Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0008080 | OGI:08025720 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:8355392-8358191 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaaaaaatgtaaatttgcaggggggaattttgggggAaaaaaagacaaaataacaaatttaataaactgctgatctcttcgcgtcttttactctactctgacggtctctccgcgcatcatcagtctctcagccaattatcccggtgcgcccgtcgtccccctcacgccgtcgccgtcgccggctcgccgccgcccgccgccgccaccgccaacacaagatccggacgccattcttcgcgtgctgcttagctcctccctttccttgcctccggtttccttccctcgggtcagttagttgctcaggcgcggcgcggcgcggcgctacccggaggttgctgcgagctccgtcggcgcacgcatggcacgccgcgtccccgcccgagcacgatccgtcggcggcggccctcgctccgagggcgcgcgacccggaccaaagaccggagcagcaggcgccagcgggggtggcgccgaggacgcactccacatgttcgacgaattgctccggcaaggcaggggcgggggcgggggcgcctcgatcatccgcagcttgaaccgcgccctcgccgccgtcgcgcgcgacagccccgcggccgccgtgtccggcttcaaccgcatggcacgatccagcgacggcgcggtgactcccaccttgcacacctatggcatcctcatcggctgctgctgccgcgcgggccgtttggacctcggtttcgcgggattgggcaatgttattaagaagggatatagagtggaacccatcatctttactcctctgctcaagagcctctgtgccgagaagtggacgagcaacgcaatgaacatagtgctccgcagaatgacagagcttggctgcgcgccgcatgtcttctcctacaacattcttctcaagggactctgtcatgagagcagaagccaagaagctctcgagctactgcacatgatggcggatgatggagGAgactgccctcctgatgtggtgtcgtacagcaccatcatcgatggcttgttcaaagagggggatttgatggtacgaaatggtatccaacactattgtcatggataagagcttacagtacataccatgaaaTGCtggagcgagggattttaccagatgttgtgacttacaacactattgtcgctgccttgtgcaaggctcaagctatggataaggccatggatgtacttaataggatggttaagaatggagtcatgcccgattgcatcacatataatagtattgtgcatggatattgctcttctggacagtcgaaagaagctattggaattttggaaaagatgtgcagcgatggtgttgaaccagatgctgttacttatacatctctaatggactatctctgcaagaacggaagatgcatagaagctagaaagattcttgattctatgatcaagaggggcctaaagcctaatgttattacatatagtaccttgcttcatggttatgctacgaaaggagctcttgttgagatgcgtgatctcttggatttgatggtacgaaatggtatccaacctgatcgtcatgtctttagcatactaatatgtgcatgcactaagcatcaaaatgtagatgtggccatgtttgtattcagcaaaatgaggcagcaaggattaactccggatgtagtgacctacggaacattgatagatggactttgtaagtcaggcagagtagatgatgcaatgcttaatttggagcagatgattagtgaaggtgtaacccctaacatcgttattttcaacacactgattcatggtctctgtaccagtgacaaatgggagaaggctgaggagttaatctctgaaatgattaacagaggaatttgtccggacacaatttcctttaattcaataattgataatctttgcaaagaagggaggtttatagaatctgaaaaactctttggcctgatgggacgtattgatgtgaaggttgatgtcattacatacagtacactcatcgatggatattgcttggcaggtaagatggatgaagcaatgaagttactttctgacatggtctcagttgggttgaaacctgatactgttacttatagcactttgattaatggctactgtaaaattagtaggatggagaatgcattatctcttttcaggcagatggtgtgcaatggtgttagtcctaatattatcacgtataacatagttcttcaaggtttatttcagactggacaaactcgtgctgctaaagaaatctatgtcaggattatcAaaaggggaatacagcttgaaattagcacatgcaacatagtccttcaaggactttgcaaaaataatctcactggtgaggcacttcagatgtttcagaatctatgtttgatggatgtaaagcttgagactagaactttcaatataatgattggttccttgcttagaagtggcagaaaggatgaatcaaaggatttgtttgctgctctctcggcaaatggtttagcaccggatgttgtgacctataccttaatgattgaaaatctcatagaaggtggcttgctcgaagagtctgataatctatttctttcaatggagaagaatggctgtgttcctaactcccgtatgcttaattgcatcgtcagaaagttacttcagaaaggggagataggcagggctggtGtttatctgtccaaaattgatAaaaatgacttctcccttgaagcttccactgctgagttactgattttgctggtttcaagtgggaagtacaatcaacatatgaagggtctccctgagaagtaccactcctttgtgaaatccagggctgtttga
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| CDS seq | atggcacgccgcgtccccgcccgagcacgatccgtcggcggcggccctcgctccgagggcgcgcgacccggaccaaagaccggagcagcaggcgccagcgggggtggcgccgaggacgcactccacatgttcgacgaattgctccggcaaggcaggggcgggggcgggggcgcctcgatcatccgcagcttgaaccgcgccctcgccgccgtcgcgcgcgacagccccgcggccgccgtgtccggcttcaaccgcatggcacgatccagcgacggcgcggtgactcccaccttgcacacctatggcatcctcatcggctgctgctgccgcgcgggccgtttggacctcggtttcgcgggattgggcaatgttattaagaagggatatagagtggaacccatcatctttactcctctgctcaagagcctctgtgccgagaagtggacgagcaacgcaatgaacatagtgctccgcagaatgacagagcttggctgcgcgccgcatgtcttctcctacaacattcttctcaagggactctgtcatgagagcagaagccaagaagctctcgagctactgcacatgatggcggatgatggagGAgactgccctcctgatgtggtgtcgtacagcaccatcatcgatggcttgttcaaagagggggatttgatggctcaagctatggataaggccatggatgtacttaataggatggttaagaatggagtcatgcccgattgcatcacatataatagtattgtgcatggatattgctcttctggacagtcgaaagaagctattggaattttggaaaagatgtgcagcgatggtgttgaaccagatgctgttacttatacatctctaatggactatctctgcaagaacggaagatgcatagaagctagaaagattcttgattctatgatcaagaggggcctaaagcctaatgttattacatatagtaccttgcttcatggttatgctacgaaaggagctcttgttgagatgcgtgatctcttggatttgatggtacgaaatggtatccaacctgatcgtcatgtctttagcatactaatatgtgcatgcactaagcatcaaaatgtagatgtggccatgtttgtattcagcaaaatgaggcagcaaggattaactccggatgtagtgacctacggaacattgatagatggactttgtaagtcaggcagagtagatgatgcaatgcttaatttggagcagatgattagtgaaggtgtaacccctaacatcgttattttcaacacactgattcatggtctctgtaccagtgacaaatgggagaaggctgaggagttaatctctgaaatgattaacagaggaatttgtccggacacaatttcctttaattcaataattgataatctttgcaaagaagggaggtttatagaatctgaaaaactctttggcctgatgggacgtattgatgtgaaggttgatgtcattacatacagtacactcatcgatggatattgcttggcaggtaagatggatgaagcaatgaagttactttctgacatggtctcagttgggttgaaacctgatactgttacttatagcactttgattaatggctactgtaaaattagtaggatggagaatgcattatctcttttcaggcagatggtgtgcaatggtgttagtcctaatattatcacgtataacatagttcttcaaggtttatttcagactggacaaactcgtgctgctaaagaaatctatgtcaggattatcAaaaggggaatacagcttgaaattagcacatgcaacatagtccttcaaggactttgcaaaaataatctcactggtgaggcacttcagatgtttcagaatctatgtttgatggatgtaaagcttgagactagaactttcaatataatgattggttccttgcttagaagtggcagaaaggatgaatcaaaggatttgtttgctgctctctcggcaaatggtttagcaccggatgttgtgacctataccttaatgattgaaaatctcatagaaggtggcttgctcgaagagtctgataatctatttctttcaatggagaagaatggctgtgttcctaactcccgtatgcttaattgcatcgtcagaaagttacttcagaaaggggagataggcagggctggtGtttatctgtccaaaattgatAaaaatgacttctcccttgaagcttccactgctgagttactgattttgctggtttcaagtgggaagtacaatcaacatatgaagggtctccctgagaagtaccactcctttgtgaaatccagggctgtttga
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| Protein seq | MARRVPARARSVGGGPRSEGARPGPKTGAAGASGGGAEDALHMFDELLRQGRGGGGGASIIRSLNRALAAVARDSPAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKWTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDLMAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQGLTPDVVTYGTLIDGLCKSGRVDDAMLNLEQMISEGVTPNIVIFNTLIHGLCTSDKWEKAEELISEMINRGICPDTISFNSIIDNLCKEGRFIESEKLFGLMGRIDVKVDVITYSTLIDGYCLAGKMDEAMKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALSLFRQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGIQLEISTCNIVLQGLCKNNLTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESKDLFAALSANGLAPDVVTYTLMIENLIEGGLLEESDNLFLSMEKNGCVPNSRMLNCIVRKLLQKGEIGRAGVYLSKIDKNDFSLEASTAELLILLVSSGKYNQHMKGLPEKYHSFVKSRAV |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0008080 | OsLima_08g0008080.01 | Chr08 | 8355392 | 8358191 | + | NAM | ||
| CDS seq | atggcacgccgcgtccccgcccgagcacgatccgtcggcggcggccctcgctccgagggcgcgcgacccggaccaaagaccggagcagcaggcgccagcgggggtggcgccgaggacgcactccacatgttcgacgaattgctccggcaaggcaggggcgggggcgggggcgcctcgatcatccgcagcttgaaccgcgccctcgccgccgtcgcgcgcgacagccccgcggccgccgtgtccggcttcaaccgcatggcacgatccagcgacggcgcggtgactcccaccttgcacacctatggcatcctcatcggctgctgctgccgcgcgggccgtttggacctcggtttcgcgggattgggcaatgttattaagaagggatatagagtggaacccatcatctttactcctctgctcaagagcctctgtgccgagaagtggacgagcaacgcaatgaacatagtgctccgcagaatgacagagcttggctgcgcgccgcatgtcttctcctacaacattcttctcaagggactctgtcatgagagcagaagccaagaagctctcgagctactgcacatgatggcggatgatggagGAgactgccctcctgatgtggtgtcgtacagcaccatcatcgatggcttgttcaaagagggggatttgatggctcaagctatggataaggccatggatgtacttaataggatggttaagaatggagtcatgcccgattgcatcacatataatagtattgtgcatggatattgctcttctggacagtcgaaagaagctattggaattttggaaaagatgtgcagcgatggtgttgaaccagatgctgttacttatacatctctaatggactatctctgcaagaacggaagatgcatagaagctagaaagattcttgattctatgatcaagaggggcctaaagcctaatgttattacatatagtaccttgcttcatggttatgctacgaaaggagctcttgttgagatgcgtgatctcttggatttgatggtacgaaatggtatccaacctgatcgtcatgtctttagcatactaatatgtgcatgcactaagcatcaaaatgtagatgtggccatgtttgtattcagcaaaatgaggcagcaaggattaactccggatgtagtgacctacggaacattgatagatggactttgtaagtcaggcagagtagatgatgcaatgcttaatttggagcagatgattagtgaaggtgtaacccctaacatcgttattttcaacacactgattcatggtctctgtaccagtgacaaatgggagaaggctgaggagttaatctctgaaatgattaacagaggaatttgtccggacacaatttcctttaattcaataattgataatctttgcaaagaagggaggtttatagaatctgaaaaactctttggcctgatgggacgtattgatgtgaaggttgatgtcattacatacagtacactcatcgatggatattgcttggcaggtaagatggatgaagcaatgaagttactttctgacatggtctcagttgggttgaaacctgatactgttacttatagcactttgattaatggctactgtaaaattagtaggatggagaatgcattatctcttttcaggcagatggtgtgcaatggtgttagtcctaatattatcacgtataacatagttcttcaaggtttatttcagactggacaaactcgtgctgctaaagaaatctatgtcaggattatcAaaaggggaatacagcttgaaattagcacatgcaacatagtccttcaaggactttgcaaaaataatctcactggtgaggcacttcagatgtttcagaatctatgtttgatggatgtaaagcttgagactagaactttcaatataatgattggttccttgcttagaagtggcagaaaggatgaatcaaaggatttgtttgctgctctctcggcaaatggtttagcaccggatgttgtgacctataccttaatgattgaaaatctcatagaaggtggcttgctcgaagagtctgataatctatttctttcaatggagaagaatggctgtgttcctaactcccgtatgcttaattgcatcgtcagaaagttacttcagaaaggggagataggcagggctggtGtttatctgtccaaaattgatAaaaatgacttctcccttgaagcttccactgctgagttactgattttgctggtttcaagtgggaagtacaatcaacatatgaagggtctccctgagaagtaccactcctttgtgaaatccagggctgtttga
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| Protein seq | MARRVPARARSVGGGPRSEGARPGPKTGAAGASGGGAEDALHMFDELLRQGRGGGGGASIIRSLNRALAAVARDSPAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKWTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDLMAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQGLTPDVVTYGTLIDGLCKSGRVDDAMLNLEQMISEGVTPNIVIFNTLIHGLCTSDKWEKAEELISEMINRGICPDTISFNSIIDNLCKEGRFIESEKLFGLMGRIDVKVDVITYSTLIDGYCLAGKMDEAMKLLSDMVSVGLKPDTVTYSTLINGYCKISRMENALSLFRQMVCNGVSPNIITYNIVLQGLFQTGQTRAAKEIYVRIIKRGIQLEISTCNIVLQGLCKNNLTGEALQMFQNLCLMDVKLETRTFNIMIGSLLRSGRKDESKDLFAALSANGLAPDVVTYTLMIENLIEGGLLEESDNLFLSMEKNGCVPNSRMLNCIVRKLLQKGEIGRAGVYLSKIDKNDFSLEASTAELLILLVSSGKYNQHMKGLPEKYHSFVKSRAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0248400 | RBH | 0.156687 | 0.271192 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g15000 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0248400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008570 | RBH | 0.220970 | 0.000000 | 1.321100 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0008610 | RBH | 0.0 | 0.0 | 0.115856 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008710 | RBH | 0.0 | 0.0 | 0.168806 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0008580 | RBH | 0.077179 | 0.063838 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008500 | RBH | 1.512768 | 2.495011 | 0.408510 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0142700 | RBH | 1.1484425 | 2.321098 | 1.6166285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0008530 | RBH | 0.080597 | 0.133832 | 0.154079 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0136500 | RBH | 0.9572395 | 1.81202 | 4.4223915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015500 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008260 | RBH | 0.151811 | 2.514384 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0008110 | RBH | 0.834085 | 2.464585 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008830 | RBH | 0.133337 | 0.000000 | 0.244137 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008260 | RBH | 0.031265 | 0.526323 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G008520 | RBH | 0.000000 | 0.285957 | 0.906825 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0008310 | RBH | 0.257878 | 1.700231 | 2.115407 |
