Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os08g0248400 | OGI:08025720 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr08:9050060-9051612 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCATCAGTCTCTCAGCCAATTATCCCGGTGCGCCCGTCGTCCCCTCACGCCGTCGCCGTCGCCGGCTCGCCGCCGCCACCGCCAACACAAGATCCGGACGCCATTCTTCGCGTGCTGCTTAGCTCCTCCCTTTCCTTGCCTCCGGTTTCCTTCCCTCGGGTCAGTTAGTTGCTCAGGCGCGGCGCGGCGCGGCGCTACCCGGAGGTTGCTGCGAGCTCCGTCGGCGCACGCATGGCACGCCGCGTCCCCGCCCGAGCACGATCCGTCGGCGGCGGCCCTCGCTCCGAGGGTGCGCGACCCGGACCAAAGACCGGAGCAGCAGGCGCCAGCGGGGGTGGCGCCGAGGACGCACTCCACGTGTTCGACGAATTGCTCCGGCAAGGCAGGGGCGGGGGCGGGGGCGCCTCGATCATCCGCAGCTTGAACCGCGCCCTCGCCGCCGTCGCGCGCGACAGCCCCGCGGCCGCCGTGTCCGGCTTCAACCGCATGGCACGATCCAGCGACGGCGCGGTGACTCCCACCTTGCACACCTATGGCATCCTCATCGGCTGCTGCTGCCGCGCGGGCCGTTTGGACCTCGGTTTCGCGGGATTGGGCAATGTTATTAAGAAGGGATATAGAGTGGAACCCATCATCTTTACTCCTCTGCTCAAGAGCCTCTGTGCCGAGAAGAGGACGAGCAACGCAATGAACATAGTGCTCCGCAGAATGACAGAGCTTGGCTGCGCGCCGCATGTCTTCTCCTACAACATTCTTCTCAAGGGACTCTGTCATGAGAGCAGAAGCCAAGAAGCTCTCGAGCTGCTGCACATGATGGCGGATGATGGAGGAGACTGCCCTCCTGATGTGGTGTCGTACAGCACCATCATCGATGGCTTGTTCAAAGAGGGGGATTCGGACAAAGCTTACAGTACATACCATGAAATGCTGGAGCGAGGGATTTTACCAGATGTTGTGACTTACAACACTATTGTCGCTGCCTTGTGCAAGGCTCAAGCTATGGATAAGGCCATGGATGTACTTAATAGGATGGTTAAGAATGGAGTCATGCCCGATTGCATCACATATAATAGTATTGTGCATGGATATTGCTCTTCTGGACAGTCGAAAGAAGCTATTGGAATTTTGGAAAAGATGTGCAGCGATGGTGTTGAACCAGATGCTGTTACTTATACATCTCTAATGGACTATCTCTGCAAGAACGGAAGATGCATAGAAGCTAGAAAGATTCTTGATTCTATGATCAAGAGGGGCCTAAAGCCTAATGTTATTACATACAGTACCTTGCTTCATGGTTATGCTACGAAAGGAGCTCTTGTTGAGATGCGTGATCTCTTGGATTTGATGGTACGAAATGGTATCCAACCTGATCGTCATGTCTTTAGCATACTAATATGTGCATGCACTAAGCATCAAAATGTAGATGTGGCCATGTTTGTATTCAGCAAAATGAGGCAGCAAAGATTAACTCCGGATGTAGTGACCTACGGAACATTGATAGATGGACTTTGTAAGTCAGGCAGAGTAGATGATGCAATGCTTAATTTGGAGC
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| CDS seq | ATGGCACGCCGCGTCCCCGCCCGAGCACGATCCGTCGGCGGCGGCCCTCGCTCCGAGGGTGCGCGACCCGGACCAAAGACCGGAGCAGCAGGCGCCAGCGGGGGTGGCGCCGAGGACGCACTCCACGTGTTCGACGAATTGCTCCGGCAAGGCAGGGGCGGGGGCGGGGGCGCCTCGATCATCCGCAGCTTGAACCGCGCCCTCGCCGCCGTCGCGCGCGACAGCCCCGCGGCCGCCGTGTCCGGCTTCAACCGCATGGCACGATCCAGCGACGGCGCGGTGACTCCCACCTTGCACACCTATGGCATCCTCATCGGCTGCTGCTGCCGCGCGGGCCGTTTGGACCTCGGTTTCGCGGGATTGGGCAATGTTATTAAGAAGGGATATAGAGTGGAACCCATCATCTTTACTCCTCTGCTCAAGAGCCTCTGTGCCGAGAAGAGGACGAGCAACGCAATGAACATAGTGCTCCGCAGAATGACAGAGCTTGGCTGCGCGCCGCATGTCTTCTCCTACAACATTCTTCTCAAGGGACTCTGTCATGAGAGCAGAAGCCAAGAAGCTCTCGAGCTGCTGCACATGATGGCGGATGATGGAGGAGACTGCCCTCCTGATGTGGTGTCGTACAGCACCATCATCGATGGCTTGTTCAAAGAGGGGGATTCGGACAAAGCTTACAGTACATACCATGAAATGCTGGAGCGAGGGATTTTACCAGATGTTGTGACTTACAACACTATTGTCGCTGCCTTGTGCAAGGCTCAAGCTATGGATAAGGCCATGGATGTACTTAATAGGATGGTTAAGAATGGAGTCATGCCCGATTGCATCACATATAATAGTATTGTGCATGGATATTGCTCTTCTGGACAGTCGAAAGAAGCTATTGGAATTTTGGAAAAGATGTGCAGCGATGGTGTTGAACCAGATGCTGTTACTTATACATCTCTAATGGACTATCTCTGCAAGAACGGAAGATGCATAGAAGCTAGAAAGATTCTTGATTCTATGATCAAGAGGGGCCTAAAGCCTAATGTTATTACATACAGTACCTTGCTTCATGGTTATGCTACGAAAGGAGCTCTTGTTGAGATGCGTGATCTCTTGGATTTGATGGTACGAAATGGTATCCAACCTGATCGTCATGTCTTTAGCATACTAATATGTGCATGCACTAAGCATCAAAATGTAGATGTGGCCATGTTTGTATTCAGCAAAATGAGGCAGCAAAGATTAACTCCGGATGTAGTGACCTACGGAACATTGATAGATGGACTTTGTAAGTCAGGCAGAGTAGATGATGCAATGCTTAATTTGGAGC
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| Protein seq | MARRVPARARSVGGGPRSEGARPGPKTGAAGASGGGAEDALHVFDELLRQGRGGGGGASIIRSLNRALAAVARDSPAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAMLNLE |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os08g0248400 | Os08t0248400-01 | Chr08 | 9050060 | 9051612 | + | irgsp1_rep | ||
| CDS seq | ATGGCACGCCGCGTCCCCGCCCGAGCACGATCCGTCGGCGGCGGCCCTCGCTCCGAGGGTGCGCGACCCGGACCAAAGACCGGAGCAGCAGGCGCCAGCGGGGGTGGCGCCGAGGACGCACTCCACGTGTTCGACGAATTGCTCCGGCAAGGCAGGGGCGGGGGCGGGGGCGCCTCGATCATCCGCAGCTTGAACCGCGCCCTCGCCGCCGTCGCGCGCGACAGCCCCGCGGCCGCCGTGTCCGGCTTCAACCGCATGGCACGATCCAGCGACGGCGCGGTGACTCCCACCTTGCACACCTATGGCATCCTCATCGGCTGCTGCTGCCGCGCGGGCCGTTTGGACCTCGGTTTCGCGGGATTGGGCAATGTTATTAAGAAGGGATATAGAGTGGAACCCATCATCTTTACTCCTCTGCTCAAGAGCCTCTGTGCCGAGAAGAGGACGAGCAACGCAATGAACATAGTGCTCCGCAGAATGACAGAGCTTGGCTGCGCGCCGCATGTCTTCTCCTACAACATTCTTCTCAAGGGACTCTGTCATGAGAGCAGAAGCCAAGAAGCTCTCGAGCTGCTGCACATGATGGCGGATGATGGAGGAGACTGCCCTCCTGATGTGGTGTCGTACAGCACCATCATCGATGGCTTGTTCAAAGAGGGGGATTCGGACAAAGCTTACAGTACATACCATGAAATGCTGGAGCGAGGGATTTTACCAGATGTTGTGACTTACAACACTATTGTCGCTGCCTTGTGCAAGGCTCAAGCTATGGATAAGGCCATGGATGTACTTAATAGGATGGTTAAGAATGGAGTCATGCCCGATTGCATCACATATAATAGTATTGTGCATGGATATTGCTCTTCTGGACAGTCGAAAGAAGCTATTGGAATTTTGGAAAAGATGTGCAGCGATGGTGTTGAACCAGATGCTGTTACTTATACATCTCTAATGGACTATCTCTGCAAGAACGGAAGATGCATAGAAGCTAGAAAGATTCTTGATTCTATGATCAAGAGGGGCCTAAAGCCTAATGTTATTACATACAGTACCTTGCTTCATGGTTATGCTACGAAAGGAGCTCTTGTTGAGATGCGTGATCTCTTGGATTTGATGGTACGAAATGGTATCCAACCTGATCGTCATGTCTTTAGCATACTAATATGTGCATGCACTAAGCATCAAAATGTAGATGTGGCCATGTTTGTATTCAGCAAAATGAGGCAGCAAAGATTAACTCCGGATGTAGTGACCTACGGAACATTGATAGATGGACTTTGTAAGTCAGGCAGAGTAGATGATGCAATGCTTAATTTGGAGC
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| Protein seq | MARRVPARARSVGGGPRSEGARPGPKTGAAGASGGGAEDALHVFDELLRQGRGGGGGASIIRSLNRALAAVARDSPAAAVSGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAMLNLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0248400 | RBH | 0.156687 | 0.271192 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g15000 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0495200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000540 | SBH | 0.144536 | 1.140030 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000550 | RBH | 0.0 | 0.157942 | 0.422831 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000560 | SBH | 0.274900 | 0.485085 | 0.778541 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0008580 | RBH | 0.077179 | 0.063838 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0008500 | RBH | 1.512768 | 2.495011 | 0.408510 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0142700 | RBH | 1.1484425 | 2.321098 | 1.6166285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0008530 | RBH | 0.080597 | 0.133832 | 0.154079 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0136500 | RBH | 0.9572395 | 1.81202 | 4.4223915 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0008080 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0008260 | RBH | 0.151811 | 2.514384 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0008110 | RBH | 0.834085 | 2.464585 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008830 | RBH | 0.133337 | 0.000000 | 0.244137 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0008260 | RBH | 0.031265 | 0.526323 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000540 | SBH | 0.034128 | 0.191041 | 0.115861 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000540 | SBH | 0.000000 | 1.718111 | 0.170857 |
