Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0023870 | OGI:05070420 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:27209931-27214667 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcttcagtagttcagttagctggctgctgcccgcatgtgcaatggagcgttcaacgccgggaacaatggcggcacggtcgtggttgcttctcctctgcttcgtcgccgtcgccaccgccggagtgctccaagctcgtgcccaacctgacagcaacggtacattccaccatgtcctgtctttcaagttttgatccgcaactaggtagtgctgcttcacaatgaaatcaatgtgctagcgtgtgtaatatgcttggctgcaggtttcatcagcgtagactgtggcctcccggggaagacgggcttcgtggacgacaagaccatgatatcctacgcggcggacgacggcttcaccgacggcggcgcgtgccacaacatctcggcggagtacatcacgccggggctcgccaagcgctaccacaccctgcgcagcttcccggacggcaagcgcaactgctacacgctccggtcactcgtcgccgggctcaagtaccttttccgcgccaccttcttttacggcaactacgacggcctcaacaagctacccgtgtttgatctctacgtcggcgtcaactactggacgatggtgaacatcacgggccccggcgacgcggtgatcgtggaggccatcgtcgtcgtgccggatgacttcgtgcaggtctgcctggtgaacaccggcgccgggacgccgttcatctccgggttggacctgaggcctctcaagaacacgctctacccgcagtcgaacgccacgcagggccttgtcctcctcggccggctcaacttcggcccgaccgattacaccgacgtcataaggtaaatccaagcctcaatttaaattcatatcttacgttaaccatttccattatctaaaaaaaaattaagatcttagctgatcgattgatcgagctgcattgctgcaggtacccggatgatccgcacgacaggatatggttcccgtgggtggactcgaccaaatggagccagatatcatcgacgaagaaagtgcaggatctagacaacgacatgtacgagacgccgacggcggtgatgcagacggcgatcacgccgcggaacgcctccaggaacatcgagttctcctgggaccccgtgccgctgcccaacgacccgacgcccgggtacatcgccatcttccacttctccgagctgcagctcctccccggcaacgccgtgcgcgagttctacatcaacctcaacggcaagccgtggtccctgaccgccttcaagccggagtacctctacaacgacgccaccttcaaccggaacccattcctacggtacccgcagtacaacatctccatcaacgccaccgccaactcgacgctgccgccgctcatcaacgccgtcgaggtgttctccgtcatccccactgccaccattggcactgacccagaggacggtacgtgcgtgcgtgcacattggttgcagacacatgtaagattaattatcaagcatgtcatgcgtgtttgtgaaaattaatatgtgtgcacttggcagtggctgcaatcacggcgatcaaggagaagtatcaggtggtgaagaactggatgggtgacccatgtgttccgaagatgcttgcgtgggacaagttgacctgcagctatgccatttctaaccctgcaagaatcattggcctgtaagtaattcagtccatgtgtatcgagctagtaaggatttgtggtcatgaaaaaaaataaaagggggaaaaaatttaagttggagattattaattgcaaattgcaactgggtcatctgatcatactgtcttttgcagaaacctgtcctccagtggtttgagcggtgaggtatcgtcctatttcgggaatcttaaggctattcaaaacttgtatgttccgagttcacgatgttcacttgttaaaattatttgtggaatttcgtgttaaatttgaaaaatctcttgtccaatatcttgtagggatttgtcaaataataaattgacaggtccaattccagacgccctttcacagttaccttcattgacatttctgtaagtttgtagtaacttgacaagtttaccaaattctgcatgtattgtttacttagcatcatttctaaccgatatggcatcctttagagatttgacaggaaatcaactcagtggatcgatcccgtctggtcttctcaagagaattcaagatggctctctaaatctaaggtaagtatacacatcaatatcttcttctaattaaagagaacttttacaacacttgagaaggtaccaagttgataacaaattttggtactgcccctgtctcataaaagacaaacttagttcgaaatatgacgcattatagtacaacgaatctggagttctggacagagatgtgccacatcatgtactaggtttattttgtatgggacggagggagtacctcttaaggaccataacacctctattttcaagttgccaaaaccccaggtcaattttagaaaataaattatatttgactcagcatgtttatttcattgatagatatggaaataatccaaacctctgcactaatggcgattcatgccagccagcaaaaaagaagagcaagctagctatctacatagttattccaatagttatagttctggttgtggtgataatatcagtggcagtactactttgttgcctgttgagacggaaaaagcaaggtgaggtttgttataaacacagtaattgtccatctacttgttcatccttttaacactagtgatgcttattcacatattttagcagcaatgagcaattctgtgaagccacaaaatgagacagtgagcaatgtgtcgtcaaatggcggatacgggcatagttcatcactacgacttgagaatcgtcgatttacgtacaatgaacttgagaagataacgaacaacttccagcgggtgcttggccgtggagggtttgggtacgtttacgacggcttcttggaggatggcactcaagtggcagtgaaattgcggtctgaatcttccaatcaaggtgctaaggagttcctcgcggaggtaaaatttcttcagctgcagttgatattttgctttgcctatacttataccaagttgttgctagtgggatataattggttaatttcacttgttaggctcaaattttaacccggattcatcacaagaatcttgtctctatgattggttactgtaaggatggggaatacatggcacttgtatatgagtatatgtcagaaggaacactacaagaacacattgcaggtatgcataggatgtttatgatcaacttgtaggatacattgtaatacttcatctaacgtatcatttcacatgactctcatgatcttcaattctcattctatacctatttgtaggtaaaaacaacaacaGgatatatttaacctggagagagaggcttcgaatagcactagaatctgcacaaggtaactacttgaattctagtaaagtgtttggaggtatgcttttttacacttttccctagaagttgatcatcactagtttaattatttggataactgataatggttagggctagaatacctacacaaggcgtgcaacccaccgcttattcatagggatgtgaaggcgaccaacatcctattgaacacaaggcttgaggcgaagattgctgactttggcctatccaagacattcaatcacgttaatgacacccatgtatctacgaacacgcttgttggcacacctggatatgtggatccagagtatgtaaatctcatctatatttctcgaaaccgttgttcagtgttttctattacaaatgttaagtgaagctcgtggaactggatgaacatgtaggtaccaagcaacaatgcaaccaaccaccaagagcgatgtctatagctttggtgttgtcttattggagttgatcacagggaagccgtctattctacgtgaaccagggccctttagcatcatccagtgggcacgacaacgtttggcacgaggtaacatcgaaggtgtggtggatgcacacatgcatggtgaccatgatgtgaatggtgtgtggaaggccgcagacattgcccttaaatgcaccgcacagacatcgacacaacgacccactatgaccgaggtggtggctcagctgcaggagtgcctagagctcgaggataggcgatgtggcatggaagatacatataacaacttctatgccggcaacaacaatgatcccaactcaagttataacatgtacaacacggaccagtccactgaagtgagtcaaaacaacacgatggagcataattttgaaagagtgccaaccatggctacggggccagttgcacgataaaggcctttgccaatctgatccgagactgctagtcctaaaatagatacatgcagaactgaaacaatattgttgctttaatttaccaaagtaaatgcaagcgcataaagtttcaaacaatcaagatctagagcttttaccgtgtggaatttgtaatcaatacacttatctattctttgatatttataactcttccatactattcttcaagaagagaaaagtcaatatacacctaataatttttttatcttggaatatagttatcaagaatttagaatccaaattttatgatttcccacaataaatgtactttgcttgataatgtaagatgagatatcaaatggaatccatgtcacttagtggactagcaagcaatggaaatcatgtaacatgaacaagggtcacatccattgtatt
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| CDS seq | atggagcgttcaacgccgggaacaatggcggcacggtcgtggttgcttctcctctgcttcgtcgccgtcgccaccgccggagtgctccaagctcgtgcccaacctgacagcaacggtttcatcagcgtagactgtggcctcccggggaagacgggcttcgtggacgacaagaccatgatatcctacgcggcggacgacggcttcaccgacggcggcgcgtgccacaacatctcggcggagtacatcacgccggggctcgccaagcgctaccacaccctgcgcagcttcccggacggcaagcgcaactgctacacgctccggtcactcgtcgccgggctcaagtaccttttccgcgccaccttcttttacggcaactacgacggcctcaacaagctacccgtgtttgatctctacgtcggcgtcaactactggacgatggtgaacatcacgggccccggcgacgcggtgatcgtggaggccatcgtcgtcgtgccggatgacttcgtgcaggtctgcctggtgaacaccggcgccgggacgccgttcatctccgggttggacctgaggcctctcaagaacacgctctacccgcagtcgaacgccacgcagggccttgtcctcctcggccggctcaacttcggcccgaccgattacaccgacgtcataaggtacccggatgatccgcacgacaggatatggttcccgtgggtggactcgaccaaatggagccagatatcatcgacgaagaaagtgcaggatctagacaacgacatgtacgagacgccgacggcggtgatgcagacggcgatcacgccgcggaacgcctccaggaacatcgagttctcctgggaccccgtgccgctgcccaacgacccgacgcccgggtacatcgccatcttccacttctccgagctgcagctcctccccggcaacgccgtgcgcgagttctacatcaacctcaacggcaagccgtggtccctgaccgccttcaagccggagtacctctacaacgacgccaccttcaaccggaacccattcctacggtacccgcagtacaacatctccatcaacgccaccgccaactcgacgctgccgccgctcatcaacgccgtcgaggtgttctccgtcatccccactgccaccattggcactgacccagaggacgtggctgcaatcacggcgatcaaggagaagtatcaggtggtgaagaactggatgggtgacccatgtgttccgaagatgcttgcgtgggacaagttgacctgcagctatgccatttctaaccctgcaagaatcattggcctaaacctgtcctccagtggtttgagcggtgaggtatcgtcctatttcgggaatcttaaggctattcaaaacttggatttgtcaaataataaattgacaggtccaattccagacgccctttcacagttaccttcattgacatttctagatttgacaggaaatcaactcagtggatcgatcccgtctggtcttctcaagagaattcaagatggctctctaaatctaagatatggaaataatccaaacctctgcactaatggcgattcatgccagccagcaaaaaagaagagcaagctagctatctacatagttattccaatagttatagttctggttgtggtgataatatcagtggcagtactactttgttgcctgttgagacggaaaaagcaagcaatgagcaattctgtgaagccacaaaatgagacagtgagcaatgtgtcgtcaaatggcggatacgggcatagttcatcactacgacttgagaatcgtcgatttacgtacaatgaacttgagaagataacgaacaacttccagcgggtgcttggccgtggagggtttgggtacgtttacgacggcttcttggaggatggcactcaagtggcagtgaaattgcggtctgaatcttccaatcaaggtgctaaggagttcctcgcggaggctcaaattttaacccggattcatcacaagaatcttgtctctatgattggttactgtaaggatggggaatacatggcacttgtatatgagtatatgtcagaaggaacactacaagaacacattgcaggtaaaaacaacaacaGgatatatttaacctggagagagaggcttcgaatagcactagaatctgcacaagaatacctacacaaggcgtgcaacccaccgcttattcatagggatgtgaaggcgaccaacatcctattgaacacaaggcttgaggcgaagattgctgactttggcctatccaagacattcaatcacgttaatgacacccatgtatctacgaacacgcttgttggcacacctggatatgtggatccagagtatgccgcagacattgcccttaaatgcaccgcacagacatcgacacaacgacccactatgaccgaggtggtggctcagctgcaggagtgcctagagctcgaggataggcgatgtggcatggaagatacatataacaacttctatgccggcaacaacaatgatcccaactcaagttataacatgtacaacacggaccagtccactgaagtgagtcaaaacaacacgatggagcataattttgaaagagtgccaaccatggctacggggccagttgcacgataa
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| Protein seq | MERSTPGTMAARSWLLLLCFVAVATAGVLQARAQPDSNGFISVDCGLPGKTGFVDDKTMISYAADDGFTDGGACHNISAEYITPGLAKRYHTLRSFPDGKRNCYTLRSLVAGLKYLFRATFFYGNYDGLNKLPVFDLYVGVNYWTMVNITGPGDAVIVEAIVVVPDDFVQVCLVNTGAGTPFISGLDLRPLKNTLYPQSNATQGLVLLGRLNFGPTDYTDVIRYPDDPHDRIWFPWVDSTKWSQISSTKKVQDLDNDMYETPTAVMQTAITPRNASRNIEFSWDPVPLPNDPTPGYIAIFHFSELQLLPGNAVREFYINLNGKPWSLTAFKPEYLYNDATFNRNPFLRYPQYNISINATANSTLPPLINAVEVFSVIPTATIGTDPEDVAAITAIKEKYQVVKNWMGDPCVPKMLAWDKLTCSYAISNPARIIGLNLSSSGLSGEVSSYFGNLKAIQNLDLSNNKLTGPIPDALSQLPSLTFLDLTGNQLSGSIPSGLLKRIQDGSLNLRYGNNPNLCTNGDSCQPAKKKSKLAIYIVIPIVIVLVVVIISVAVLLCCLLRRKKQAMSNSVKPQNETVSNVSSNGGYGHSSSLRLENRRFTYNELEKITNNFQRVLGRGGFGYVYDGFLEDGTQVAVKLRSESSNQGAKEFLAEAQILTRIHHKNLVSMIGYCKDGEYMALVYEYMSEGTLQEHIAGKNNNRIYLTWRERLRIALESAQEYLHKACNPPLIHRDVKATNILLNTRLEAKIADFGLSKTFNHVNDTHVSTNTLVGTPGYVDPEYAADIALKCTAQTSTQRPTMTEVVAQLQECLELEDRRCGMEDTYNNFYAGNNNDPNSSYNMYNTDQSTEVSQNNTMEHNFERVPTMATGPVAR |
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| Function | Putative leucine-rich repeat receptor-like protein kinase At2g19210 [UniProtKB/Swiss-Prot:O65924] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0023870 | OsLima_05g0023870.01 | Chr05 | 27209931 | 27214667 | + | NAM | ||
| CDS seq | atggagcgttcaacgccgggaacaatggcggcacggtcgtggttgcttctcctctgcttcgtcgccgtcgccaccgccggagtgctccaagctcgtgcccaacctgacagcaacggtttcatcagcgtagactgtggcctcccggggaagacgggcttcgtggacgacaagaccatgatatcctacgcggcggacgacggcttcaccgacggcggcgcgtgccacaacatctcggcggagtacatcacgccggggctcgccaagcgctaccacaccctgcgcagcttcccggacggcaagcgcaactgctacacgctccggtcactcgtcgccgggctcaagtaccttttccgcgccaccttcttttacggcaactacgacggcctcaacaagctacccgtgtttgatctctacgtcggcgtcaactactggacgatggtgaacatcacgggccccggcgacgcggtgatcgtggaggccatcgtcgtcgtgccggatgacttcgtgcaggtctgcctggtgaacaccggcgccgggacgccgttcatctccgggttggacctgaggcctctcaagaacacgctctacccgcagtcgaacgccacgcagggccttgtcctcctcggccggctcaacttcggcccgaccgattacaccgacgtcataaggtacccggatgatccgcacgacaggatatggttcccgtgggtggactcgaccaaatggagccagatatcatcgacgaagaaagtgcaggatctagacaacgacatgtacgagacgccgacggcggtgatgcagacggcgatcacgccgcggaacgcctccaggaacatcgagttctcctgggaccccgtgccgctgcccaacgacccgacgcccgggtacatcgccatcttccacttctccgagctgcagctcctccccggcaacgccgtgcgcgagttctacatcaacctcaacggcaagccgtggtccctgaccgccttcaagccggagtacctctacaacgacgccaccttcaaccggaacccattcctacggtacccgcagtacaacatctccatcaacgccaccgccaactcgacgctgccgccgctcatcaacgccgtcgaggtgttctccgtcatccccactgccaccattggcactgacccagaggacgtggctgcaatcacggcgatcaaggagaagtatcaggtggtgaagaactggatgggtgacccatgtgttccgaagatgcttgcgtgggacaagttgacctgcagctatgccatttctaaccctgcaagaatcattggcctaaacctgtcctccagtggtttgagcggtgaggtatcgtcctatttcgggaatcttaaggctattcaaaacttggatttgtcaaataataaattgacaggtccaattccagacgccctttcacagttaccttcattgacatttctagatttgacaggaaatcaactcagtggatcgatcccgtctggtcttctcaagagaattcaagatggctctctaaatctaagatatggaaataatccaaacctctgcactaatggcgattcatgccagccagcaaaaaagaagagcaagctagctatctacatagttattccaatagttatagttctggttgtggtgataatatcagtggcagtactactttgttgcctgttgagacggaaaaagcaagcaatgagcaattctgtgaagccacaaaatgagacagtgagcaatgtgtcgtcaaatggcggatacgggcatagttcatcactacgacttgagaatcgtcgatttacgtacaatgaacttgagaagataacgaacaacttccagcgggtgcttggccgtggagggtttgggtacgtttacgacggcttcttggaggatggcactcaagtggcagtgaaattgcggtctgaatcttccaatcaaggtgctaaggagttcctcgcggaggctcaaattttaacccggattcatcacaagaatcttgtctctatgattggttactgtaaggatggggaatacatggcacttgtatatgagtatatgtcagaaggaacactacaagaacacattgcaggtaaaaacaacaacaGgatatatttaacctggagagagaggcttcgaatagcactagaatctgcacaagaatacctacacaaggcgtgcaacccaccgcttattcatagggatgtgaaggcgaccaacatcctattgaacacaaggcttgaggcgaagattgctgactttggcctatccaagacattcaatcacgttaatgacacccatgtatctacgaacacgcttgttggcacacctggatatgtggatccagagtatgccgcagacattgcccttaaatgcaccgcacagacatcgacacaacgacccactatgaccgaggtggtggctcagctgcaggagtgcctagagctcgaggataggcgatgtggcatggaagatacatataacaacttctatgccggcaacaacaatgatcccaactcaagttataacatgtacaacacggaccagtccactgaagtgagtcaaaacaacacgatggagcataattttgaaagagtgccaaccatggctacggggccagttgcacgataa
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| Protein seq | MERSTPGTMAARSWLLLLCFVAVATAGVLQARAQPDSNGFISVDCGLPGKTGFVDDKTMISYAADDGFTDGGACHNISAEYITPGLAKRYHTLRSFPDGKRNCYTLRSLVAGLKYLFRATFFYGNYDGLNKLPVFDLYVGVNYWTMVNITGPGDAVIVEAIVVVPDDFVQVCLVNTGAGTPFISGLDLRPLKNTLYPQSNATQGLVLLGRLNFGPTDYTDVIRYPDDPHDRIWFPWVDSTKWSQISSTKKVQDLDNDMYETPTAVMQTAITPRNASRNIEFSWDPVPLPNDPTPGYIAIFHFSELQLLPGNAVREFYINLNGKPWSLTAFKPEYLYNDATFNRNPFLRYPQYNISINATANSTLPPLINAVEVFSVIPTATIGTDPEDVAAITAIKEKYQVVKNWMGDPCVPKMLAWDKLTCSYAISNPARIIGLNLSSSGLSGEVSSYFGNLKAIQNLDLSNNKLTGPIPDALSQLPSLTFLDLTGNQLSGSIPSGLLKRIQDGSLNLRYGNNPNLCTNGDSCQPAKKKSKLAIYIVIPIVIVLVVVIISVAVLLCCLLRRKKQAMSNSVKPQNETVSNVSSNGGYGHSSSLRLENRRFTYNELEKITNNFQRVLGRGGFGYVYDGFLEDGTQVAVKLRSESSNQGAKEFLAEAQILTRIHHKNLVSMIGYCKDGEYMALVYEYMSEGTLQEHIAGKNNNRIYLTWRERLRIALESAQEYLHKACNPPLIHRDVKATNILLNTRLEAKIADFGLSKTFNHVNDTHVSTNTLVGTPGYVDPEYAADIALKCTAQTSTQRPTMTEVVAQLQECLELEDRRCGMEDTYNNFYAGNNNDPNSSYNMYNTDQSTEVSQNNTMEHNFERVPTMATGPVAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0524500 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g44930 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0524500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0024230 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024120 | SBH | 0.0 | 3.785832 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0024100 | SBH | 0.0 | 5.074499 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024060 | SBH | 0.0 | 1.170324 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024150 | SBH | 0.0 | 17.616816 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0404100 | SBH | 0.0051835 | 0.301636 | 0.0027315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023690 | RBH | 0.0 | 0.953630 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0416300 | RBH | 0.001579 | 0.095063 | 0.006649 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032600 | SBH | 0.064812 | 0.095376 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023770 | RBH | 0.038363 | 5.357371 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023960 | RBH | 0.0 | 2.033209 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023970 | RBH | 0.0 | 0.776257 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024010 | RBH | 0.0 | 5.189707 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G023410 | RBH | 0.0 | 5.734426 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023810 | RBH | 0.0 | 21.107746 | 0.0 |
