Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0541700 | OGI:07058990 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:21395341-21396704 | ||||||||
| Gene Symbol | RLCK237, OsRLCK237, RLCK235, OsRLCK235, AGP, OsAGP, CRK10 | ||||||||||
| DNA seq | GAGCCGAAAACACAACACCTAGATAGCCAGATTAATAAGAGTCCGTTGTACAAATATCGGTAACTGTATGAAAGAAGAAGCGGATATTCTTTCAACTCATCTTACAAGATTTATCTAGGCTCAAGCTCTGTGATCGGTGCTTCACTTTGATACATTTTCGTTGAGTTGTGTGGGTCAAGCAGGTTCTGCTCTGAATTTACATCTGAGCTAGCACCAATCTCCTGAAACCAAAAGGCAGGTCTGGACAAGGAAGGGAGACGGATTGTACCAGTAAGCATGACATTAACAGCAGACATCAATGGCCTATCAGCAGGTTTCGGCTGAACACAGAGCAGCCCAATTTGGATGCACTTGAGCACCTTGTCAACTGGATAGTGATTTCCCAATGATGGATCGATCAACTCGAGGGCTTTATCGCTAGTCCAGTGCTCCCATGTCTACATCAAATCAATGGGTTAATGTACGATAAAATTAACTCTAACTAGGAGAAGTATAGCCTAGTATAGAAGGAAAATATGTACTGCAAACTTCATATGTAGTGCAAACCAAGGAGCTACTATAGAATGCACAAATGGACATCTCTAAGATTTATCCACGTCACCATGAGTAATTTTCAGACGTCCATTTGTACATCCTACGGTAGTTTCAGATTTATGAAGTTTGTACTACATATTTTTCCCAGAATAAATAAATTAATTAATATAGTGTTCGTGTACTCACAGCATTTATGAGATCATAATCTTGTTGATCAGAACCATAGGAGCCAAAGTTTCTTCTCCCTGTGATGATCTCTAAAACCAGGACACCAAAGCTAAACACGTCTGACTTGATTGAATATTGTCCACGCATTGCATACTCTGGTGACATGTATCCACTGTAAGAATAACATTATTTTTACTGCATTACCAGATAACTAATAAAATTGTCATTTTAAAGGACTGGACATATACTTACTAAGTACCAGCTATACGATGGGTGATAACTTTTGATTGATCCCTTTCGAATATCTTAGCTAACCCAAAATCAGAAATCTTAGGATTATAAGCAGAATCCAACAGAACATTGCTTGCTTTGAGGTCACGATGAACTATCTTCAGTTGAGAATCTTCATGAAGATATTGCAACCCTCTAGCTATTCCATTTATGATCTTGAACCTCTGTCCCCAATTGAGCTCTTTGATTTTCTGCGCATCTACCACTCACACAAGAAAACACCAATTCGATATATATAAGTGTGACTTGATCATGTTTTGCATTACCATGATGAGAGATCTTTTTTTTGGAAAACAGGGAGCTGTGAGAAATAGTACCAAAAAGAATGGTATCAAGGCTTCTATTAGGCATATATTCATATACAAGTATCT
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| CDS seq | ATACTTGTATATGAATATATGCCTAATAGAAGCCTTGATACCATTCTTTTTGATGCGCAGAAAATCAAAGAGCTCAATTGGGGACAGAGGTTCAAGATCATAAATGGAATAGCTAGAGGGTTGCAATATCTTCATGAAGATTCTCAACTGAAGATAGTTCATCGTGACCTCAAAGCAAGCAATGTTCTGTTGGATTCTGCTTATAATCCTAAGATTTCTGATTTTGGGTTAGCTAAGATATTCGAAAGGGATCAATCAAAAGTTATCACCCATCGTATAGCTGGTACTTA |
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| Protein seq | ILVYEYMPNRSLDTILFDAQKIKELNWGQRFKIINGIARGLQYLHEDSQLKIVHRDLKASNVLLDSAYNPKISDFGLAKIFERDQSKVITHRIAGT |
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| Function | Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q0D5R2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0541700 | OsNip_07t0541700-01 | Chr07 | 21395341 | 21396704 | - | RAP2018-11-26 | ||
| CDS seq | ATACTTGTATATGAATATATGCCTAATAGAAGCCTTGATACCATTCTTTTTGATGCGCAGAAAATCAAAGAGCTCAATTGGGGACAGAGGTTCAAGATCATAAATGGAATAGCTAGAGGGTTGCAATATCTTCATGAAGATTCTCAACTGAAGATAGTTCATCGTGACCTCAAAGCAAGCAATGTTCTGTTGGATTCTGCTTATAATCCTAAGATTTCTGATTTTGGGTTAGCTAAGATATTCGAAAGGGATCAATCAAAAGTTATCACCCATCGTATAGCTGGTACTTA
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| Protein seq | ILVYEYMPNRSLDTILFDAQKIKELNWGQRFKIINGIARGLQYLHEDSQLKIVHRDLKASNVLLDSAYNPKISDFGLAKIFERDQSKVITHRIAGT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.282247 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0541500 | RBH | 0.689723 | 0.978879 | 0.259216 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35700 | SBH | 0.444602 | 0.732167 | 0.063605 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0541700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018180 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018160 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017860 | SBH | 0.103705 | 1.116436 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017990 | SBH | 0.061716 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018160 | RBH | 1.662809 | 0.0 | 1.537961 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0350500 | RBH | 1.0752965 | 0.455426 | 0.0112885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018650 | RBH | 0.309429 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0360900 | RBH | 0.246369 | 1.443188 | 0.2153185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017940 | SBH | 0.026354 | 0.135489 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018080 | RBH | 0.276953 | 1.528085 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017950 | RBH | 0.000000 | 2.410537 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018260 | RBH | 0.305676 | 0.0 | 0.250125 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018050 | RBH | 0.121880 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017910 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017630 | SBH | 0.466285 | 10.423672 | 0.741305 |
