Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_06g0020780 | OGI:06063770 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr06:24331974-24333933 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgttgtacatggattacaatcttttaacgggtgatatacccccagtgattggaaatttgcacaacttggttgttctagccgttgcccaaaacaaattatcaggtcaaatccctgatacgattggcaaccttgttaagctaactgacctgaagttggataggaataactttagtggaggaatacctgtgactctagagcattgtactcaactggaaatactcaaccttgcccaGggagaataccaaaccagatcttcaaaatttcctccttttcccaggagttggacctgtcacacaactacttatatggaggaataccagaggaagttggcaatctcattaatctgaaaaaacttagcatctcagacaacaggttgtccggcaacattccatccactctcggccagtgtgttgttctggagtctcttgagatgcaaagcaacttatttgcaggaagcataccaaattcttttgagaacttggtaggcatccagaagttagatatttcacggaacaacatgtccggaaaaataccagattttcttggaaacttcagtttactatatgatctcaatttatcattcaacaattttgatggagaagttccagcagacggtatttttcgtaatgctagtgtggtgtcaatggaagggaataatggcttatgtgcaagaacattaatagaagggatacctctttgctcaacacaggttcacaggaaaagaagacacaagtctctggttctagtcctagtgatagtaataccaattatatctattgctatcatttgtttaagcttttctgtatttctttggaggaagataatacaggtgaagccaaatttgccacaatgtaatgagcataagttgaagaatataacatacggagacattgccaaggcgacgaatatgttttcttcagataacttaattggttcaggatcatttgcaatggtttacaagggtaatctagagcttcaggaagacgaagttgctataaagatttttaaccttggtacatatggagcacataatagcttcattgcagagtgtgaaacactaagaaatgtccgccatcgaaatcttgtgaaaatagtgactttatgttcttcagtggatgccactggggcagacttcaaagccctggtgttccaatacatgcgaaatgggaacctagacacatggctacatccaaaggctcatgaacttagtcaaagaaaggctctaactattagccaaagagttaatatagccttggatgtggcgtttgctttagattatcttcataaccagtgtgcaactccactaatacattgtgacttaaagccaagcaatattcttttggacctcgacatggttggatatgtcagtgactttggcctaacaagatttaaatgcaatagattgactgccaatcaagatacctcgacaagtttgccttgcctaaaaggatcaatcggatacattccgccaggtagatgagcttctaaatttttggctcaatttgttctttattatatactagtatgaaatcagagcctagcatctagttttataacgtctgtaaatctaatgcagattatggcatgagaaaggatatctcaaccaagggtgacgtctacagttttggaatacttttgttagaaattattactgggagaatcccaactgatgaaatatttaatggaagcacaaccctgcatgaatttgttgacagagcatttcccaataatatcagcaaggtaattgatccaacaatgctacaagatgacctggaagcaactgacgtgatggagaattatatcattcctttgatcaaaataggcctatcttgttctatgccactaccaaaagaacgaccagaaatGggacaagtttctaccatgattcttgaaatcaagaactcagcctcgcacaggcatgttagatcaagctatgatttggcatattctatttcataa
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| CDS seq | atgttgtacatggattacaatcttttaacgggtgatatacccccagtgattggaaatttgcacaacttggttgttctagccgttgcccaaaacaaattatcaggtcaaatccctgatacgattggcaacctttggaggaatacctgtgactctagagcattgtactcaactggaaatactcaaccttgcccaGggagaataccaaaccagatcttcaaaatttcctccttttcccaggagttggacctgtcacacaactacttatatggaggaataccagaggaagttggcaatctcattaatctgaaaaaacttagcatctcagacaacaggttgtccggcaacattccatccactctcggccagtgtgttgttctggagtctcttgagatgcaaagcaacttatttgcaggaagcataccaaattcttttgagaacttggtaggcatccagaagttagatatttcacggaacaacatgtccggaaaaataccagattttcttggaaacttcagtttactatatgatctcaatttatcattcaacaattttgatggagaagttccagcagacggtatttttcgtaatgctagtgtggtgtcaatggaagggaataatggcttatgtgcaagaacattaatagaagggatacctctttgctcaacacaggttcacaggaaaagaagacacaagtctctggtgaagccaaatttgccacaatgtaatgagcataagttgaagaatataacatacggagacattgccaaggcgacgaatatgttttcttcagataacttaattggttcaggatcatttgcaatggtttacaagggtaatctagagcttcaggaagacgaagttgctataaagatttttaaccttggtacatatggagcacataatagcttcattgcagagtgtgaaacactaagaaatgtccgccatcgaaatcttgtgaaaatagtgactttatgttcttcagtggatgccactggggcagacttcaaagccctggtgttccaatacatgcgaaatgggaacctagacacatggctacatccaaaggctcatgaacttagtcaaagaaaggctctaactattagccaaagagttaatatagccttggatgtggcgtttgctttagattatcttcataaccagtgtgcaactccactaatacattgtgacttaaagccaagcaatattcttttggacctcgacatggttggatatgtcagtgactttggcctaacaagatttaaatgcaatagattgactgccaatcaagatacctcgacaagtttgccttgcctaaaaggatcaatcggatacattccgccagattatggcatgagaaaggatatctcaaccaagggtgacgtctacagttttggaatacttttgttagaaattattactgggagaatcccaactgatgaaatatttaatggaagcacaaccctgcatgaatttgttgacagagcatttcccaataatatcagcaaggtaattgatccaacaatgctacaagatgacctggaagcaactgacgtgatggagaattatatcattcctttgatcaaaataggcctatcttgttctatgccactaccaaaagaacgaccagaaatGggacaagtttctaccatgattcttgaaatcaagaactcagcctcgcacaggcatgttagatcaagctatgatttggcatattctatttcataa
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| Protein seq | MLYMDYNLLTGDIPPVIGNLHNLVVLAVAQNKLSGQIPDTIGNLWRNTCDSRALYSTGNTQPCPGRIPNQIFKISSFSQELDLSHNYLYGGIPEEVGNLINLKKLSISDNRLSGNIPSTLGQCVVLESLEMQSNLFAGSIPNSFENLVGIQKLDISRNNMSGKIPDFLGNFSLLYDLNLSFNNFDGEVPADGIFRNASVVSMEGNNGLCARTLIEGIPLCSTQVHRKRRHKSLVKPNLPQCNEHKLKNITYGDIAKATNMFSSDNLIGSGSFAMVYKGNLELQEDEVAIKIFNLGTYGAHNSFIAECETLRNVRHRNLVKIVTLCSSVDATGADFKALVFQYMRNGNLDTWLHPKAHELSQRKALTISQRVNIALDVAFALDYLHNQCATPLIHCDLKPSNILLDLDMVGYVSDFGLTRFKCNRLTANQDTSTSLPCLKGSIGYIPPDYGMRKDISTKGDVYSFGILLLEIITGRIPTDEIFNGSTTLHEFVDRAFPNNISKVIDPTMLQDDLEATDVMENYIIPLIKIGLSCSMPLPKERPEMGQVSTMILEIKNSASHRHVRSSYDLAYSIS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_06g0020780 | OsLima_06g0020780.01 | Chr06 | 24331974 | 24333933 | + | NAM | ||
| CDS seq | atgttgtacatggattacaatcttttaacgggtgatatacccccagtgattggaaatttgcacaacttggttgttctagccgttgcccaaaacaaattatcaggtcaaatccctgatacgattggcaacctttggaggaatacctgtgactctagagcattgtactcaactggaaatactcaaccttgcccaGggagaataccaaaccagatcttcaaaatttcctccttttcccaggagttggacctgtcacacaactacttatatggaggaataccagaggaagttggcaatctcattaatctgaaaaaacttagcatctcagacaacaggttgtccggcaacattccatccactctcggccagtgtgttgttctggagtctcttgagatgcaaagcaacttatttgcaggaagcataccaaattcttttgagaacttggtaggcatccagaagttagatatttcacggaacaacatgtccggaaaaataccagattttcttggaaacttcagtttactatatgatctcaatttatcattcaacaattttgatggagaagttccagcagacggtatttttcgtaatgctagtgtggtgtcaatggaagggaataatggcttatgtgcaagaacattaatagaagggatacctctttgctcaacacaggttcacaggaaaagaagacacaagtctctggtgaagccaaatttgccacaatgtaatgagcataagttgaagaatataacatacggagacattgccaaggcgacgaatatgttttcttcagataacttaattggttcaggatcatttgcaatggtttacaagggtaatctagagcttcaggaagacgaagttgctataaagatttttaaccttggtacatatggagcacataatagcttcattgcagagtgtgaaacactaagaaatgtccgccatcgaaatcttgtgaaaatagtgactttatgttcttcagtggatgccactggggcagacttcaaagccctggtgttccaatacatgcgaaatgggaacctagacacatggctacatccaaaggctcatgaacttagtcaaagaaaggctctaactattagccaaagagttaatatagccttggatgtggcgtttgctttagattatcttcataaccagtgtgcaactccactaatacattgtgacttaaagccaagcaatattcttttggacctcgacatggttggatatgtcagtgactttggcctaacaagatttaaatgcaatagattgactgccaatcaagatacctcgacaagtttgccttgcctaaaaggatcaatcggatacattccgccagattatggcatgagaaaggatatctcaaccaagggtgacgtctacagttttggaatacttttgttagaaattattactgggagaatcccaactgatgaaatatttaatggaagcacaaccctgcatgaatttgttgacagagcatttcccaataatatcagcaaggtaattgatccaacaatgctacaagatgacctggaagcaactgacgtgatggagaattatatcattcctttgatcaaaataggcctatcttgttctatgccactaccaaaagaacgaccagaaatGggacaagtttctaccatgattcttgaaatcaagaactcagcctcgcacaggcatgttagatcaagctatgatttggcatattctatttcataa
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| Protein seq | MLYMDYNLLTGDIPPVIGNLHNLVVLAVAQNKLSGQIPDTIGNLWRNTCDSRALYSTGNTQPCPGRIPNQIFKISSFSQELDLSHNYLYGGIPEEVGNLINLKKLSISDNRLSGNIPSTLGQCVVLESLEMQSNLFAGSIPNSFENLVGIQKLDISRNNMSGKIPDFLGNFSLLYDLNLSFNNFDGEVPADGIFRNASVVSMEGNNGLCARTLIEGIPLCSTQVHRKRRHKSLVKPNLPQCNEHKLKNITYGDIAKATNMFSSDNLIGSGSFAMVYKGNLELQEDEVAIKIFNLGTYGAHNSFIAECETLRNVRHRNLVKIVTLCSSVDATGADFKALVFQYMRNGNLDTWLHPKAHELSQRKALTISQRVNIALDVAFALDYLHNQCATPLIHCDLKPSNILLDLDMVGYVSDFGLTRFKCNRLTANQDTSTSLPCLKGSIGYIPPDYGMRKDISTKGDVYSFGILLLEIITGRIPTDEIFNGSTTLHEFVDRAFPNNISKVIDPTMLQDDLEATDVMENYIIPLIKIGLSCSMPLPKERPEMGQVSTMILEIKNSASHRHVRSSYDLAYSIS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0587200 | SBH | 0.0 | 0.0 | 0.350700 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38760 | SBH | 0.0 | 0.0 | 0.084983 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0587200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020780 | RBH | 0.134115 | 1.062366 | 0.983788 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020630 | SBH | 0.074796 | 1.559916 | 0.439633 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020770 | RBH | 0.061624 | 1.131939 | 2.054540 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020560 | SBH | 0.029425 | 0.109404 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020830 | RBH | 0.318380 | 0.370122 | 1.666568 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0365300 | SBH | 0.304308 | 1.722699 | 0.4225505 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020350 | SBH | 0.0 | 0.143358 | 0.151314 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0340900 | SBH | 0.542916 | 3.126143 | 1.807958 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0005510 | RBH | 0.065846 | 0.017877 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020820 | SBH | 0.0 | 1.012968 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020440 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021120 | SBH | 0.042714 | 0.133546 | 0.067458 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020640 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020500 | SBH | 0.204530 | 0.0 | 0.306192 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020770 | SBH | 0.0 | 0.0 | 0.240122 |
