Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0027210 | OGI:06026330 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:30395215-30396018 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctagcagataggtgaggttattgcatgtttttgagcatctgaagtgtatttgtgatattggtaaaagagttgttggtaattgaaaggaaggagaggaactttaggatagtttagatcgcctattctttgtgagatatgcccatgaaagcggttgaaagccagccataacgcaatgagattgctggaggagtagatgctttcatgaattgtaacagtgaagttattcatggaaaaattgggaattttgagatccaacattgtggagtggactttgccaagatctccagtaaatcgattgcctctgagggtaatgaatctgagatttgtgcggttacctagtgctgatggcagctcacctaccatgttattgttgtctaagtggagctcctccaatcttctcaactggcctatagagttctttttattcaactggcctatagagtttgggatcttgccactgatcccagttgatccaagatcaaggacagtcagaatgtcagattaccaagtttgactatgtgataactatcaagaactccttgtaaaggaaaagagaggtgctccaatgatgtataactgaagagctcattagggatagctccagtaacgttgtgtgtccatccttgagcactctcaacatggaacaattgcgtacttttggggaaattctgcatctgaattggttgcaccaaatgaccaaagatcaagcactgcaaatgatggggtgctgatgcagatagatgctggtatctgtcctgtaaagctgttgttacttgcattcagagcaaccaggtttttcatcat
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| CDS seq | atgatgaaaaacctggttgctctgaatgcaagtaacaacagctttacaggacagataccagcatctatctgcatcagcaccccatcatttgcagtgcttgatctttggtcatttggtgcaaccaattcagatgcagaatttccccaaaatggcaagatcccaaactctataggccagttgaataaaaagaactctataggccagttgagaagattggaggagctccacttagacaacaataacatggtaggtgagctgccatcagcactaggtaaccgcacaaatctcagattcattaccctcagaggcaatcgatttactggagatcttggcaaagtccactccacaatgttggatctcaaaattcccaatttttccatgaataacttcactgttacaattcatgaaagcatctactcctccagcaatctcattgcgttatggctggctttcaaccgctttcatgggcatatctcacaaagaataggcgatctaaactatcctaaagttcctctccttcctttcaattaccaacaactcttttaccaatatcacaaatacacttcagatgctcaaaaacatgcaataacctcacctatctgctag
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| Protein seq | MMKNLVALNASNNSFTGQIPASICISTPSFAVLDLWSFGATNSDAEFPQNGKIPNSIGQLNKKNSIGQLRRLEELHLDNNNMVGELPSALGNRTNLRFITLRGNRFTGDLGKVHSTMLDLKIPNFSMNNFTVTIHESIYSSSNLIALWLAFNRFHGHISQRIGDLNYPKVPLLPFNYQQLFYQYHKYTSDAQKHAITSPIC |
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| Function | Tyrosine-sulfated glycopeptide receptor 1 [UniProtKB/Swiss-Prot:Q9C7S5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0027210 | OsLima_06g0027210.01 | Chr06 | 30395215 | 30396018 | - | NAM | ||
| CDS seq | atgatgaaaaacctggttgctctgaatgcaagtaacaacagctttacaggacagataccagcatctatctgcatcagcaccccatcatttgcagtgcttgatctttggtcatttggtgcaaccaattcagatgcagaatttccccaaaatggcaagatcccaaactctataggccagttgaataaaaagaactctataggccagttgagaagattggaggagctccacttagacaacaataacatggtaggtgagctgccatcagcactaggtaaccgcacaaatctcagattcattaccctcagaggcaatcgatttactggagatcttggcaaagtccactccacaatgttggatctcaaaattcccaatttttccatgaataacttcactgttacaattcatgaaagcatctactcctccagcaatctcattgcgttatggctggctttcaaccgctttcatgggcatatctcacaaagaataggcgatctaaactatcctaaagttcctctccttcctttcaattaccaacaactcttttaccaatatcacaaatacacttcagatgctcaaaaacatgcaataacctcacctatctgctag
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| Protein seq | MMKNLVALNASNNSFTGQIPASICISTPSFAVLDLWSFGATNSDAEFPQNGKIPNSIGQLNKKNSIGQLRRLEELHLDNNNMVGELPSALGNRTNLRFITLRGNRFTGDLGKVHSTMLDLKIPNFSMNNFTVTIHESIYSSSNLIALWLAFNRFHGHISQRIGDLNYPKVPLLPFNYQQLFYQYHKYTSDAQKHAITSPIC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.471825 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0587900 | SBH | 0.422553 | 0.000000 | 0.260348 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g47760 | SBH | 0.251476 | 0.116737 | 0.056122 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0587900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020770 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0027100 | RBH | 0.175343 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020820 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026820 | SBH | 0.000000 | 0.058143 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027310 | SBH | 0.099973 | 5.621058 | 0.116741 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0454500 | RBH | 1.3124905 | 9.598031 | 4.1137915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026710 | RBH | 0.026854 | 0.871099 | 0.034093 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0436800 | SBH | 0.439463 | 3.891713 | 1.3423215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004180 | SBH | 0.043297 | 0.057747 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027280 | RBH | 0.0 | 1.284371 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026870 | SBH | 0.000000 | 8.898803 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004210 | SBH | 0.087713 | 0.227309 | 0.100002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027110 | SBH | 0.071356 | 3.468843 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027030 | SBH | 0.073483 | 1.636936 | 0.193245 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027120 | SBH | 0.0 | 2.179937 | 0.302101 |
