Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0005330 | OGI:09025260 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:9307253-9308648 | ||||||||
| Gene Symbol | ERF109, OsERF#109, OsERF109, AP2/EREBP#063, AP2/EREBP63, DLN223, OsDLN223 | ||||||||||
| DNA seq | aacaacaaaaattaatcatttttgttcaacaatgaactattcttagctgttcattgcctaaaattagtaaggttatttacaataactggattttaataggcctatatttacatttgtacataacttcagaatcacaagaacaatatcaaaattaacaaatataataatggcgtccaacaaatacacaaccaaactgagatcaaggacggtctgtcaccacaatctcattaacatttttgagattggtgaacatatacataaatactgcggtactcatttgtttgctgtagggggactctacaattttccggcaaaattggagatgaaaatctccagatcatacactcgccctgccagcaatgtgaaagatggatacctgaatctacctcctgcactcaattcaatcaacaagaggttttcacatagaacaggattcaagccatcaaagacagttgagttcttgttccaatgaagcaaagtcgaacccgtcccagttgagttctgcatcgaggtcgaacttcagatctgtgataggcagcggcaggtggctgatgtctgcaaggccaatgtaatcatcgcccagtggcacatctgccatgccgataaaatcactaactgggaacgcatctgcaagcctagtgaaatcatcaggtggaaattcatcaatatggcccacacagttgctcacaggaatctcatctatcctgccaagaacagcgcccatcgaaatctctttgcctttaggcgtggacggcaagttcagcaagtgctcatcctcagtctcatggctaatcttcactgacaCTctcttctgcacttctggctgtgccttaatcttctgagcttgtggctgtgccttaaacttctgctcaacggtctcacggttaaccaccactgacactctcttgtgttcttgtggctttgcctgaatcttctggtcacatgactgagatgaggacacgcaggatatagtaacagagcttgacaaatcttcctgctctgatacagaagattggattttcaaggccatcaactcttcatggaactggtttgattgtgcaagatatgccgcagcggcctcctcctcactgttaaatgtgccaatccatttccttgattttctcacagggtcacgtatttctgcagcccatttgccccacgcccgccggcgcacacccctgtatttgctcgtcggttccttctcagaatcctttacagtctttgtgccacattgaacaagggtcttaacaggtttggatgccttggagttttccattggaattagtatttcccttgaaaatctcctttccttCttattctggtcatcttcatcagaggagtcagtggcatcaggatcagagcagaaaacacggactttccgtgaagagggcaccat
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| CDS seq | atggtgccctcttcacggaaagtccgtgttttctgctctgatcctgatgccactgactcctctgatgaagatgaccagaataaGaaggaaaggagattttcaagggaaatactaattccaatggaaaactccaaggcatccaaacctgttaagacccttgttcaatgtggcacaaagactgtaaaggattctgagaaggaaccgacgagcaaatacaggggtgtgcgccggcgggcgtggggcaaatgggctgcagaaatacgtgaccctgtgagaaaatcaaggaaatggattggcacatttaacagtgaggaggaggccgctgcggcatatcttgcacaatcaaaccagttccatgaagagttgatggccttgaaaatccaatcttctgtatcagagcaggaagatttgtcaagctctgttactatatcctgcgtgtcctcatctcagtcatgtgaccagaagattcaggcaaagccacaagaacacaagagagtgtcagtggtggttaaccgtgagaccgttgagcagaagtttaaggcacagccacaagctcagaagattaaggcacagccagaagtgcagaagagAGtgtcagtgaagattagccatgagactgaggatgagcacttgctgaacttgccgtccacgcctaaaggcaaagagatttcgatgggcgctgttcttggcaggatagatgagattcctgtgagcaactgtgtgggccatattgatgaatttccacctgatgatttcactaggcttgcagatgcgttcccagttagtgattttatcggcatggcagatgtgccactgggcgatgattacattggccttgcagacatcagccacctgccgctgcctatcacagatctgaagttcgacctcgatgcagaactcaactgggacgggttcgactttgcttcattggaacaagaactcaactgtctttga
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| Protein seq | MVPSSRKVRVFCSDPDATDSSDEDDQNKKERRFSREILIPMENSKASKPVKTLVQCGTKTVKDSEKEPTSKYRGVRRRAWGKWAAEIRDPVRKSRKWIGTFNSEEEAAAAYLAQSNQFHEELMALKIQSSVSEQEDLSSSVTISCVSSSQSCDQKIQAKPQEHKRVSVVVNRETVEQKFKAQPQAQKIKAQPEVQKRVSVKISHETEDEHLLNLPSTPKGKEISMGAVLGRIDEIPVSNCVGHIDEFPPDDFTRLADAFPVSDFIGMADVPLGDDYIGLADISHLPLPITDLKFDLDAELNWDGFDFASLEQELNCL |
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| Function | Ethylene-responsive transcription factor ERF118 [UniProtKB/Swiss-Prot:Q9CA27] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0005330 | OsLima_09g0005330.01 | Chr09 | 9307253 | 9308648 | - | NAM | ||
| CDS seq | atggtgccctcttcacggaaagtccgtgttttctgctctgatcctgatgccactgactcctctgatgaagatgaccagaataaGaaggaaaggagattttcaagggaaatactaattccaatggaaaactccaaggcatccaaacctgttaagacccttgttcaatgtggcacaaagactgtaaaggattctgagaaggaaccgacgagcaaatacaggggtgtgcgccggcgggcgtggggcaaatgggctgcagaaatacgtgaccctgtgagaaaatcaaggaaatggattggcacatttaacagtgaggaggaggccgctgcggcatatcttgcacaatcaaaccagttccatgaagagttgatggccttgaaaatccaatcttctgtatcagagcaggaagatttgtcaagctctgttactatatcctgcgtgtcctcatctcagtcatgtgaccagaagattcaggcaaagccacaagaacacaagagagtgtcagtggtggttaaccgtgagaccgttgagcagaagtttaaggcacagccacaagctcagaagattaaggcacagccagaagtgcagaagagAGtgtcagtgaagattagccatgagactgaggatgagcacttgctgaacttgccgtccacgcctaaaggcaaagagatttcgatgggcgctgttcttggcaggatagatgagattcctgtgagcaactgtgtgggccatattgatgaatttccacctgatgatttcactaggcttgcagatgcgttcccagttagtgattttatcggcatggcagatgtgccactgggcgatgattacattggccttgcagacatcagccacctgccgctgcctatcacagatctgaagttcgacctcgatgcagaactcaactgggacgggttcgactttgcttcattggaacaagaactcaactgtctttga
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| Protein seq | MVPSSRKVRVFCSDPDATDSSDEDDQNKKERRFSREILIPMENSKASKPVKTLVQCGTKTVKDSEKEPTSKYRGVRRRAWGKWAAEIRDPVRKSRKWIGTFNSEEEAAAAYLAQSNQFHEELMALKIQSSVSEQEDLSSSVTISCVSSSQSCDQKIQAKPQEHKRVSVVVNRETVEQKFKAQPQAQKIKAQPEVQKRVSVKISHETEDEHLLNLPSTPKGKEISMGAVLGRIDEIPVSNCVGHIDEFPPDDFTRLADAFPVSDFIGMADVPLGDDYIGLADISHLPLPITDLKFDLDAELNWDGFDFASLEQELNCL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.324427 | 0.027840 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0309700 | RBH | 2.480893 | 1.630132 | 2.553760 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g13940 | RBH | 3.429633 | 1.188807 | 0.979645 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0309700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005080 | RBH | 0.182950 | 9.156012 | 4.130851 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005100 | RBH | 0.092024 | 3.081395 | 3.851876 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0005300 | RBH | 0.799154 | 7.245204 | 7.484861 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005000 | RBH | 0.102169 | 0.164819 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0005210 | RBH | 7.456611 | 10.107212 | 12.506690 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0147100 | RBH | 3.1158045 | 9.76704 | 4.9331775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0005360 | RBH | 0.207698 | 0.114898 | 2.583048 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0134500 | RBH | 2.311377 | 4.711853 | 4.1373185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005240 | RBH | 0.323621 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005210 | RBH | 2.610485 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005090 | RBH | 0.145301 | 0.0 | 1.325145 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005140 | RBH | 0.208916 | 0.993314 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005420 | RBH | 0.139567 | 1.274252 | 1.748220 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0005170 | RBH | 1.586067 | 22.108770 | 8.947749 |
