Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0017690 | OGI:07059280 | 6/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:21994007-22001668 | ||||||||
| Gene Symbol | RLCK235, OsRLCK235 | ||||||||||
| DNA seq | atggctacccatctcatcctgtccatggcaatcgtcaccgtcgcgctgctcataccccgtgcgggggggcaaccatggacactctgcggtggcgacaaggcaggcaactacgaggccagtagcaagtacctggacaacgtcaacctcatcggcgccaccctacccggtaacgcctcggcgtcgccggacctgttcgccaccgccgagcacgtcggctccgtgccggatcaggtgtccgccctcgcgctctgccgcggcgatgccaacccctcctcctgcctcagctgcctcaaccaggccttccgcgacctgccgaacttatgcgcctacaataaggtcgccgccatcttctacgactcgtgccagctcagctactccaacgccaccatcgccgccggcgacttctcctccgagaagatcccgatctacgggttccgcagctacgcgaacgtcacgacggagcaggcccggtacaaccgcctcgtggcggcgctggtgaacgccaccgccgactacgcggcgcgcaactccacgcggcggcggtacgcgtccggggaggccgacttcaacgcggagttccccaaggtgtacagctgggcgcagtgcacgccggacctgtcgccggcgagctgccggagttgcctcgcgcagatcatagggagaggtcttgggtatttcgagaacagcgtcggaggattcatccgcgcggtcaggtgcagcttccagtacagtaccacgccctttctcgatggaccgatgcttgtacggctgcaaggaacgtcaggtgcctcgccggcggctgcagtgccggcagttaaccagacgccgccagcggcgacgccgacgcctgaaggaggtgagtcaaagcattttcttttatgtgataactagaaaggtatcccgcacatatgcgcgggcacttatttaatattgtgtgaacttttttttttatgaatgtttacgtatagattatatttttgaaatagatctggactctattttaaatatatttttcgttattatatggtttggatatattacttgaaaccgtgcaaccttgaatttaattcaataacatgtatcacgataatagaataataatgtaatactggagttgttttatatctatttgtactgtacatgatatttttttaaccaagataaaggttttttttAaaaaaaaactaccacaataatgtctaaagcatcatattgttcattatattttgagaaatatctataattttgcatttgattttttgcaacacctaatatttataatcacatgagacacctttactaattaatttactatttttccaaacttatttacagtaactaatttattgaagtatactttatagttacatcaatagggtgtataacatacatccatcaaattgatacttgatgtgttggaattcctcaactataagaaaatatacttgagtagtttattgcgcatgttacttgattgttcatttgttgccaaaactatttgacaaagagaaaaacatagatatatgaccataaatctcatggtggattaaatggttttattatagcaagatcattggtatgaaatatttttttcataatttttttacatctatgcaacatttatgttgcccacttattagatactaatgaaataattctaaagattccaaaaaaattgagaatcttaatctcaaaaaaattaaaattaaatcaaatatacttaaaaatacacaactaaattgtgttgatttcatttattttacatatatagatttaaattagcattgcatagtcgtcaagtgatatttgacacctgaaatatgatgtgaaattatttaaaataggaaaaagtactcattactccctaaacccaaaaacaagacatcttttaccctcaactattaataccggacgaattacccctaactcaacctggagtggttttgttcctacgtgacagtctagttagcactttttttaaaaaaaataggtggggcctatctgccacactctctaccctctctatctctctcccatctctcctcttcctcaatcccattccccagcctctttctcttctccttctccttgctacaggggataactgggcaggcgcgccgctgccccgccgctcttttcctttctctttcgtctattcccctgcacttgctctcttaattgatccaccttgttgttctttgattgattggtgctttctgtctcgtcaagagagaggcattggtggtggggatcgataaagaaccatggtgggatggcatgctgtggtagacagagctacgggggcgcagccgaacctgaccatggaggaccagcataggtgctcatctccggcggccatcacatgacgatgagatgtgacggaaaggatatggagaagccacacggccatcaaggaggcgcgcgagcggagaccgaggaggaccagctcactgcccctagccttgcctattgatagacgtggagggagaagaaagagagagagggaggggtgaggaagagatatgataggtgggtcccatcaatttctttttaagaaaatgctgactggactgtcatctaggaccaaaaccacttcaggcagtgtcagcggggtaattcgtccagtattaatagttgagggtgaaagatgtctagcattcaggtttatgggggtaattcggtcgaccataatagtttaggggggtaattcatcctttttccttgaaaatattatcataacattatttattatatgtccggctcatgtgttacgatgtatttaggaacatagacatcaatagtttatttaattaaaggaatccaaatggatcacaaattagatatataattttaaaataatttaaagataggatatttttttatattgtagaagatctagtttaactacgtatatttgcataagtttatagagtattatatttttgtttttaaatagtagaaaatcatatattatggaccatggattttttatggcactacgtactacctatgttatgtattttttttactttattgatttaatcgtcagttcatacgtaggttttcttcaagcttcattgattcttttccagcacgtaagtacgtacacgaaggataattatgtttggtttctttttttggcgcacataaataaattattaccttcttaaaataatacatctaatctaacgatctaaaatattgggtccaccaatttaagtgaaaatcaacggtgagattaaatagtgccatgtggcggtcttggagtattcgtaggaatgccacgtagcgtttctaggaagtttagtttaatgaacttttagtatataatagatagatgtctagtacgtagtgttttatccatacaacctctaaatatacacgccatcaatttttgttatggataattttgtcacgtttaagaagatatcaggagatgtcatattttctatatgtaaaatttgtttcctatagatatatgtacaaatactttctcaaaaccgtaatttttttctcaaaacaggaaagctgacaaaagatttaaggttatgaggtcacttgtaagctaagactagatgaaacctcatacgatgttgcagaagtttttttattaataatagtagaaataacatataaaatagatagacaacataactttatatattttatataattttcttgtttgatcgagtatttaaaaatatactataaacaattaagatggtttggtttataataatctaaattatatatagattaatcactcaaaaaattaagatgatgtggcttgataagaggaggaaaataaataagataatatagattatcatgtaaagagaaaatttaggtaatatgacttcataagagaagaaaaacaaagaagataatttgaaacatagatcaatcatttgagggtttgaaaacaattgagatgatatggcttaataagaaaaaaagagaaatggtattaaatacatttagtgggtatgaactaggataggataggaatcataggatgtgctgttttgttttgtatgatctatatagtgttattgaacaatctgcgtcatttgttttttttttcttccccttttggcagaagcgatgagaaatgggcagaaaaaagctgtatcgattgcagtgcctacggttgttgcagtactgaccacaagtgcagcatgcttttatgcttggagaaggacaagaagaagagtaacaaaaccactacaatcccgtaagccctcttaactatttgaattgtgaaagaaaaaaaatctaatgaaataaactaatctatcgatgtagcttaggtggttcatccattcagtatatcgtatagtcaaatttcattatttcattttattgaatggatcaagctaaaggcacattcttagctttgagccttcgaggagtagtgattattaattactaaatacaaaggaatatattgaaattatcctattaatctagagaaaagaaacagatctaccactagattatcatgattcaattaataacatattatatctcaaaaacatacataaatttattggtgttaaaggtcaaacacaatgggaattggcaggatcatactaaatagggctatctttgttgagctctaattcctgaatgtgttgtctgttgtgttaccttcgttttttactagacaatggcattgatttttgaaataacatttgatcatttctcttattgaaaaaattagtataaatatgctaaaatataagtcatacttaaaatctatttgatggtaaaatatgtcaaaataaaataaatgatatttatatcattattttgaatatgacgagtgctcaaatatcatgtaaaaagtaaacgacattatctattaaaaaattgagcaattacttaatcagatttgtatttgatatatatgtatatatgtatatatatatatgtatatatatgtatctatatatgtatatatatatatatatatatatgtatatatatgtatctatatatgtatgtatgtatgtatgtatatgtatatgtatatgtatacatacatatgtataagttgcattactaatagccataagttttatttgtttggattataacttgaatagctccagtagatatatgccattaacatgcatttttgttgtcaagtctacaaaatgaaactacagttccttttaaccttttcgttcgactgatgagaaatctctagaattttgcctttcaagaaattacaggttctctacctttcaaatttagcacatgagggtgctttcaagtttcaatctttctactttggattcgtatggatgcagatcaagaaaacaaagaatcattaactgggtggagtctacatattatgccagtttgttgaaaagtttttttaaaaggaaaagtttgttgaaaagtttataattaaattttgcatctttgcaataactttctttgaaaacattgagttgtacattgcatgactgtacttctcttccgacagacctcgctagtcctgatgacattcagagtatagattcgctccacatggatctatcagcgctgcgtgttgctacagatggctttgctatgcacaataggcttggtgaaggaggctttggtgtcgtttacaaggtaggaattataacatgtgttgggttttgttgatttccttatgagttgtatctttatgtataacatatagagaaattttacggtcattgagaaagtatttgtaggtagcaaaattttacagtaaaaatttgttacctcgagatacctagtacttagagatactaaatgttacattagaaaatatgatacctcctggtatcttcataaggatgtaaaattacccaaacctatatggagtttttatttgcttcctacagggaattctacttgaaggtcaagaaatagcagtgaagaggctctcagaggcttccaaacaaggaattgaagagctgaaaacagagctacttttagttgctaagctgaaccacaagaatcttgtgaggctggttggtgtttgcctcgaaagtgatgagaaaatacttgtatatgaatacatgcctaatagaagcctcgataccattctttttggtacaacttttcaccttggttgtttctcgagaagaaaataattcgctgcaggctttacaattgctacagaaaatcatgtgttggtatttataatttatttttatgatagatactgtgaaaaacaaggaactagactggagtaagagattcaagatcatagatgggattgctagaggtttacaatatcttcatgaagattctcaaatgaagatagttcatcgtgacctcaaggcaagcaacgttttgttggactctgcttataatcctaagatatccgactttggtttagcaaagatatttggaggggatcaatcacatattgttacttattgcattgctggaacatagtaagtgccgcctctcgtttctgtagcgaagtactgatataggtatgagcatgatgttatgttcttgttacagtggatacatgtcaccagaatatgcgatacatggtaagtattctatcaagtctgacgtattcagcttcggtgtgttggtcttagagattgtcactggaagaaggaacttggattcctgtgactccgagcaagacgttgatctcataaatgatgtgagtgctaagactttatgaattctatatacaagaaacattttacagtataatatcatttgacaaattggggaatggattctaatctatcgagggaatgtcccctcttatacctttttctttcaatttcatgtaaattgttatatgttttttttAaaaaaaattacaatgtagtgtatagggacatctaacactccataaaaaatcaagttcaaatttaacctacatattgagaaaaaaagagagagagaaattcaggtatcaatagtaccactattattcataccagaatttatcttttttatatctcaatgtgtgagttgagtttggacgtaggattttgtgagtggtatatgtatgctttatgaatgttgttaaattttttgagaattttccatagctatttgaacagattttagacaaactgagagaacatcccttccagggatcaaaagagtttcccgccatgtagccaacttgtttgtggcctttctggttgcaggcatgggagcattggaccagggaaaaggccactgagttggttgatccatccttaagcaatgattgccccattgatttgttactgaagtgcattcacatcgggctactgtgtgttcagcaaaaaccttcagatagaccgttgatgtcagcagtaaatttcatgcttagcagcaaaactgtccaattaccttccctgtccaggtcaactttttgcagacagcagacttgtgccaactcaacaaaagtatcatccaataggctgtcatcacagcactcaaaccctgagctaattgatgaacacattttcatttaggtatctgctagatttcatgtgaatgaaaatttgtaattttttggtcacccaaaattgcacaatgacacattgtcaagcctagaattgcagtgtaatacaatgtgtaatttttgttcatcttaactataattctattattgtataaggtttaacattattcttatctatgcttggataactttta
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| CDS seq | atggctacccatctcatcctgtccatggcaatcgtcaccgtcgcgctgctcataccccgtgcgggggggcaaccatggacactctgcggtggcgacaaggcaggcaactacgaggccagtagcaagtacctggacaacgtcaacctcatcggcgccaccctacccggtaacgcctcggcgtcgccggacctgttcgccaccgccgagcacgtcggctccgtgccggatcaggtgtccgccctcgcgctctgccgcggcgatgccaacccctcctcctgcctcagctgcctcaaccaggccttccgcgacctgccgaacttatgcgcctacaataaggtcgccgccatcttctacgactcgtgccagctcagctactccaacgccaccatcgccgccggcgacttctcctccgagaagatcccgatctacgggttccgcagctacgcgaacgtcacgacggagcaggcccggtacaaccgcctcgtggcggcgctggtgaacgccaccgccgactacgcggcgcgcaactccacgcggcggcggtacgcgtccggggaggccgacttcaacgcggagttccccaaggtgtacagctgggcgcagtgcacgccggacctgtcgccggcgagctgccggagttgcctcgcgcagatcatagggagaggtcttgggtatttcgagaacagcgtcggaggattcatccgcgcggtcaggtgcagcttccagtacagtaccacgccctttctcgatggaccgatgcttgtacggctgcaaggaacgtcagacctcgctagtcctgatgacattcagagtatagattcgctccacatggatctatcagcgctgcgtgttgctacagatggctttgctatgcacaataggcttggtgaaggaggctttgaggcttccaaacaaggaattgaagagctgaaaacagagctacttttagttgctaagctgaaccacaagaatcttgtgaggctggttggtgtttgcctcgaaagtgatgagaaaatacttgtatatgaatacatgcctaatagaagcctcgataccattctttttgatactgtgaaaaacaaggaactagactggagtaagagattcaagatcatagatgggattgctagaggtttacaatatcttcatgaagattctcaaatgaagatagttcatcgtgacctcaaggcaagcaacgttttgttggactctgcttataatcctaagatatccgactttggtttagcaaagatatttggaggggatcaatcacatattgttacttattgcattgctggaacatatggatacatgtcaccagaatatgcgatacatggtaagtattctatcaagtctgacgtattcagcttcggtgtgttggtcttagagattgtcactggaagaaggaacttggattcctgtgactccgagcaagacgttgatctcataaatgattgcattcacatcgggctactgtgtgttcagcaaaaaccttcagatagaccgttgatgtcagcagtaaatttcatgcttagcagcaaaactgtccaattaccttccctgtccagacagcagacttgtgccaactcaacaaaagtatcatccaataggctgtcatcacagcactcaaaccctgagctaattgatgaacacattttcatttag
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| Protein seq | MATHLILSMAIVTVALLIPRAGGQPWTLCGGDKAGNYEASSKYLDNVNLIGATLPGNASASPDLFATAEHVGSVPDQVSALALCRGDANPSSCLSCLNQAFRDLPNLCAYNKVAAIFYDSCQLSYSNATIAAGDFSSEKIPIYGFRSYANVTTEQARYNRLVAALVNATADYAARNSTRRRYASGEADFNAEFPKVYSWAQCTPDLSPASCRSCLAQIIGRGLGYFENSVGGFIRAVRCSFQYSTTPFLDGPMLVRLQGTSDLASPDDIQSIDSLHMDLSALRVATDGFAMHNRLGEGGFEASKQGIEELKTELLLVAKLNHKNLVRLVGVCLESDEKILVYEYMPNRSLDTILFDTVKNKELDWSKRFKIIDGIARGLQYLHEDSQMKIVHRDLKASNVLLDSAYNPKISDFGLAKIFGGDQSHIVTYCIAGTYGYMSPEYAIHGKYSIKSDVFSFGVLVLEIVTGRRNLDSCDSEQDVDLINDCIHIGLLCVQQKPSDRPLMSAVNFMLSSKTVQLPSLSRQQTCANSTKVSSNRLSSQHSNPELIDEHIFI |
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| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0017690 | OsLima_07g0017690.01 | Chr07 | 21994007 | 22001668 | + | NAM | ||
| CDS seq | atggctacccatctcatcctgtccatggcaatcgtcaccgtcgcgctgctcataccccgtgcgggggggcaaccatggacactctgcggtggcgacaaggcaggcaactacgaggccagtagcaagtacctggacaacgtcaacctcatcggcgccaccctacccggtaacgcctcggcgtcgccggacctgttcgccaccgccgagcacgtcggctccgtgccggatcaggtgtccgccctcgcgctctgccgcggcgatgccaacccctcctcctgcctcagctgcctcaaccaggccttccgcgacctgccgaacttatgcgcctacaataaggtcgccgccatcttctacgactcgtgccagctcagctactccaacgccaccatcgccgccggcgacttctcctccgagaagatcccgatctacgggttccgcagctacgcgaacgtcacgacggagcaggcccggtacaaccgcctcgtggcggcgctggtgaacgccaccgccgactacgcggcgcgcaactccacgcggcggcggtacgcgtccggggaggccgacttcaacgcggagttccccaaggtgtacagctgggcgcagtgcacgccggacctgtcgccggcgagctgccggagttgcctcgcgcagatcatagggagaggtcttgggtatttcgagaacagcgtcggaggattcatccgcgcggtcaggtgcagcttccagtacagtaccacgccctttctcgatggaccgatgcttgtacggctgcaaggaacgtcagacctcgctagtcctgatgacattcagagtatagattcgctccacatggatctatcagcgctgcgtgttgctacagatggctttgctatgcacaataggcttggtgaaggaggctttgaggcttccaaacaaggaattgaagagctgaaaacagagctacttttagttgctaagctgaaccacaagaatcttgtgaggctggttggtgtttgcctcgaaagtgatgagaaaatacttgtatatgaatacatgcctaatagaagcctcgataccattctttttgatactgtgaaaaacaaggaactagactggagtaagagattcaagatcatagatgggattgctagaggtttacaatatcttcatgaagattctcaaatgaagatagttcatcgtgacctcaaggcaagcaacgttttgttggactctgcttataatcctaagatatccgactttggtttagcaaagatatttggaggggatcaatcacatattgttacttattgcattgctggaacatatggatacatgtcaccagaatatgcgatacatggtaagtattctatcaagtctgacgtattcagcttcggtgtgttggtcttagagattgtcactggaagaaggaacttggattcctgtgactccgagcaagacgttgatctcataaatgattgcattcacatcgggctactgtgtgttcagcaaaaaccttcagatagaccgttgatgtcagcagtaaatttcatgcttagcagcaaaactgtccaattaccttccctgtccagacagcagacttgtgccaactcaacaaaagtatcatccaataggctgtcatcacagcactcaaaccctgagctaattgatgaacacattttcatttag
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| Protein seq | MATHLILSMAIVTVALLIPRAGGQPWTLCGGDKAGNYEASSKYLDNVNLIGATLPGNASASPDLFATAEHVGSVPDQVSALALCRGDANPSSCLSCLNQAFRDLPNLCAYNKVAAIFYDSCQLSYSNATIAAGDFSSEKIPIYGFRSYANVTTEQARYNRLVAALVNATADYAARNSTRRRYASGEADFNAEFPKVYSWAQCTPDLSPASCRSCLAQIIGRGLGYFENSVGGFIRAVRCSFQYSTTPFLDGPMLVRLQGTSDLASPDDIQSIDSLHMDLSALRVATDGFAMHNRLGEGGFEASKQGIEELKTELLLVAKLNHKNLVRLVGVCLESDEKILVYEYMPNRSLDTILFDTVKNKELDWSKRFKIIDGIARGLQYLHEDSQMKIVHRDLKASNVLLDSAYNPKISDFGLAKIFGGDQSHIVTYCIAGTYGYMSPEYAIHGKYSIKSDVFSFGVLVLEIVTGRRNLDSCDSEQDVDLINDCIHIGLLCVQQKPSDRPLMSAVNFMLSSKTVQLPSLSRQQTCANSTKVSSNRLSSQHSNPELIDEHIFI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0541700 | SBH | 0.282247 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35390 | SBH | 0.410155 | 0.375310 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0541700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018230 | SBH | 0.147507 | 0.0 | 0.331814 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0017960 | SBH | 0.0 | 3.322375 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017930 | SBH | 0.000000 | 3.047947 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018060 | SBH | 0.0 | 0.679471 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017950 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0344900 | RBH | 0.1110465 | 3.7430005 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018450 | RBH | 0.0 | 0.064960 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0358400 | SBH | 1.1841445 | 13.820534 | 1.580925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017940 | RBH | 0.026354 | 0.135489 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017850 | RBH | 0.0 | 3.267753 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017760 | SBH | 0.0 | 10.376482 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018050 | SBH | 0.0 | 0.589770 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017950 | SBH | 0.000000 | 2.703057 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017960 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017710 | RBH | 0.0 | 0.0 | 0.0 |
