Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0028020 | OGI:04094960 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:34579992-34584613 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagttgtttgggccccagttgctgaggtacatgaccgtcctcagctcctcctcttgctgctgggctttcctcctcgccgccgccgccgctgcaggctgcagcgcacgcgcgccgccgccgctcttggcgccgctcgtcccggccacggcctgctgcctgccgcgctgctggagcgtccggaacgcgtagttccagcggcacagtccggcctggtccttgagcgcctccaccgtgcccacgctcatcgccgccgcccacgacgacgccttcgccttccctccgccgctcgccatgtgtttgttgcacttgtacgaacgatctgtacgtgtgtttgtgtgagctctgcacgctcagatgatgctcttgtttgtgtttgggtgtgtgttgccttctgccggaatggtggtggcgcggagccgtggttttataggggagagaccaagctcgcgcgacccgattagtgatcgctagagcgcgagccgtcgctgccggtggcgtggcgtggcgtgggcgtacgcgcggttttggactcgtgcgggtgaatcggtGgggggctcccagaaaaccgggtgcagaattgcgtggctctggttggccgcgctcttgctcgcgcgcggaacgaggtttgcaaattgcggcgcgtacggtgtgcttcttgtggttgtggttgtgggcgtccgtgtgctatagcctatagctagctggccacttgccgtgacgtttgccatcgtctcgtctccggccgcctgccgtgcccggttgaaattctggtgccgaacgagaccagggcgtgtgccgccgttattatgtactggactatggtacggactaaggagtccaaatactcggtttttgtttaagaaagtggaataatacccgtcatttagaaagttggtattctacaatggagttcttccattggctagcagggaagtagatgcgcaggtgcaatgtataattgtgtagaggtgaactgttttcgttttttctgggggtgatccacatgtctgcaagtcaaaaagtagactagattttgtgttgtttgatcttttctggtctaaagagtttaatttgcgttatgtactgcttcatgtcagtaagtggtttattgtatctccaatggttttgacaaaagcacatgtgttgcgaccaaagcaggtctaatacagcatatacactgcacagggaacttctcttatttcaaataactgccgactcttgtttcattctctctagtcactattatctcaaatctctatgcaggtacactataattttaaagaagtaagtaagtaccgctgtctcccttgcagcacacaggatgataaggatctgccatatactactaatctaatccgttcaaagcaatactactaatcttttcatcaaaaaaaataatactactaatctgaggcctgaggcatcttgtgatcttcttaccttcttggtgagcaataaactatatggatgatggatcgtttctttgccggcactgactcacatcacatgcgttaggtgcagattattgttactagtaacaaattagtaccacatgttctttccggtgacggtgaacgcggagttatgggaggcgggcagggggaatccaggggctggacagcatggtttccagtataccaggtgctgcattctgctgcacccagcgttttgctgacgatgctgaccgcatgcgtgctaagatgcagacaaacacaccactagaagccacctgcctggtgcttaattacttcaaactagcatggtggcctccaaaagcatcattatattttctctcatataatagcatatatgttttcttaatatattattcaaatatattaaaatgacaacataattttaaattttataataactttacaaaactactaatgtgtaatattcatattgtattttatatacgtgttagttattaattatttttaatatcaaattttagttatttgaaaattatatatattcctatatggactctagactcatcttttaatatttctttttttaaattccgaactttttgtaaattgtatttatatatatactctatgctcttcttcctatattatttatttttatttctgaatttttattatttctaattgtatttctatgtggactctaaactcatctttcaatattctttaatttttaatttcgaatttcagttacttctaaattgtattcctatattgactttaaactcttcttcacatgtttttcttaatctcgaattttagttatttgtaaatTAtatttttatatggactctaaactctacttttaattttattatgtttattccaaattttaattagttttaaattcctatatggactctatactctacttctaatattccttatttgtttaattccgaatttctattttttttcttaattgtatttatatatgtactctatactctacttctaatattccttatttttaattccgaatttctattattttctaattgtatttctatatgaactctatactctacttctaatattccttatttttaattctgaatttcagttatttcctaattgtatttctatatagactctagtctcctcttttgatattccctattttttaatttcgaatttcagctatttctcaattatatttctatatggactctagtctccttttctaatattccttattttttaattccgaatttcaactatttctaaattgtatttctatatggactctagtctccttttctaatatccattatttttcaattccgaatttcaactatttctaaattgtatttctatatggactctgccttttctttttctccgattaatgtgagaatttttagaccataagagcgaacgtggaggctcctttttctattcttttaataatataatagataactttaggcctcttttggctttagagtttagaacagataaatgttataggattcatatctttttatagcgttatttggaacaaatgattggacatacaccttatcattaagaacccccgatgaattgagccgataaattttaagattaacgaaatcatcacaaacatctgaatgtcaagtgctatatcacctgctccctccgtctcaaaatataacaatttttagctatcaggatttatcctaacatataacaacttctccatcaatactctctttccaaccaatcataaccatccaccattcactttttccgtctaacttcactactcattcagtcacaatcctccaccattcccttcaacctaccctctctgtcccaaaaaaacgaatttagaactggatgtgacacatcatagtactataaaatctggacatacatttgtccagattcgttgtattagaatatgtcacatccagtactatgtttcatgagacggagagagtacttttttaataaccatgtctaactctaaaacttcttatattctgggagagtaacactaaaataattagccataaatgtaagtattagaggaagtttaacatacggtccaatcttatcagaacatttatgtgaacttttttcacgttaaatcaaacggttatttctctaattttttttcttcttcttgttttacaatcatatgtttcgttattgcatttatcgatttttgttatatctatgttttctcgttcgtgcattccacaatacttatatatattgcatgccgtaagctagagacaatggtcatacacatttttactatattcggatggagatttacaaataaacttgaataaatgcttctatattttatgttggtattattagttagggacaattagttattgtttagatctttaatgttttttatgctctccattcagtgaattatgtagagcggctgtagctcttttaagcaaaggttgagaatctttccattctcttAaaaaaattccataccaaattgaattgaattacagatctgactatcattcagtaacaagtggtaagtattaagtacaaactagattgctaccatttcttccatcatttcgatcataaattttacggtgcagtatcaaaagaacagaacacctttctcccagaaagtttggatcttaaattgatgacacggccggatttttgcgtgcatgaccgtaaaagtggtcagttcataaattgttctagacgacacaatcacaaaggcaaaatgacccatgaagcaattgtactcaagtagcagaatttttcatcatcatcgtgatatattacgatcagctgggagcaaccggccaattacgtctccggccatggctgctaccgtcaaacggacacccagcagagcagatcgagatccatccgagctaacactaatggcctagctaattgggaccccagcagctgaggtacatgactgtcctcaacccctcctcggccttctccgctctcctcctctccgccaccgccgccgcagaagctggcagcttcttgccctgcgagacgccggcggcgttggccttggccgccttgtggatggaccgcagcgcgtagttccagcggcagagtccgccctggtccttgagcgcctccacggcgcccacgctcatcgccaccatccacgacgccttcgctgcacccgccat
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| CDS seq | atggcgggtgcagcgaaggcgtcgtggatggtggcgatgagcgtgggcgccgtggaggcgctcaaggaccagggcggactctgccgctggaactacgcgctgcggtccatccacaaggcggccaaggccaacgccgccggcgtctcgcagggcaagaagctgccagcttctgcggcggcggtggcggagaggaggagagcggagaaggccgaggaggggttgaggacagtcatgtacctcagctgctgggggaaggcgaaggcgtcgtcgtgggcggcggcgatgagcgtgggcacggtggaggcgctcaaggaccaggccggactgtgccgctggaactacgcgttccggacgctccagcagcgcggcaggcagcaggccgtggccgggacgagcggcgccaagagcggcggcggcgcgcgtgcgctgcagcctgcagcggcggcggcggcgaggaggaaagcccagcagcaagaggaggagctgaggacggtcatgtacctcagcaactggggcccaaacaactaa
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| Protein seq | MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPASAAAVAERRRAEKAEEGLRTVMYLSCWGKAKASSWAAAMSVGTVEALKDQAGLCRWNYAFRTLQQRGRQQAVAGTSGAKSGGGARALQPAAAAAARRKAQQQEEELRTVMYLSNWGPNN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0028020 | OsLiXu_04g0028020.01 | Chr04 | 34579992 | 34584613 | - | NAM | ||
| CDS seq | atggcgggtgcagcgaaggcgtcgtggatggtggcgatgagcgtgggcgccgtggaggcgctcaaggaccagggcggactctgccgctggaactacgcgctgcggtccatccacaaggcggccaaggccaacgccgccggcgtctcgcagggcaagaagctgccagcttctgcggcggcggtggcggagaggaggagagcggagaaggccgaggaggggttgaggacagtcatgtacctcagctgctgggggaaggcgaaggcgtcgtcgtgggcggcggcgatgagcgtgggcacggtggaggcgctcaaggaccaggccggactgtgccgctggaactacgcgttccggacgctccagcagcgcggcaggcagcaggccgtggccgggacgagcggcgccaagagcggcggcggcgcgcgtgcgctgcagcctgcagcggcggcggcggcgaggaggaaagcccagcagcaagaggaggagctgaggacggtcatgtacctcagcaactggggcccaaacaactaa
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| Protein seq | MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPASAAAVAERRRAEKAEEGLRTVMYLSCWGKAKASSWAAAMSVGTVEALKDQAGLCRWNYAFRTLQQRGRQQAVAGTSGAKSGGGARALQPAAAAAARRKAQQQEEELRTVMYLSNWGPNN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0635000 | RBH | 0.0 | 0.0 | 2.146463 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g54230 | RBH | 0.0 | 0.0 | 0.532432 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0635000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0028000 | RBH | 0.304936 | 12.706012 | 53.403999 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028740 | SBH | 0.000000 | 36.616982 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028350 | RBH | 0.0 | 26.488686 | 4.208355 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0028170 | RBH | 0.047842 | 0.592380 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028430 | RBH | 13.306769 | 126.230377 | 99.229439 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0509600 | RBH | 2.611436 | 8.88021 | 11.472736 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0027090 | RBH | 0.0 | 0.0 | 0.026107 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0513600 | RBH | 3.910622 | 4.2323475 | 3.115535 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027510 | RBH | 0.0 | 0.637697 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027350 | SBH | 0.153478 | 152.103088 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027400 | RBH | 0.0 | 10.962244 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0005180 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0028000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027390 | SBH | 0.564117 | 3.325069 | 9.932290 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027260 | SBH | 0.0 | 1.491151 | 32.491432 |
