Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0008070 | OGI:07055520 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:12921958-12924430 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctcatcccaccatatgaatgttttaacaggaaataacataacacatcacatatatctccaaaaacaatatagaacaataattcccaattccaattcaatcgcacattaagtggttcacaaatcatctcaatggtaattaagtttgtaagatatgctatcacaatcaatggtatatttatgatttacaagacaataaacatcattgatctactgagtggcttgcccctgtcatcctgtgaggctcgcatgtatttgcaatgaggAaaaacacaacctgagaatggattacaccaaaacctgtccatgcatttggacctgcaaaagaaaaacatgtaagtttctatatcgattttcaatatatatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatgcgtgttgcaatatatacatttgcattcaggtgcctatcatatccatgctacaaagtcatgttagacatcatcttgcacatggcgattagagggcaaagtagcaaatcacaacatgagaagaggtaaaccaacatcttttcatccaaccttgcagggcaaagtatgggaattaatcccggccataacataacatccattgccatcaaaatataagaaccagtttcatagtaattcataacataccatgcatatttcctattatttacacaaacaagattgagctcatgaactatagttctttaagaataaacagatgcagcagcaacacctacaaagcatatcactaggattaatattcatttgctagaactcctgtactcattaatcacctaaatataatacattgtccacatatgattgcaaaaagaattaagagatggagagagggagtgaggggcaatttacttgagctagaaccgggaagttgttaacagttggctattggtgaagttagcatatggagaatcgggtctggccttcccaatcttctttgccctagaatgtgtaacttcacgtcctatattctcctttggtgttagatcatgcacctttctcttgtgtccaacaacactttgcagtgcattatcaatgctattgtgcttgaacacctcagttagtgccaccgaatttccttggttagctgagttatgtctcgcaatagtcgacaccttaaattgagtgaaaatcatatttaacatccagattaccacatatagcaatatcactctaattttgacttaaattaccacATatagcaatagctcaccgccaccatgaatcacgtcgcaaagcggttctccttatagtgtgccaccagggacatatggctcaggtctttcttaaccatctcatctataataatgcatttattgttaagatttgcataacaggaagtaccggtgttaaagtcaagtaatgtatcaaggaactcaaataattgtttgtcagtaaacatctttcaaagtttacaccaaatgtacacggacaatggttgtgtccatgcaatgctttaagtgaccatgttgggtacaccaatataatggaatgatagggtaaaaaaacataatataacttctggtatatatctctactgtttgcattttaaataatgcagttgaaagactaagaatcgaacattaggcccaccaactataagagaagaacaaagcaccagacagttattttcatggtaagaagtggaataacatccccatctgcacacaacatttcagtaaatagtttaaatggaTttttattcttatgagtaaaatacaaacagtataagcataatcaccatgcactctcgcgtgataaagtagatgatggatggaggaatgtcgggcgatctgatttacaaatcaggttagcaagctgcaatttgatttacagtcatcatgaattaacgcgcaaatatccggatctacagtcgaacacaaaacctacaattAaaaatcaatttcggttcaacaaaaattccagttgctagcttacctatgaatttggacttggaTttttttatccaatcacaggaactctgcaatccacattcgccggatgcatgcaaatcgaccgcacattGAgaacagactcgtgatattcagataacatacatatatgtcatttatcagttttatcatattaatcatgcaTtttctttttgtttgatccatgttatgaatatcaattgcagacatggatcctggactctgcctgtccccatcatttgaccggttctaggaaaggattcccagaagtaccatccggttgataagatgctgcacacgccaaaaggagaaccgcttgaagtaatacaataaggtcagaaaaagtcagacaaagtgaagctgaaaaaggtatactacgtacctggctcagaacataatttgatgttagtagctcagctagacctggaaggataccgattttctttccacgaagggctctgtgatatcttctggcaaaatactcccatgggcacat
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| CDS seq | atgtgcccatgggagtattttgccagaagatatcacagagcccttcgtggaaagaaaatcggtatccttccaggtctagctgagctactaacatcaaattatgttctgagccaggtgtcgactattgcgagacataactcagctaaccaaggaaattcggtggcactaactgaggtgttcaagcacaatagcattgataatgcactgcaaagtgttgttggacacaagagaaaggtgcatgatctaacaccaaaggagaatataggacgtgaagttacacattctagggcaaagaagattgggaaggccagacccgattctccatatgctaacttcaccaatagccaactgttaacaacttcccggtccaaatgcatggacaggttttggtgtaatccattctcaggttgtgttttTcctcattgcaaatacatgcgagcctcacaggatgacaggggcaagccactcagtagatcaatgatgtttattgtcttgtaa
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| Protein seq | MCPWEYFARRYHRALRGKKIGILPGLAELLTSNYVLSQVSTIARHNSANQGNSVALTEVFKHNSIDNALQSVVGHKRKVHDLTPKENIGREVTHSRAKKIGKARPDSPYANFTNSQLLTTSRSKCMDRFWCNPFSGCVFPHCKYMRASQDDRGKPLSRSMMFIVL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0008070 | OsLima_09g0008070.01 | Chr09 | 12921958 | 12924430 | - | NAM | ||
| CDS seq | atgtgcccatgggagtattttgccagaagatatcacagagcccttcgtggaaagaaaatcggtatccttccaggtctagctgagctactaacatcaaattatgttctgagccaggtgtcgactattgcgagacataactcagctaaccaaggaaattcggtggcactaactgaggtgttcaagcacaatagcattgataatgcactgcaaagtgttgttggacacaagagaaaggtgcatgatctaacaccaaaggagaatataggacgtgaagttacacattctagggcaaagaagattgggaaggccagacccgattctccatatgctaacttcaccaatagccaactgttaacaacttcccggtccaaatgcatggacaggttttggtgtaatccattctcaggttgtgttttTcctcattgcaaatacatgcgagcctcacaggatgacaggggcaagccactcagtagatcaatgatgtttattgtcttgtaa
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| Protein seq | MCPWEYFARRYHRALRGKKIGILPGLAELLTSNYVLSQVSTIARHNSANQGNSVALTEVFKHNSIDNALQSVVGHKRKVHDLTPKENIGREVTHSRAKKIGKARPDSPYANFTNSQLLTTSRSKCMDRFWCNPFSGCVFPHCKYMRASQDDRGKPLSRSMMFIVL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0008070 | OsLima_09g0008070.02 | Chr09 | 12922012 | 12923097 | - | IsoSeq | ||
| CDS seq | atggacaggttttggtgtaatccattctcaggttgtgttttTcctcattgcaaatacatgcgagcctcacaggatgacaggggcaagccactcagtagatcaatgatgtttattgtc |
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| Protein seq | MDRFWCNPFSGCVFPHCKYMRASQDDRGKPLSRSMMFIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr09 | 12922273 | 12922868 | - | OsLima_09g0008070.02 | OsLima_09g0008070.01,OsLima_09g0008070.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.326760 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006270 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0212500 | RBH | 0.044859 | 1.5995885 | 0.2515355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0008130 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0193400 | RBH | 0.0256795 | 2.3768115 | 0.088536 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0016340 | RBH | 0.755963 | 0.514816 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007890 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007800 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0051520 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007880 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
