Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0027320 | OGI:07078280 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:29649490-29650964 | ||||||||
| Gene Symbol | POX22.3, POX22.3, OSPER, OsPOX, POX, Pir3, prx111, POX22, OsPOX1, POX1, OsPOX22.3, OsPR9, PR9, POX5.1, POX5.1, prx113, POX5 | ||||||||||
| DNA seq | aggccattgcatacacacacagagttgtttgcattgtagattgacaatggcctcttgtctgtcagtcctgttgctcttgtgtctagcacttgcaggttcagtctccgggcaacaactgtcggctacattctattcgaggtcgtgcccgagagctctggccatcatcagggccggcgtgagagctgcggtggcgcaggagcctcgcatgggggcgtcactgctcaggcttcacttccatgactgctttgtccaagcaagtcgtgcatttccacactacttgacttacatttttatatccatcagtcaattacattgtggtcgcagcctttgcagtttcagttctttacactctttcagtctctcttccagtttaatgtgctgcgtcagaacagaatggactcgtagcactgtgttgacgttggattagagagactatggccaccgaatttgctctcaagtcatactagttcctactactactctgaattaacctgaaaaattaattcaacgtgctaattgtgtgttgtgcttcgtgggtgacatggatcaggggtgcgacgcgtccgtactgctgaacgacacggccaacttcaccggcgagcagggggcgaaccccaacgtcggatccatcagaggattcaacgtcgtcgacaacatcaaggcgcaggtcgaggccgcgtgcaagcagaccgtctcctgcgccgacatcctcgccgtcgccgcccgcgactccgtcgtcgccgtaagatcatgcccatccttgagcgcgcagctatacgtactatacggcgagcggcgaactgaacttgtgtgtgtgcagttgggtgggccgtcatggagggttcttctcgggaggcgtgactcgacgacggcgagcttggcgctggcgaacagcgacctgccacctccgtccttcgacgtcgccaacctcaccgccgcgttcgccgccaaggggctgagccaagccgacatggtggcgctctccggcgcgcacacggtcgggcaggcgcagtgccagaacttccgcgacaggctctacaacgagaccaacatcgacgccgccttcgcggcggcgctcaaggccagctgcccgcggccgacgggcagcggcgacggcaacctggcgccgctggacacgacgacgcccaccgcgttcgacaacgcctactacaccaacctgctgtcgaacaaggggctcctgcactccgaccaggtgctcttcaacggcggcgccgtcgacggccaggtccggtcgtacgcgtccgggccgtcgaggttcagaagggacttcgcggcggccatggtgaagatggggaacatcgccccgttgacgggaacgcagggacaaatcaggctcgtctgctccaaggtgaattaattagcggtgatcatcaacgaaaattctgagtgcatgaggggacaataataaggctatatatgccactgaaatcgatatttgtgctttgcactgatca
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| CDS seq | atggcctcttgtctgtcagtcctgttgctcttgtgtctagcacttgcaggttcagtctccgggcaacaactgtcggctacattctattcgaggtcgtgcccgagagctctggccatcatcagggccggcgtgagagctgcggtggcgcaggagcctcgcatgggggcgtcactgctcaggcttcacttccatgactgcttttttaatgtgctgcgtcagaacagaatggactcgtag |
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| Protein seq | MASCLSVLLLLCLALAGSVSGQQLSATFYSRSCPRALAIIRAGVRAAVAQEPRMGASLLRLHFHDCFFNVLRQNRMDS |
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| Function | Peroxidase [UniProtKB/Swiss-Prot:Q05855] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027320 | OsLima_07g0027320.01 | Chr07 | 29649536 | 29649894 | + | NAM | ||
| CDS seq | atggcctcttgtctgtcagtcctgttgctcttgtgtctagcacttgcaggttcagtctccgggcaacaactgtcggctacattctattcgaggtcgtgcccgagagctctggccatcatcagggccggcgtgagagctgcggtggcgcaggagcctcgcatgggggcgtcactgctcaggcttcacttccatgactgcttttttaatgtgctgcgtcagaacagaatggactcgtag
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| Protein seq | MASCLSVLLLLCLALAGSVSGQQLSATFYSRSCPRALAIIRAGVRAAVAQEPRMGASLLRLHFHDCFFNVLRQNRMDS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0027320 | OsLima_07g0027320.02 | Chr07 | 29649490 | 29650964 | + | IsoSeq | ||
| CDS seq | gccattgcatacacacacagagttgtttgcattgta |
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| Protein seq | AIAYTHRVVCIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.166407 | 1.919616 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0676900 | SBH | 0.705209 | 0.000000 | 1.845380 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g47990 | SBH | 0.437273 | 0.000000 | 0.435053 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0676900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0027640 | SBH | 2.869101 | 405.604462 | 1.475809 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0027670 | RBH | 0.0 | 193.460403 | 0.936520 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027470 | SBH | 1.305326 | 735.757629 | 6.387176 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0027220 | RBH | 2.096577 | 0.711689 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0027530 | SBH | 0.000000 | 65.464058 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0466900 | SBH | 4.4859615 | 45.2625655 | 0.0957705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0028030 | SBH | 0.467455 | 21.708141 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0481000 | SBH | 2.2265265 | 0.7525525 | 0.3815175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016820 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0027760 | SBH | 0.637116 | 90.985054 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0027480 | SBH | 0.0 | 428.885162 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0027810 | SBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0027350 | RBH | 0.837192 | 223.136719 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027430 | RBH | 0.902221 | 51.911198 | 1.349761 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0027170 | RBH | 0.0 | 48.229000 | 0.0 |
