Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0012890 | OGI:08048580 | 5/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:16847751-16848141 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaccttgttccatatctccgccgcataccgcccgtaggtgcgttgatgcatgcctcgatataataggtgatggcaaaagtctctgggacaagaagaaatcaatgaaagaaagacaaagaggtggtggttgcaaagaagggcaataaagcaggacggcggctggcgagcaagccccgtttccgaacatccgccagcgtacctacgggcggtgggcggccgagataagggacaacgtcatcgacagcgcccgcgtgtggattggcaccttcgacacggcggaggaggcagcgctggcctacaacgccacagcgcgcaggatctacggcagcaaggccaggaccaacttccccaccacctgtgccagcgacgacgacccgcccggctgttga |
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| CDS seq | atgaccttgttccatatctccgccgcataccgcccgacggcggctggcgagcaagccccgtttccgaacatccgccagcgtacctacgggcggtgggcggccgagataagggacaacgtcatcgacagcgcccgcgtgtggattggcaccttcgacacggcggaggaggcagcgctggcctacaacgccacagcgcgcaggatctacggcagcaaggccaggaccaacttccccaccacctgtgccagcgacgacgacccgcccggctgttga |
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| Protein seq | MTLFHISAAYRPTAAGEQAPFPNIRQRTYGRWAAEIRDNVIDSARVWIGTFDTAEEAALAYNATARRIYGSKARTNFPTTCASDDDPPGC |
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| Function | Ethylene-responsive transcription factor ERF073 [UniProtKB/Swiss-Prot:Q8H0T5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0012890 | OsLima_08g0012890.01 | Chr08 | 16847751 | 16848141 | + | NAM | ||
| CDS seq | atgaccttgttccatatctccgccgcataccgcccgacggcggctggcgagcaagccccgtttccgaacatccgccagcgtacctacgggcggtgggcggccgagataagggacaacgtcatcgacagcgcccgcgtgtggattggcaccttcgacacggcggaggaggcagcgctggcctacaacgccacagcgcgcaggatctacggcagcaaggccaggaccaacttccccaccacctgtgccagcgacgacgacccgcccggctgttga
More
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| Protein seq | MTLFHISAAYRPTAAGEQAPFPNIRQRTYGRWAAEIRDNVIDSARVWIGTFDTAEEAALAYNATARRIYGSKARTNFPTTCASDDDPPGC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0408500 | SBH | 1.917984 | 4.590199 | 5.815153 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g27220 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0408500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0023700 | SBH | 0.277844 | 3.163524 | 4.085665 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0025600 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023490 | SBH | 0.638714 | 2.326997 | 6.002275 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0025850 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0013380 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0258700 | RBH | 0 | 0 | 0.194097 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0013420 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0279600 | SBH | 0.018951 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0005330 | RBH | 0.324427 | 0.027840 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023000 | SBH | 0.337112 | 3.482407 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013630 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0022990 | SBH | 0.000000 | 5.692369 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G025330 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0023310 | SBH | 0.268350 | 14.620687 | 2.170882 |
