Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0016340 | OGI:07055520 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:20614250-20617787 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctcatcccaccatatgaatgttttaacaggaaataacataacacatcacatatatctccaaaaacaatatagaacaataattcccaattccaattcaatcgcacattaagtggttcacaaatcatctcaatggtaattaagtttgtaagatatgctatcacaatcaatggtatatttatgatttacaagacaataaacatcattgatctactgagtggcttgcccctgtcatcctgtgaggctcgcatgtatttgcaatgaggaaaaacacaacctgagaatggattacaccaaaacctgtccatgcatttggacctgcaaaagaaaaacatgtaagtttctatatcgattttcaatatatacatacatatatacatacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacatgcgtgttgcaatatatacatttgcattcaggtgcctatcatatccatgctacaaagtcatgttagacatcatcttgcacatggcgattagagggcaaagtagcaaatcacaacatgagaagaggtaaaccaacatcttttcatccaaccttgcagggcaaagtatgggaattaatcccggccataacataacatccattgccatcaaaatataagaaccagtttcatagtaattcataacataccatgcatatttcctattatttacacaaacaagattgagctcatgaactatagttctttaagaataaacagatgcagcagcaacacctacaaagcatatcactaggattaatattcatttgctagaactcctgtactcattaatcacctaaatataatacattgtccacatatgattgcaaaaagaattaagagatggagagagggagtgaggggcaatttacttgagctagaaccgggaagttgttaacagttggctattggtgaagttagcatatggagaatcgggtctggccttcccaatcttctttgccctagaatgtgtatcttcacgtcttatattctcctttggtgttagatcatgcacctttctcttgtgtccaacaacactttgcagtgcattatcaatgctattgtgcttgaacacctcagttagtgccaccgaatttccttggttagctgagttatgtctcgcaatagtcgacaccttaaattgagtgaaaatcatatttaacatccagattaccacatatagcaatatcactctaattttgacttaaatgtactagtaacaattagtgaaatatgcagtaccttagaatgtagagcttgaccacttggatgcattagctgcaatgtaattttaaaaaattagttgcatgtaaataagctagaaaaatgaactaatagcatcatacattgtcacgtggccatgggatgcatcgagcttgagcacttcctaacttgctgatcattccatatgcacgaggtattatggtgtgctgattgaatacagtgttaacaaggatgtcaacacaatcatttagtgcctggccatcaacagaaatagcgtttttgcaacctggatataactcttgacttccatcatttaccaacttataatatgcttcagcatcaacatccaaatcatcttctgccccatcatctgtccctaaagtacgactagtacatcccaaggccttcgagcagcatttggtccatgtcatcattttgttcatgatgtgaacttgaggcaacacttggcttggaagtcgacatgctttctccatgatgaatccatgaggtatacccggccaaaaacccatcacaaatcaaatgctcacgaaccttatgttcacctaaccaatatctatttccacagttcttacaagggcagatgattctattgttgtgggctgaattggataaggcgaattctataaatttatcaaccccgatattatattcagcactagatctagatgttttcatccaatccttatccatggtaaattcaattaatattacctagtaacatagatgaaaatacagattgcaccattagtttataataatactaaaatatggggttaaatgaatcactgattaataatgcattaatgcctatgcaagcatctaaaccatctccacatccagctcaacaccaaacatctactaaacagttcagttccattcaccaactaataaaaatcttttggtaaatacaagagaccaaaaaagtattttatgaacattatttcactaagcataaacaagctagcacaggacaaccttgtaaaaccccctaaaaacacccaaattgggtcagtgtgacaaatgataatatagtactatgggtagatgtgtatcagtgcattcagacaatactagatttttttaaaataaatcttctgattcatgcgtaaataactgttattcatggaaaatcatttttctgtgtcaacttgtttagattcagatgatttgcatatagtgacgtgcttttggttgaaattcatcaagaacagtggttggtcaggctattgtagtatattggaagttggattgtttgatctacaggctgcactgcacccttttgcatgggaatgatttcaatcagcataatacatagatctcaacaaccgcatgtaaccaaaatattcagtttgagtaatattcagattctccaaatataatacatcctataatcatttataatacgtcctataattttctacaaccatagatttatatacaggaatgatacttctgcaatatggtacttaggaaatttcatgattcacaactgaacaactggtaactccaattttctaaattaaataatactaatgatatcgaatggtgatttcacactctagagcagactaggattaaataaatatatttaaaatctcaaactgcagggtaaaaaaacaataatagatcatatataaggagattctccagtaaaacattatgtattctagagctaataagtcaaagtagatcgatcatctcatgacaaatcaaagtatacatcacaaattttagttcatatactcacagtataaaggcagcaacggtagatcccaaagtggctcggctcgactaggatgaagaaagtggaggcgcgactccggatccaacagcgagagacgacaccgggactggagatggtgccggcggagggagcagcaagcgcccccctccccccgacgactaccctagcttgtttgaggcgcaagtgatatgcaagttttgggcatggaacgggagcgaagcaggatggtgtgtgtagatccggggagtagagcggcggcagcagagggcggcggcggcggcgcggtggcaggcggcggcggtggcggtggcagacggcggcggtggcggcggtggcgccgctcggagtcgcaagcggcgatggatgatttttttttctagcgttttttcttctctcacgcgatctgatcgagaggataaggtttcgtatgtggtggatgagcacgtgtggtggaaggactattttatctaagtgaaattcttttagggttttttttgcata
More
|
||||||||||
| CDS seq | atgcatccaagtggtcaagctctacattctaaggtgtcgactattgcgagacataactcagctaaccaaggaaattcggtggcactaactgaggtgttcaagcacaatagcattgataatgcactgcaaagtgttgttggacacaagagaaaggtgcatgatctaacaccaaaggagaatataagacgtgaagatacacattctagggcaaagaagattgggaaggccagacccgattctccatatgctaacttcaccaatagccaactgttaacaacttcccggttctag |
||||||||||
| Protein seq | MHPSGQALHSKVSTIARHNSANQGNSVALTEVFKHNSIDNALQSVVGHKRKVHDLTPKENIRREDTHSRAKKIGKARPDSPYANFTNSQLLTTSRF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0016340 | OsLima_07g0016340.01 | Chr07 | 20614250 | 20617787 | - | NAM | ||
| CDS seq | atgcatccaagtggtcaagctctacattctaaggtgtcgactattgcgagacataactcagctaaccaaggaaattcggtggcactaactgaggtgttcaagcacaatagcattgataatgcactgcaaagtgttgttggacacaagagaaaggtgcatgatctaacaccaaaggagaatataagacgtgaagatacacattctagggcaaagaagattgggaaggccagacccgattctccatatgctaacttcaccaatagccaactgttaacaacttcccggttctag
More
|
|||||||
| Protein seq | MHPSGQALHSKVSTIARHNSANQGNSVALTEVFKHNSIDNALQSVVGHKRKVHDLTPKENIRREDTHSRAKKIGKARPDSPYANFTNSQLLTTSRF |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0016340 | OsLima_07g0016340.02 | Chr07 | 20614362 | 20617691 | - | IsoSeq | ||
| CDS seq | gatcgcgtgagagaagaaaaaacgctagaaaaaaaaatcatccatcgccgcttgcgactccgagcggcgccaccgccgccaccgccgccgtctgccaccgccaccgccgccgcctgccaccgcgccgccgccgccgccctctgctgccgccgctctactccccggatctacacacaccatcctgcttcgctcccgttccatgcccaaaacttgcatatcacttgcgcctcaaacaagcta
More
|
|||||||
| Protein seq | DRVREEKTLEKKIIHRRLRLRAAPPPPPPPSATATAAACHRAAAAALCCRRSTPRIYTHHPASLPFHAQNLHITCASNKL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 20615575 | 20617290 | - | OsLima_07g0016340.02 | OsLima_07g0016340.01,OsLima_07g0016340.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.755963 | 0.514816 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0516500 | RBH | 6.959144 | 5.052111 | 2.450795 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g33300 | RBH | 5.109636 | 3.618816 | 1.285116 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0516500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029960 | SBH | 4.617792 | 18.945438 | 16.862907 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030030 | SBH | 1.344943 | 4.817396 | 6.770451 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029890 | SBH | 9.391886 | 16.587772 | 34.958527 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029490 | SBH | 1.624338 | 0.340346 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0016650 | RBH | 23.379528 | 8.361992 | 29.404783 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0325900 | RBH | 15.5172115 | 38.874918 | 90.3779985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0017110 | RBH | 1.600540 | 0.790671 | 2.055592 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0339200 | RBH | 17.6567645 | 67.2459255 | 34.3706515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0008070 | RBH | 0.326760 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007890 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0016530 | RBH | 32.572941 | 18.956499 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0016780 | RBH | 3.799087 | 1.021556 | 3.592230 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007880 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029950 | SBH | 3.510488 | 2.912572 | 5.469629 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029720 | SBH | 18.657537 | 61.609947 | 25.901598 |
