDKGKGREEPKPAGGVTVKAAARPQQARVTLPAAAGRRVILARAAGDGPAREAAGAVRKAAPAEETRSTPTASQATAATAVHADRDAGQPAAVTDMAGFQICVRQPSYLRKECRTGDPDLRPGRGHCTISWTPRMVENETMLERKGLLASVLGTQPHVSPQEMVEVVVNCGVLPSNFRVEVTTPEDYLIMFRNTRDRDWVLSRSKEVFCKEAAISFKRWDRRLQADSTKMQFFTKLSLEGLPQHAWEEEAVAQIVRELRGELVEMVTPADARVLTLFAWLSNPSMVPSVLEVEIPERAAGGPPRWERFLGRTSIPRAPLYKKSLTYALIVHIEEIIDPTPLHYTSYMGSDDDDNGDVPRRVTFSCWAGRTDGTGPWSSEQGGGRSFGGASGAAGGLPGRVWSTTDRIAAKPAEALLPRTQADSRLGDESVPATCQTAGDAPEAALLLAAQSNMADDSWGLPTVVIPGGSPISLSMEEHEGGGVAVSQTSSAAPVTEGGHGVGVQPPADEANGEPTGMDPSVVSVDAVQGAPHEEPVMSGMGMQPASAPAGLCSHWSAALGAVAKKLQFEDLVKDTQENGAALMAVSAVLEDGEPESVGGNAERAMPLEELNPPCKESSASGPERALGPDADQGQNGPWPGGDSGPAELASRPLAGPQDLVQTGSPLEATSTGPLLVAGLPLVYGRRRDGPPQPAHADERLQDFLDSISATPPASVLSVRPPASVPTTSTRSNRRNVIPPDFTPWRSPRFQQQGSGARRHTITKAKAVNMKKLGIIQEKEEATEDSVKKYLNLFEKPLSTQHVEALATLLDVDIAAQPLELTDCSEGVAAVASPA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0198800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g36660 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0198800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006570 | SBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0010460 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006640 | SBH | 0.0 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0013820 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0024620 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024450 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0292600 | SBH | 0.016549 | 0.036821 | 0.038794 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017950 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024180 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024000 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0047760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023460 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0024480 | SBH | 0.0 | 0.0 | 0.0 |
