Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os07g33300 | OGI:07055520 | 12/16 | Nipponbare | IRGSP 1.0 | MSU | Chr07:19905025-19909628 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATGATAGAATCGTAACATAAATAAATCCATAATACTGTATCATGGTAATAGTGCCCCAACAGACTAACAGCTTAATAAAGTTTATAAGGTATGCATAGGAAAATTAAAAGGGTAAGTATATGGCTCTTAACCCATACAAGGCGAGTACACAGCCAACAAATTCATGACAAAAACTCCTAAACATGAGAAAAATTCCAATCAGCAAGCTAGGTTATTATCCCATTGATCGTTGTTTGCTTCATTTGGTTGTCCAATATCACCACTAAAAAGAGCATGATCATCCATATCCAGGTGGTGCATTTCCATCTTCAGAATTCCCATCATCATCAAGAAGATTAGCTTCATCCACACTTACTAGTTCTTTCTCTGTTATGTCAATTTTATGTTGAATATGACTAAGAAAAAAGAAAGTTATATACAACATATCATTATAGTTTGCTCCTATATTTCAGCAGCACAGGAATCCTCTTGAGATTGTGGTTGTTCTACTGGCACATCTGGCAGTAGTGGTTCTGGAGTGGATAAAGAATCCATTGCTGCAAATGGATGAACATGGGGTCACAAATCTAATGGAGAAGAAAACAAATCAGCAGCAAATCAAGTTCATCGTATATGCAATACCAATTTTAGACTAGATTGATGGAACAAATCAAACATCTACAGCCGAGCTAACTACTAACTAGCAACAAATCTGGTGTAAACAACTAGTCAACTACACATGCACATACCTTTCTTGAGGCTAGAACAAGAAGCAGCTAGCACTAGCAGTGGCGTGTCCTTGAGCCTTGACCCCTTGTGCACACCTTACCACCAGGCTTGCTGATCAGTTGCTCTGCTGCCGACATGAAGACCGCCAGCACCTCACACTACAGGATGGATAGGATTTGGAGGCATTTAAGAATGCCTCAACTATTAAAAAAAATGCCTCCAATACTTAAAAAAGGCACTTAAAAAAGTGTTGGATATACTGCTGTAGGAAAAGACATTTTAAGGCACTTTTTTAAAATGCCTTCATAAGTATAGATGAAGGCACTTTTTGATTGCCTTTAAACACATTTGAGGCACTTTTTAGAATGCCTTTATACACATTTGAGGCATTTGGACTTGTGCCAATAATTTCTTCCGAGGTATTTTAACATATGCCCCTAATTTATTTTCAAGGCATTTTTTACAATGCCTTTACTTTTCTTTTTAGGCACATTATTAAAATGCCTCAAATAGTACAGTACATGCATATATAGGCTCATCCCACCATATGAATGTTTTAACAGGAAATAACATAACACATCACATATATCTCCAAAAACAATATAGAAGAATAATTCCCAATTCCAATTCAATCGCACATTAAGTGGTTCACAAATCATCTCAATGGTAATTAAGTTTGTAAGATATGCTATCACAATCAATGGTATATTTATGATTTACAAGACAATAAACATCATTGATCTACTGAGTGGCTTGCCCCTGTCATCCTGTGAGGCTCGCATGTATTTGCAATGAGGAAAAACACAACCTGAGAATGGATTACACCAAAACCTGTCCATGCATTTGGACCTGCAAAAGAAAAACATGTAAGTTTCTATATCGATTTTCAATATATATATATATACATGCGTGTTGCAATATATACATTTGCATTCAGGTGCCTATCATATCCATGCTACAAAGTCATGTTAGACATCATCTTGCACATGGCGATTAGAGGGCAAAGTAGCAAATCACAACATGAGAAGAGGTAAACCAACATCTTTTCATCCAACCTTGCAGGGCAAAGTATGGGAATTAATCCCGGCCATAACATAACATCCATTGCCATCAAAATATAAGAACCAGTTTCATAGTAATTCATAACATACCATGCATATTTCCTATTATTTACACAAACAAGATTGAGCTCATGAACTATAGTTCTTTAAGAATAAACAGATGCAGCAGCAACACCTACAAAGCATATCACTAGGATTAATATTCATTTGCTAGAACTCCTGTACTCATTAATCACCTAAATATAATACATTGTCCACATATGATTGCAAAAAGAATTAAGAGATGGAGAGAGGGAGTGAGGGGCAATTTACTTGAGCTAGAACCGGGAAGTTGTTAACAGTTGGCTATTGGTGAAGTTAGCATATGGAGAATCGGGTCTGGCCTTCCCAATCTTCTTTGCCCTAGAATGTGTATCTTCACGTCCTATATTCTCCTTTGGTGTTAGATCATGCACCTTTCTCTTGTGTCCAACAACACTTTGCAGTGCATTATCAATGCTATTGTGCTTGAACACCTCAGTTAGTGCCACCGAATTTCCTTGGTTAGCTGAGTTATGTCTCGCAATAGTCGACACCTTAAATTGAGTGAAAATCATATTTAACATCCAGATTACCACATATAGCAATATCACTCTAATTTTGACTTAAATGTACTAGTAACAATTAGTGAAATATGCAGTACCTTAGAATGTAGAGCTTGACCACTTGGATGCATTAGCTGCAATGTAATTTTAAAAAATTAGTTGCATGTAAATAAGCTAGAAAAATGAACTAATAGCATCATACATTGTCACGTGGCCATGGGATGCATCGAGCTTGAGCACTTCCTAACTTGCTGATCATTCCATATGCACGAGGTATTATGGTGTGCTGATTGAATACAGTGTTAACAAGGATGTCAACACAATCATTTAGTGCCTGGCCATCAACAGAAATAGCGTTTTTGCAACCTGGATATAACTCTTGACTTCCATCATTTACCAACTTATAATATGCTTCAGCATCAACATCCAAATCATCTTCTGCCCCATCATCTGTCCCTAAAGTACGACTGTCGTACATCCCAAGGCCTTCGAGCAGCATTTGGTCCATGTCATCATTTTGTTCATGATGTGAACTTGAGGCAACACTTGGCTTGGAAGTCGACATGCTTTCTCCATGATGAATCCATGAGGTATACCCGGCCAAAAACCCATCACAAATCAAATGCTCACGAACCTTATGTTCACCTAACCAATATCTATTTCCACAGTTCTTACAAGGGCAGATGATTCTATTGTTGTGGGCTGAATTGGATAAGGCGAATTCTATAAATTTATCAACCCCGATATTATATTCAGCACTAGATCTAGATGTTTTCATCCAATCCTTATCCATGGTAAATTCAATTAATATTACCTAGTAACATAGATGAAAATACAGATTGCACCATTAGTTTATAATAATACTAAAATATGGGGTTAAATGAATCACTGATTAATAATGCATTAATGCCTATGCAAGCATCTAAACCATCTCCACATCCAGCTCAACACCAAACATCTACTAAACAGTTCAGTTCCATTCACCAACTAATAAAAATCTTTTGGTAAATACAAGAGACCAAAAAAGTATTTTATGAACATTATTTCACTAAGCATAAACAAGCTAGCACAGGACAACCTTGTAAAACCCCCTAAAAACACCCAAATTGGGTCAGTGTGACAAATGATAATATAGTACTATGGGTAGATGTGTATCAGTGCATTCAGACAATACTAGATTTTTTTTAAATAAATCTTCTGATTCATGCATAAATAACTGTTATTCATGAAAAATCATTTTTCTGTGTCAACTTGTTTAGATTCAGATGATTTGCATATAGTGACGTGCTTTTGGTTGAAATTCATCAAGAACAGTGGTTGGTCAGGCTATTGTAGTATATTGGAAGTTGGATTGTTTGATCTACAGGCTGCACTGCACCCTTTTGCATGGGAATGATTTCAATCAGCATAATACATAGATCTCAACAACCGCATGTAACCAAAATATTCAGTTTGAGTAATATTCAGATTCTCCAAATATAATACATCCTATAATCATTTATAATACGTCCTATAATTTTCTACAACCATAGATTTATATACAGGAATGATACTTCTGCAATATGGTACTTAGGAAGTTTCATGATTCACAACTGAACAACTGGTAACTCCAATTTTCTAAATTAAATAATACTAATGATATCGAATGGTGATTTCACACTCTAGAGCAGACTAGGATTAAATAAATATATTTAAAATCTCAAACTGCAGGGTAAAAAAACAATAATAGATCATATATAAGGAGATTCTCCAGTAAAACATTATGTATTCTAGAGCTAATAAGTCAAAGTAGATCGATCATCTCATGACAAATCAAAGTATACATCACAAATTTTAGTTCATATACTCACAGTATAAAGGCAGCAACGGTAGATCCCAAAGTGGCTCGGCTCGACTAGGATGAAGAAAGTGGAGGCGCGACTCCGGATCCAACAGCGAGAGACGACACCGGGACTGGAGATGGTGCCGGCGGAGGGAGCAGCAAGCGCCCCCCTCCCCCCGACGACTACCCTAGCTTGTTTGAGGCGCAAGTGATATGCAAGTTTTGGGCATGGAACGGGAGCGAAGCAGGATGGTGTGTGTAGATCCGGGGAGTAGAGCGGCGGCAGCAGAGGGCGGCGGCGGCGGCGCGGTGGCAGACGGCGGCGGTGGCGGTGGCAGACGGCGGTGGTGGCGGCGGTGGCGCCGCTCGGAGTCGCAAGCGGCGATGGATGATTTTTTTTTTCTAGCGTTTTTTCTTCTCTCACGCGA
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| CDS seq | ATGGATAAGGATTGGATGAAAACATCTAGATCTAGTGCTGAATATAATATCGGGGTTGATAAATTTATAGAATTCGCCTTATCCAATTCAGCCCACAACAATAGAATCATCTGCCCTTGTAAGAACTGTGGAAATAGATATTGGTTAGGTGAACATAAGGTTCGTGAGCATTTGATTTGTGATGGGTTTTTGGCCGGGTATACCTCATGGATTCATCATGGAGAAAGCATGTCGACTTCCAAGCCAAGTGTTGCCTCAAGTTCACATCATGAACAAAATGATGACATGGACCAAATGCTGCTCGAAGGCCTTGGGATGTACGACAGTCGTACTTTAGGGACAGATGATGGGGCAGAAGATGATTTGGATGTTGATGCTGAAGCATATTATAAGTTGGTAAATGATGGAAGTCAAGAGTTATATCCAGGTTGCAAAAACGCTATTTCTGTTGATGGCCAGGCACTAAATGATTGTGTTGACATCCTTGTTAACACTGTATTCAATCAGCACACCATAATACCTCGTGCATATGGAATGATCAGCAAGTTAGGAAGTGCTCAAGCTCGATGCATCCCATGGCCACGTGACAATCTAATGCATCCAAGTGGTCAAGCTCTACATTCTAAGGTGTCGACTATTGCGAGACATAACTCAGCTAACCAAGGAAATTCGGTGGCACTAACTGAGGTGTTCAAGCACAATAGCATTGATAATGCACTGCAAAGTGTTGTTGGACACAAGAGAAAGGTGCATGATCTAACACCAAAGGAGAATATAGGACGTGAAGATACACATTCTAGGGCAAAGAAGATTGGGAAGGCCAGACCCGATTCTCCATATGCTAACTTCACCAATAGCCAACTGTTAACAACTTCCCGGTTCTAG
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| Protein seq | MDKDWMKTSRSSAEYNIGVDKFIEFALSNSAHNNRIICPCKNCGNRYWLGEHKVREHLICDGFLAGYTSWIHHGESMSTSKPSVASSSHHEQNDDMDQMLLEGLGMYDSRTLGTDDGAEDDLDVDAEAYYKLVNDGSQELYPGCKNAISVDGQALNDCVDILVNTVFNQHTIIPRAYGMISKLGSAQARCIPWPRDNLMHPSGQALHSKVSTIARHNSANQGNSVALTEVFKHNSIDNALQSVVGHKRKVHDLTPKENIGREDTHSRAKKIGKARPDSPYANFTNSQLLTTSRF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g33300 | LOC_Os07g33300.1 | Chr07 | 19905025 | 19909628 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATAAGGATTGGATGAAAACATCTAGATCTAGTGCTGAATATAATATCGGGGTTGATAAATTTATAGAATTCGCCTTATCCAATTCAGCCCACAACAATAGAATCATCTGCCCTTGTAAGAACTGTGGAAATAGATATTGGTTAGGTGAACATAAGGTTCGTGAGCATTTGATTTGTGATGGGTTTTTGGCCGGGTATACCTCATGGATTCATCATGGAGAAAGCATGTCGACTTCCAAGCCAAGTGTTGCCTCAAGTTCACATCATGAACAAAATGATGACATGGACCAAATGCTGCTCGAAGGCCTTGGGATGTACGACAGTCGTACTTTAGGGACAGATGATGGGGCAGAAGATGATTTGGATGTTGATGCTGAAGCATATTATAAGTTGGTAAATGATGGAAGTCAAGAGTTATATCCAGGTTGCAAAAACGCTATTTCTGTTGATGGCCAGGCACTAAATGATTGTGTTGACATCCTTGTTAACACTGTATTCAATCAGCACACCATAATACCTCGTGCATATGGAATGATCAGCAAGTTAGGAAGTGCTCAAGCTCGATGCATCCCATGGCCACGTGACAATCTAATGCATCCAAGTGGTCAAGCTCTACATTCTAAGGTGTCGACTATTGCGAGACATAACTCAGCTAACCAAGGAAATTCGGTGGCACTAACTGAGGTGTTCAAGCACAATAGCATTGATAATGCACTGCAAAGTGTTGTTGGACACAAGAGAAAGGTGCATGATCTAACACCAAAGGAGAATATAGGACGTGAAGATACACATTCTAGGGCAAAGAAGATTGGGAAGGCCAGACCCGATTCTCCATATGCTAACTTCACCAATAGCCAACTGTTAACAACTTCCCGGTTCTAG
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| Protein seq | MDKDWMKTSRSSAEYNIGVDKFIEFALSNSAHNNRIICPCKNCGNRYWLGEHKVREHLICDGFLAGYTSWIHHGESMSTSKPSVASSSHHEQNDDMDQMLLEGLGMYDSRTLGTDDGAEDDLDVDAEAYYKLVNDGSQELYPGCKNAISVDGQALNDCVDILVNTVFNQHTIIPRAYGMISKLGSAQARCIPWPRDNLMHPSGQALHSKVSTIARHNSANQGNSVALTEVFKHNSIDNALQSVVGHKRKVHDLTPKENIGREDTHSRAKKIGKARPDSPYANFTNSQLLTTSRF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os07g33300 | LOC_Os07g33300.2 | Chr07 | 19906175 | 19909628 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATAAGGATTGGATGAAAACATCTAGATCTAGTGCTGAATATAATATCGGGGTTGATAAATTTATAGAATTCGCCTTATCCAATTCAGCCCACAACAATAGAATCATCTGCCCTTGTAAGAACTGTGGAAATAGATATTGGTTAGGTGAACATAAGGTTCGTGAGCATTTGATTTGTGATGGGTTTTTGGCCGGGTATACCTCATGGATTCATCATGGAGAAAGCATGTCGACTTCCAAGCCAAGTGTTGCCTCAAGTTCACATCATGAACAAAATGATGACATGGACCAAATGCTGCTCGAAGGCCTTGGGATGTACGACAGTCGTACTTTAGGGACAGATGATGGGGCAGAAGATGATTTGGATGTTGATGCTGAAGCATATTATAAGTTGGTAAATGATGGAAGTCAAGAGTTATATCCAGGTTGCAAAAACGCTATTTCTGTTGATGGCCAGGCACTAAATGATTGTGTTGACATCCTTGTTAACACTGTATTCAATCAGCACACCATAATACCTCGTGCATATGGAATGATCAGCAAGTTAGGAAGTGCTCAAGCTCGATGCATCCCATGGCCACGTGACAATCTAATGCATCCAAGTGGTCAAGCTCTACATTCTAAGGTGTCGACTATTGCGAGACATAACTCAGCTAACCAAGGAAATTCGGTGGCACTAACTGAGGTGTTCAAGCACAATAGCATTGATAATGCACTGCAAAGTGTTGTTGGACACAAGAGAAAGGTGCATGATCTAACACCAAAGGAGAATATAGGACGTGAAGATACACATTCTAGGGCAAAGAAGATTGGGAAGGCCAGACCCGATTCTCCATATGCTAACTTCACCAATAGCCAACTGTTAACAACTTCCCGGTTCTAG
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| Protein seq | MDKDWMKTSRSSAEYNIGVDKFIEFALSNSAHNNRIICPCKNCGNRYWLGEHKVREHLICDGFLAGYTSWIHHGESMSTSKPSVASSSHHEQNDDMDQMLLEGLGMYDSRTLGTDDGAEDDLDVDAEAYYKLVNDGSQELYPGCKNAISVDGQALNDCVDILVNTVFNQHTIIPRAYGMISKLGSAQARCIPWPRDNLMHPSGQALHSKVSTIARHNSANQGNSVALTEVFKHNSIDNALQSVVGHKRKVHDLTPKENIGREDTHSRAKKIGKARPDSPYANFTNSQLLTTSRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.109636 | 3.618816 | 1.285116 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0516500 | RBH | 6.959144 | 5.052111 | 2.450795 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g03884 | SBH | 1.236822 | 1.350661 | 0.543773 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0516500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0016650 | RBH | 23.379528 | 8.361992 | 29.404783 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0325900 | RBH | 15.5172115 | 38.874918 | 90.3779985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0017110 | RBH | 1.600540 | 0.790671 | 2.055592 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0339200 | RBH | 17.6567645 | 67.2459255 | 34.3706515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0016340 | RBH | 0.755963 | 0.514816 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0016530 | RBH | 32.572941 | 18.956499 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0016780 | RBH | 3.799087 | 1.021556 | 3.592230 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
