Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_05g0015450 | OGI:05050890 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr05:19765832-19769837 | ||||||||
| Gene Symbol | OsNADK3 | ||||||||||
| DNA seq | attgtcttaactagttggaaatgattgttggataattccattgctgccgtatttttttaatggcaaaaaattaccgtgcctcagattttgctaaagtgggaatcccctccacaaactgttcttttcgtgactaaacctaattccaactccgtgcacgctctctgtgctgaaatggttaggtatgttttctttctgctctgtctgccaacatggtcaggtatgtcaaaggttttatattttatcaatcatctgagttcggcattaaaaatagcttcttttttgtttctggaacttgtcctctcctaatttacttatgttaagcagattttgttgataaataatgttgcatggaattgtatatttttcattcaatatcgttgtttcacttgtgctaatgtctgccgttctccgcagatggcttaaagagcacaataatataaacatctttgtagagccacgagttagcaaggaactagtgactgaagattcatacttcaactttatccaaacatgggataatggtaattatttttgcctatattagaatcattagactttgtatcttggaacgtcagggtgtgaagaatatcttgtcacaacctagataacctgatatctgatttatttttttaaatatcaataatctggcactgaaataaatggttatggtcactgtttatgagaatgaaaagcagtatgctgtgataatttcataatttaaggactacattggttcatttaactcatggacaaccaatagacattcccctctacttttaagtaacctgctaaatttcttctcattggcccttgcaatgaagttcttctttcatacctaatgacccttgcaatgaagttttctttcatacctaatgacatgctgctgctggtggctgtgtgtttgttaatgtgataaattcattacagtggtctaatatctactacgagaaatgtatcctttcctttagcattatacattaagttggttaatgttaatttcctttaccgataaaatactaaaaacaaaacagtctagtgtctcaactctcaacagttgcttgagtttctattagtgcttgaatggatcgtctatcattaaatagctccttttctgttgatgagttctgtcaatagagttcccttgcgctgtctttctctgtggtttaaaatatccccattccataatatacttgttttgttaacctatgcccttagaaatatgcccctttgtttttggtgtccaACTTactggaaatctttgacagatgaggAaatgaagacattacacacgaaggTtgatctcattgtaactcttggaggtgatggaacagttttatgggtatgTggtccaaactacatgacaatttactgaatctgaatactgtgtggttaattttgaaatttaagctataaatatgagtttggaaatAactaacactctgatggtatacaaagagatgaaatgccatccaagaaatgctgatggtctaatgcattttgtcgatgcaaagttgaaactagtgtctcacctacttgtggatccaagtttaccacagttcattcactaggttaggaattgttaaaggtgttttttttgtgATatatatatgtcaaacaatttgtaacttttttaaaaagtttcctaacaatgtagttttctgataattccggaaagtctgtgcagtttcaagaaatttactcattttctGgggcctattagtataaCACCcaaaattggaaccagtagcatAtaaaatgctggaagctgattaattgtcagatatacgtacagatAaacaggctatatgtgtgcaaagtgatAGacctagaatatagattatggaatgcagttgattggttgaatagtGttatgcacaagaagtgtaccacactaataaatattgcttggctgaaagaagattagtagcTccacttcaaagttcaaattgacaacagggattgtgggtatctttctttttttgaacgtaatactttgccgcttttttGggatagttagcaaagtatagttCtgctgtcagtagcatcaagttcttggaaacgtcttttgagtaaacagatatttgaaatgtcctttctaagattaatgcatggacaaactttcgttgcagtgatcacatagacctagtacctagttattatggttgtttataacaaataatatcatgtttttcttctatgtgatatttaaataactgctgtccttgTtttgttgctctctatgtatcatatttatggcttgtctcttttgtaatgttcttgagctagacaatgcgttaattatctctcaacaggcagcatcattgttcaaaggaCcagttccccctgttgttgcgttctctCttggatcattgggattcatgaCccccttctgtatccttaatcgttggtgttggaatcttggtaatcatgttgctaaactatatggcagtttcgcatgttacttattatacccagtccacaaatgtgtgccatctgtcttttcacagtcgccactacaacacattggatatgacttctttgaaagaaaatattacactaaccaaaataatagaacttatgtattttgaaagtattttgcacgaaaaatccaatggcataactttatgcacttgattaatatactagacattagagatccaagtttgaaaagtgcccgagtgccacacttctctctctgtcaatgtggcataggatatgcatgacatatttgatcagtctgcaactggtcttagctgggtggccgtgtttggtatcaaatgttcaaaataattaaaactctcttgatagcaagatcatttacatatttcatgctggagcacattgtcgattaacaatatctttttgtccatggagccatgttgatgcccttgacttaagctaagcaagtgagctgtatcgtgagtgtttggaccatgtgctgaaaaggccatttggcatcacactaaggagtcgtctgcagtgtcatgtaatctacgattcagctaaaaatgaagttgatacggaggagccaattctagtgctgaatgaggttacaattgaccgtgggatgtcatcgtaccttacctacttagaatgctattgtgacagttcttttgtcacacgtgttcaaggagatgggttaataatatcaacaacatctggaagcacagcttattcattggcagctgggggatcgatggttcatccacaggtacatctccactctacactaggtctcttgtctttggaactaaaatatttcgtttttagttactccaaaggttttgaagtgaaattattcatgtcatgttctgtactatgtgtaaattgacctacttcctccaaccacaaagggactttgaacctctccatttgtccacaaatataagtgactttgagtactacttgcccccctctactgagggcaacatgcctgaacagatgaccaaaactgttgcaaagctcatcatatctgatgaaatgtagttaacatgaataaatatccagaattggcttaattttttgaaagaaaataagaaaggtgtattaatgtgcactttttgttacttcctggtcaatgatcttatcatattttcaaccccccccccctgaggtgtatttaagcaaggattagttcttccgattgtttctcatttaagttatctgtaattttgatgctacgttttgctaccatgctcaggtcccagggatccttttcacgccaatctgtccccattcattatcattcaggcctttgatactacctgaatatgtgacattgcgtgtgcaagtgccaatcaatagcagagggcaggcatgggcatccttcgacggcaagggcaggaagcagctagggccaggtgatgcactcatctgcagcatttctccatggcctgtgcccactgcctgcctggtggactcaacaactgacttcctgcgaagcatccatgagggcctccactggaacctgaggaagagccagtcgtttgatggccctgttgcatga
More
|
||||||||||
| CDS seq | atgttgcatggaattgtatatttttcattcaatatcgttgtttcacttgtgctaatgtctgccgttctccgcagatggcttaaagagcacaataatataaacatctttgtagagccacgagttagcaaggaactagtgactgaagattcatacttcaactttatccaaacatgggataatgatgaggAaatgaagacattacacacgaaggTtgatctcattgtaactcttggaggtgatggaacagttttatgggtcccagggatccttttcacgccaatctgtccccattcattatcattcaggcctttgatactacctgaatatgtgacattgcgtgtgcaagtgccaatcaatagcagagggcaggcatgggcatccttcgacggcaagggcaggaagcagctagggccaggtgatgcactcatctgcagcatttctccatggcctgtgcccactgcctgcctggtggactcaacaactgacttcctgcgaagcatccatgagggcctccactggaacctgaggaagagccagtcgtttgatggccctgttgcatga
More
|
||||||||||
| Protein seq | MLHGIVYFSFNIVVSLVLMSAVLRRWLKEHNNINIFVEPRVSKELVTEDSYFNFIQTWDNDEEMKTLHTKVDLIVTLGGDGTVLWVPGILFTPICPHSLSFRPLILPEYVTLRVQVPINSRGQAWASFDGKGRKQLGPGDALICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGPVA |
||||||||||
| Function | Putative NAD kinase 3 [UniProtKB/Swiss-Prot:Q60E60] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_05g0015450 | OsLima_05g0015450.01 | Chr05 | 19765832 | 19769837 | + | NAM | ||
| CDS seq | atgttgcatggaattgtatatttttcattcaatatcgttgtttcacttgtgctaatgtctgccgttctccgcagatggcttaaagagcacaataatataaacatctttgtagagccacgagttagcaaggaactagtgactgaagattcatacttcaactttatccaaacatgggataatgatgaggAaatgaagacattacacacgaaggTtgatctcattgtaactcttggaggtgatggaacagttttatgggtcccagggatccttttcacgccaatctgtccccattcattatcattcaggcctttgatactacctgaatatgtgacattgcgtgtgcaagtgccaatcaatagcagagggcaggcatgggcatccttcgacggcaagggcaggaagcagctagggccaggtgatgcactcatctgcagcatttctccatggcctgtgcccactgcctgcctggtggactcaacaactgacttcctgcgaagcatccatgagggcctccactggaacctgaggaagagccagtcgtttgatggccctgttgcatga
More
|
|||||||
| Protein seq | MLHGIVYFSFNIVVSLVLMSAVLRRWLKEHNNINIFVEPRVSKELVTEDSYFNFIQTWDNDEEMKTLHTKVDLIVTLGGDGTVLWVPGILFTPICPHSLSFRPLILPEYVTLRVQVPINSRGQAWASFDGKGRKQLGPGDALICSISPWPVPTACLVDSTTDFLRSIHEGLHWNLRKSQSFDGPVA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.426245 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g32210 | RBH | 2.310258 | 3.519169 | 0.759763 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0015600 | RBH | 0.748887 | 4.178707 | 6.712551 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0015600 | RBH | 0.324861 | 1.047339 | 2.843571 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0015430 | RBH | 0.861863 | 4.112751 | 6.999372 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0015450 | RBH | 0.144408 | 0.201073 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0015640 | RBH | 15.147030 | 5.148681 | 16.265917 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0288100 | RBH | 6.0703225 | 4.811532 | 6.1247995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0015200 | RBH | 0.696279 | 0.237521 | 3.020835 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0298800 | RBH | 9.90827 | 4.901887 | 16.9551835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0046550 | RBH | 0.486148 | 0.093786 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0015450 | RBH | 1.768865 | 4.678818 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0015480 | RBH | 17.738092 | 12.749970 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0015520 | RBH | 0.000000 | 0.000000 | 0.557990 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0015590 | RBH | 0.260150 | 3.142590 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G015090 | RBH | 0.961191 | 0.775101 | 2.464751 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0015400 | RBH | 3.542896 | 4.243744 | 11.457457 |
