Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0027530 | OGI:04094960 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:33717275-33725117 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaattgggaccccagcagctgaggtacatgaccgtcctcagcccctcctcggccttctccgctctcctcctctccgccaccgccgccgcagaagcaggcagcttcttgccctgcgagacgccggcggcgttggccttggctgctttgtggatggaccgcagcgcgtagttccagcggcagagtccgccctggtccttgagcgcctccacggcgcccacgctcatcgccaccatccacgacgccttcgctgcacccaccattgatcgagctctcttctttcttgctaagatcgaccggattgtcctgtggtttcttgctcctgaTttggtttgcagtagagttgttgcaatgctgagtagttgatgctgtgctggtgagaaagagggaactcgggttatatagaggagggtgtggagaggagaacgacgggttgggcgaaacaaggaggcgccgcgcgttggtttcccaggataccgggtgctttgctctgcttgattacgccggaattcgctttcgtccaggctcggtggcccgcatccacctcatctcgaggcgtctctgttggcggtatggaagctggttgtccgttgcgagggtccacatgagcagtgtaaccgatgaggatgcgtgtcacttgagatgccacgaagggctagtgtctgcatgggcctgagttttgtgtttagctcagcagtgtaaaccattcttcctccttcagctatagttattcaatcatttctttaattttttttctccctcattgtcatacacaggtaaaacttcttcagtttaaggaaacaaacgatgctttctgctccgcactgtctcgctttcaaagtttcagcaaaatctgccaaatctactacagtacctttttgtgattcccctgcatcctagagtctgtacttgcactaatgggaaagaaatttgtgcttttattcgtggtgaacgagtaaactaaggctgtgttggctcaggcgtgttcctaaccagcggtgcacacagaaaatggaacaatccattagcgcatgaataattaagtattagctaatttccttttcaaaaatggatcaatatgatttttttaaacaactttcgtatagaaactttttacaaaaaacacaccgtttaacgatttgaaaatcatgcgcgcgaaaaacgagggagatgagttgggaaacctaggtaaagaacatagcctaagaccattcacagggcgacaaggcattttgccggacttcgtatgccatatagacccacaccaaaacacaattttagccacaggtttccacggtgctatatagtctcaagtagagtctacataaataaaaaaagtttctcagtttacttttccccatactctCcccatcaactgacgctttctttccccctctctcccctcaacacgaagccagcggagctcggggtcgaggagacaaccgtagtcggcgcagatcggaggacgacgatgggctccgcagcggcgggccaagcggcgacggcgacggccgtgggcggggagccaccgcagccgcgcgcccgcgccccacctcttcatccgccgcgggcgggaagccgctgccgccgccatgcccccctttccgccggcgcccctatgggctttcacaaccggcgtggaacgggatgtcatcgaactcgttggtgtggatctggtggtggacgacctcaagctcctctccggcagcttctcaccccaccgtcgtcgcggctcttcctccccctagttggcgccgctctctccttcactgatagcacgacgtcagtGggagcttggacgcggcgcggatgcggtttctccggcgagcttctctgcccccctctctccggctttctcgccacgGAgcgatgcatgtgattcgtttttctctgacaaaagttgttacgctctaacgtggctctcggaactaaagaagaatgcgcgaacccggtgtagtcacgggccccacctccatttctcctccacacatgcattttgctaacgtggataaagattaccacacgccaactagcatttcttctcacgcaccaactcgcatcacacgagcacaccattttatgcgggtgacgaggccggagttgtgggaggctagtactacctccgtcccaaaataagtgcagttttgcactatttacgttcaatgtttgaccgtccgtcttatttgaaaaatttgtgAaaaaattaaaaacatttagtcacacataaagtactattcatgttttatcatctaatagcaataaaaatactaatcataaaaaattttcaaataagacggacggtcaaacgttgaacataaatagtgcaaaactgcacttattttaggacggaggtagtactagcttgggccgaaacccgaggctcggagcacatggtttccaacatatcaggtgctgaacagcatacttctcgttccatgtctacggatgcactgtaatctaggcatacaatacagacccctttccgcacgaatctgatccaatatctcctgaataggtctcgtttagaccgagtttagttccaaacTttttttttcaaacttttaatttttccatcacatcaaaacttttttacacacacaaactttcaatttttccattacatcgtttcaatttcaaccaaactttcaattttagcataaactaaacacactagtacacaaactgtgaaagaaactacaactttactccctccattttaaaacataagagaaactataagagaatttatttggatttcagatttactaatactatgatatatccaattctaccAaaaactCatattttgataaGgggagtaaaccgaaatctcttttattttgatgaggggaaatacatcgttttaaattggtcaagaaacagggcatcaggattggatgattcattgatgtgttgtaaagaaggaaataagaaagagtcagtttttgcgctcttttcggtctcggtggttctagagtccatcctttcggatgaccggctgtggtcgttagcggacgttgcttcctttggggacttgttaggagtacagcgtggttctgcctcccttccgctgtttggagtagtgtaacccgtcgtacgagtttttctttttcttccttgtttttttttgtctctgttttcttctttccttgctatagaccggtttgactgattgcgtaacaagaactctatctatctatctatatattatatactaaaagtccattaaacttcctaaaaacgctcgcatgccgccacatggcgctctaaaaacgctatcaagctgtcacatgacgctctaataaaatagagaaaatcttagaaattctgagaaaaagaaaaaaactagccctcgattttcatttaagttggtggacccattagtttacaccgttagattagatccattataaatagtaatctatctctcctaaTttaccatgtaatacttacctaaatataatggccggaataagccaagaaggcatatacgtacgtacgagttaaatagaaaaagcatactgcatgtatacgtactaggtactactggaacttcctctgtattttttaaaaaacattgccaacgttaaatatttagtgaaactaccgaaagaaaacaacgattttaaactagatttttctattatacttcctctggatttttttattttctttatgatgatcaacgtcaaatatttaatgaaggtggtagcataagAaaaatatattacttcataaaacatacacaccccaaaatagatctataatataatataaaatatcaaataaacatatcatttcacaccacagttgttgagtatagatagattttatttgcatcagtgggtctacattgatagttcaagatgaaacaatgagtaattaaaatattacttGggacatattgtcagaaactcaaataaaaaatgtattgtttaaaaatatgttgcattttttctcgcaaaacatagttagccgttaatgactcaattaatatacgcttttgatttgtacatatttagtaataaatttaaggttgagttctaaagtgtttatcagattggctctccctcattTAtcttgagcatgttcttcgaactattaaactgtgtgtgttttgcaaatattttctataatttttttaaaactatctattttaatgtttgtaatatttaatacttaattaatattgcgttgatgacctacattgttttccgtgcccggcataagctcaaccaatgagatagaatgtagtttaagtaggagataaattagattatttactatataatttaaaattaaataatcaagttaactacattattaaaaaatttcattactttggatcatatatatttaagaaaaaagcaaataagttttgttgtctccttgctatttcttagctattaactaaAATaaaaacaatagacaatattggatttttttttgaaacaccgcccgcgcacaccctacccttttgagtacctccaaaagactaagccagcacattttgagactgacgatgtcaccacgggcgtctcgctgtcgacgggtatgtcacctaccactgaaagaataattagtcgtaactgcgaacacccatgtcaagtctaggacttgaacatgggcatgtttcaccaaaagaaacctaaccaattaattgagccgcgctcacttcgcaataacgttggatattaaaataaccataattttttagctacattactggaatacttatatgccttttagaccGgtgaactattagttataaccgttagatctatcttatataaaagttaagcatgcattcatggtacatgatatttccaaaatattattgtgcaattatatttcgttattatcgtatccatattaggttgcatggagcctctcacccaccctacttgaaatgttcatagatggatcacctctcaaattacatcaatcgtattagcttatataaacccatacatttaatggagcttcatgtcccacccaattcatcccttaatgaactattataatagatatccatttactttcgctgacatgttttctAaaaaaagtctactttatttttaaatgataaagaagattataaataattgcttatagAtattatttaaatatgatattacTAAtaggttagaaacttattaagcaattaatgctgatgaaaacaatttaatatctcacggcagatgttctccgtttaataTTtcgctcttatatttatctcaaacatagcgtacgatgcatgcccgcgcaaatgcgcgggctacctagttattctaatatattgatgtgcaatcttcatgttcgcgaaaaaaaaggaaacaagaaagaattatccacataggattgaaattaaattgatggcaccactgccaagttgatcatgatCccatcggcaattcaaacgtactagaagaaattgtagctatccagtagaagtagaagtatgagtactacgccatgtccaggagtactagtgctttgtagcactatgccatgtccaattatgtttatttgttataatcaaggggcagggttcgtacggtcgtctcgtttttgtcatgataagtagttcttccccttcaaaaaccaaatcacgtactgcatcctacaggaaatgcttgccaagatctcaaaagcattttgaacccatgaggcatcgagacaccagtatactcaagtaacagaagttttcatcatcatcttcgtggtatatacaatcaggaggaattcaacaagcaaccggcaagtctcagccatgcttgccccttccaaacccgactctatcctactactattagctagctatagtagacagagcgatactaattggtgctccagcagctgatgtacatgaccgtcctcaacccctcctcggccttctccgctctcctcctctccgctaccgccgccgcggaggcaggcagcttcttgccctgcgagacgccggcggcgttggccttggccgccttgtggatggaccgcagcgcgtagttccagcggcagagtccgccctggtccttgagcgcctccactgcgcccacgctcatcgccaccatccaagacgccttcgctgcacccgccattggatcgatctcttctttcttgctgagaattggaccggattgtttgtgatttcttcttttggtttgcagtgaactattgtatgctgtgttgaggatgaggaGGAAGgagaggggcgggttatatagaggaggagggcaggaggctgtggagaggagaaggacggggttggggcgaaacaggaggcgCcgcgcgttggtttcccagtataccgggtgctctgctctgcttgattaggccggaattcgcattcgtccaggttcggtggcccgagttgtctctgttcgcggtatgggagatggttgtccgttgcgaggagcccacatgggcaggagtaaccgataaggacgcgtgtcgctgcagatgccacgcagggccagtacctgtatgggcctgaattttggggtttatgaaagcttagcacgatcagactgtaagctattttttctctctcagcaacaggtaaaacttcttcagagtaaggaagcaaagcaattctttctgtactgtactcctacctatctcgctctcaaagtttcagcaaaatctgccaaatctactataatatgattctggatcctgtacttgcattctttggtgagcgagtaaacaagtgagcatttcttttcacgcaccaactcgcatcgcccgacgacgttttcttcgggtgatggtgacagcgtagttgtgggaggctgctggacaggggaaaccagaggctggagcacatggttttccaagatgtcaggggcttaataattgcataatacttctcgttccagcttaatttattgatgcattgcattctgggtatgcaatagacagaagacacctgtgcttttccgcaccagtctgatgactctgatccaattcctccgactcaatatcgtttagcacaaactGggaaagaaactgtattgtgattttgctacatcagtttaatttggtaaaaaaaagaacggcagaaattaggattggttgagtggtataacgaaggaaacaagaaggaattattcagataggagtattcataggactggataaattgatggcgccactgcctgattttcgtgcgtggtaatgtattgacaacctgatgactgatctctgatcatgatctcatcagcaattcaactttcaacgtggatgtttattgttgtaatcaaagtgcagggttcatactgtcgtatcatttttgtcaagataaatactagtggttcttccccgtcaaaatccaaatcatgtacaaccatgaaaaatgcctgtcaaaatctctcaaggcaaaagcattgataacccatgagacatcgagacatcaagtatactcaagtaacagaagttttcatcatcatcatcgtggtatatacaacccggaggaaattaacaagcaaccggcaagtctcagccatggttgccacttccaagttccaacctgactcctatagcaaagctagtagtagaagagtagaaggcacagctatactaattggtactccagcagctgatgtacatgaccgtcctcaacccttcctcggccttctccgctctcctcctctccgccaccgccgccgcggaggcaggcagcttcttgccccgcgagacgccggcgcgcgcgttggccttggcggcgcggtggatggaccgcagcgcgtagttccagcggcagagccccgcctggtccttgagcgcctccacCGcgcccacgctcatcgccaccatccacgacgccttcgctgcacccgccat
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| CDS seq | atggtgggtgcagcgaaggcgtcgtggatggtggcgatgagcgtgggcgccgtggaggcgctcaaggaccagggcggactctgccgctggaactacgcgctgcggtccatccacaaagcagccaaggccaacgccgccggcgtctcgcagggcaagaagctgcctgcttctgcggcggcggtggcggagaggaggagagcggagaaggccgaggaggggctgaggacggtcatgtacctcagctgctggggtcccaattag |
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| Protein seq | MVGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPASAAAVAERRRAEKAEEGLRTVMYLSCWGPN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0027530 | OsLima_04g0027530.01 | Chr04 | 33717275 | 33725117 | - | NAM | ||
| CDS seq | atggtgggtgcagcgaaggcgtcgtggatggtggcgatgagcgtgggcgccgtggaggcgctcaaggaccagggcggactctgccgctggaactacgcgctgcggtccatccacaaagcagccaaggccaacgccgccggcgtctcgcagggcaagaagctgcctgcttctgcggcggcggtggcggagaggaggagagcggagaaggccgaggaggggctgaggacggtcatgtacctcagctgctggggtcccaattag
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| Protein seq | MVGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPASAAAVAERRRAEKAEEGLRTVMYLSCWGPN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0027530 | OsLima_04g0027530.02 | Chr04 | 33722962 | 33723463 | - | IsoSeq | ||
| CDS seq | acacagcatacaatagttcactgcaaaccaaaagaagaaatcacaaacaatccggtccaattctcagcaagaaagaagagatcgatccaatggcgggtgcagcgaaggcgtcttggatggtgg |
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| Protein seq | TQHTIVHCKPKEEITNNPVQFSARKKRSIQWRVQRRRLGWW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.360662 | 3.374799 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0635100 | RBH | 0.0 | 0.0 | 6.954032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g54280 | SBH | 0.058236 | 0.000000 | 0.041119 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0635100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027980 | SBH | 0.0 | 15.968359 | 11.539487 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028740 | SBH | 0.000000 | 36.616982 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028350 | RBH | 0.0 | 26.488686 | 4.208355 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0028170 | RBH | 0.047842 | 0.592380 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028430 | RBH | 13.306769 | 126.230377 | 99.229439 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0509700 | RBH | 3.463001 | 1.816037 | 11.8711545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0027100 | SBH | 0.056421 | 0.319640 | 1.339238 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0513700 | SBH | 4.0608985 | 0.21937 | 3.080043 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0005040 | SBH | 0.0 | 0.422640 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027340 | SBH | 0.0 | 26.870203 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027420 | RBH | 0.0 | 144.354019 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0028020 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0028010 | RBH | 0.0 | 4.475205 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027390 | SBH | 0.564117 | 3.325069 | 9.932290 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027260 | SBH | 0.0 | 1.491151 | 32.491432 |
