Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0028350 | OGI:04094960 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:32222772-32227501 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagttgtttgggccccagttgctgaggtacatgaccgtcctcagctcctcctcttgctgctgggctttcctcctcgccgccgccgccgctgcaggctgcagcgcacgcgcgccgccgccgctcttggcgccgctcgtcccggccacggcctgctgcctgccgcgctgctggagcgtccggaacgcgtagttccagcggcacagtccggcctggtccttgagcgcctccaccgtgcccacgctcatcgccgccgcccacgacgacgccttcgccttccctccgccgctcgccatgtgtttgttgcacttgtacgaacgatctgtacgtgtgtttgtgtgagctctgcacgctcagatgatgctcttgtttgtgtttgggtgtgtgttgccttctgccggaatggtggtgacgcggagccgtggttttataggggagagaccaagctcgcgcgacccgattagtgatcgctagagcgcgagccgtcgctgccggtggcgtggcgtggcgtggcgtgggcgtacgcgcggttttggactcgtgcgggtgaatcggtggggggctcccagaaaaccgggtgcagaattgcgtggctctggttggccgcgctcttgctcgcgcgcggaacgaggtttgcaaattgcggcgcgtacggtgtgcttcttgtggttgtggttgtgggcgtccgtgtgctatagcctatagctagctggccacttgccgtgacgtttgccatcgtctcgtctccggccgcctgccgtgcccggttgaaattctggtgccgaacgagaccagggcgtgtgccgccgttattatgtactggactatggtacggagtaaggagtccaaatactcggtttttgtttaagaaagtggaataatacccgtcatttagaaagttggtattctacaatggagttcttccattggctagcagggaagtagatgcgcaggtgcaatgtataattgtgtagaggtgaactgttttcgttttttctgggggtgatccacatgtctgcaagtcaaaaagtagactagattttgtgttgtttgatctttgctggtctaaagagtttaatttgcgttatgtactgcttcatgtcagtaagtggtttattgtatctccaatggttttgacaaaagcacatgtattgcgaccaaagcaggtctaatacagcatatacactgcacagggaacttctcttatttcaaataactgccgactcttgtttcattctctctagtcactattatctcaaatctctatgcaggtacactataattttaaagaagtaagtaagtactgctgtctcccttgcagcacacaggatgataaggatctgccatatactactaatctaatccgttcaaagtaatactactaatcttttcatcaaaaaaaataatactactaatctgaggcctgaggcatcttgtgatcttcttaccttcttggtgagcaataaactatatggatgatggatcgtttctttgccggcactgactcacatcacatgcgttaggtgcagattattgttactagtaacaaattagtaccacatgttctttccggtgacggtgaacgcggagttatgggaggcgggcagggggaatccaggggctggacagcatggtttccagtataccaggtgctgcattctgctgcacccagcgttttgctgaagatgctgaccgcatgcatgctaagatgcagacaaacacaccactagaagccacctgcctggtgcttgattacttcgaactagcatggtggcctgcaaaaactagcatcattatattttctctcatataatagcatatatgttttctcaatatattatttaaatatattaaaatgacaacataattttaaattttataataactttacaaaactactaatgtgtaatattcatattgtattttatatacgtgttagttattaattatttttaatatcaaattttagttatttgaaaattatatatattcctatatggactctagactcatcttttaatatttcttttttttaattccgaactttttgtaaattgtatttctatatatactctaggctcttcttcctatattatttatttttatttctgaatttttattatttctaattgtatttctatgtggactctaaactcatctttcaatattctttaatttttaatttcgaatttcagttacttctaaattgtattcctatattgactttaaactcttcttcacatgtttttcttaatcttgaaatttagttatttgtaaattatatttttatatggactctaaactctacttttaattttattatgtttattccgaattttaattagttttaaattcctatatggactctatactctacttctaatattccttatttgtttaattccgaatttctatttttttcttaattgtatttatatatgtactctatactctacttctaatattccttatttttaattccgaatttctattattttctaattatatttctatatgaactctatactctacttctaatattccttatttttaattctgaatttcagttatttcctaattgtatttctatatagactctagtctcctcttttgatattccttattttttaatttcgaatttcagctatttctcaattatatttctatatggactctagtctccttttctaatattccttattttttaattccgaatttcaactatttctaaattgtatttctatatggactctagtctccttttctaatatccattatttttcaattccgaatttcaactatttctaaattgtatttctatatggactctgccttttctttttctccgattaatgtgagaatttttagaccataaaagcgaacgtggaggctcttttttctattcttttaataatataatagataactttaggcctcttttggctttagagtttagaacagataaatgttataggattcatatctttttatagcgttatttggaacaaatgattggacatacaccttatcattaagaacccccgatgaattgagccgataaattttaagattaacgaaatcatcacaaacatctgaatgtcaagtgctatatcacctgctccctctgtctcaaaatataacaatttttagctatcaggatttatcctaacatataacaacttctccatcaatactttctttccaaccaatcataaccatccaccattcactttttccgtctaacttcactactcattcagtcacaatcctccaccattcccttcaacctaccctctctgtaaaaaaaaaacaaatttagaactggatgtgacacatcatagtactataaaatctggacatacatttgtccagattcgttgtattagaatatgtcacatccagtactatgtttcatgagacggagagagtacttttttaataaccatgtctaactctaaaacttcttatattctgggagagtaacactaaaataattagccataaatgtaagtattagaggaagtttaacatacggtccaatcttatcagaacatttatgtgaacttttttcacgttacatcaaacggttatttctctaattttttttcttcttcttgttttacaatcatatgttttgttattgcatttatcgatttttgttatatctatgttttctcgttcgtgcattccacaattcttatatatattgcatgccgtaagctagagacaatggtcatacacatttttactatattcggatggagatttacaaataaacttgaataaatgcttctatattttatgttggtattattagttagggacaattagttattgtttagatctttaatgttttttatgctctccattcagtgaattatgtagagcggctgtagctcttttaagcaaaggttgagaatctttccattctcttaaaaaaattccataccaaattgaattgaattacagatctgactatcattcagtaacaagtggtaagtattaagtacaaactagattgctaccatttcttccatcatttcgatcataaattttacggtgcagtatcaaaagaacagaacacctttctcccagaaagtttggatcttaaattgatgacacggccggatttttgcgtgcatgaccgtaaaagtggtcagttcataaattgttctagacgacacaatcacaaaggcaaaatgacccatgaagcaattgtactcaagtagcagaatttttcatcatcatcgtgatatattacgatcagctgggagcaaccggccaattacgtctccggccatggctgctaccgtcaaacggacacccagcagagcagatcgagatccatccgagctaacactaatggcctagctaattgggaccccagcagctgaggtacatgactgtcctcaacccctcctcggccttctccgctctcctcctctccgccaccgccgccgcagaagctggcagcttcttgccctgcgagacgccggcggcgttggccttggccgccttgtggatggaccgcagcgcgtagttccagcggcagagtccgccctggtccttgagcgcctccacggcgcccacgctcatcgccaccatccacgacgccttcgctgcacccgccattgaaggttgatgacttgattcactggtgatctgtggaaattttcctcgcttgcagtggactcgttgtactgtagtgggttgatgctgtgttggttaagtt
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| CDS seq | atggcgggtgcagcgaaggcgtcgtggatggtggcgatgagcgtgggcgccgtggaggcgctcaaggaccagggcggactctgccgctggaactacgcgctgcggtccatccacaaggcggccaaggccaacgccgccggcgtctcgcagggcaagaagctgccagcttctgcggcggcggtggcggagaggaggagagcggagaaggccgaggaggggttgaggacagtcatgtacctcagctgctgggggaaggcgaaggcgtcgtcgtgggcggcggcgatgagcgtgggcacggtggaggcgctcaaggaccaggccggactgtgccgctggaactacgcgttccggacgctccagcagcgcggcaggcagcaggccgtggccgggacgagcggcgccaagagcggcggcggcgcgcgtgcgctgcagcctgcagcggcggcggcggcgaggaggaaagcccagcagcaagaggaggagctgaggacggtcatgtacctcagcaactggggcccaaacaactaa
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| Protein seq | MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPASAAAVAERRRAEKAEEGLRTVMYLSCWGKAKASSWAAAMSVGTVEALKDQAGLCRWNYAFRTLQQRGRQQAVAGTSGAKSGGGARALQPAAAAAARRKAQQQEEELRTVMYLSNWGPNN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0028350 | OsCMeo_04g0028350.01 | Chr04 | 32222772 | 32227401 | - | NAM | ||
| CDS seq | atggcgggtgcagcgaaggcgtcgtggatggtggcgatgagcgtgggcgccgtggaggcgctcaaggaccagggcggactctgccgctggaactacgcgctgcggtccatccacaaggcggccaaggccaacgccgccggcgtctcgcagggcaagaagctgccagcttctgcggcggcggtggcggagaggaggagagcggagaaggccgaggaggggttgaggacagtcatgtacctcagctgctgggggaaggcgaaggcgtcgtcgtgggcggcggcgatgagcgtgggcacggtggaggcgctcaaggaccaggccggactgtgccgctggaactacgcgttccggacgctccagcagcgcggcaggcagcaggccgtggccgggacgagcggcgccaagagcggcggcggcgcgcgtgcgctgcagcctgcagcggcggcggcggcgaggaggaaagcccagcagcaagaggaggagctgaggacggtcatgtacctcagcaactggggcccaaacaactaa
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| Protein seq | MAGAAKASWMVAMSVGAVEALKDQGGLCRWNYALRSIHKAAKANAAGVSQGKKLPASAAAVAERRRAEKAEEGLRTVMYLSCWGKAKASSWAAAMSVGTVEALKDQAGLCRWNYAFRTLQQRGRQQAVAGTSGAKSGGGARALQPAAAAAARRKAQQQEEELRTVMYLSNWGPNN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0028350 | OsCMeo_04g0028350.02 | Chr04 | 32226980 | 32227501 | - | IsoSeq | ||
| CDS seq | cttaaccaacacagcatcaacccactacagtacaacgagtccactgcaagcgaggaaaatttccacagatcaccagtgaatcaagtcatcaaccttcaatggcgggtgcagcgaaggcgtcgtggatggtgg |
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| Protein seq | LNQHSINPLQYNESTASEENFHRSPVNQVINLQWRVQRRRRGWW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 26.488686 | 4.208355 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0635000 | RBH | 0.0 | 0.0 | 2.146463 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g54230 | RBH | 0.0 | 0.0 | 0.532432 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0635000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027970 | RBH | 0.0 | 0.0 | 1.020845 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028760 | RBH | 2.385508 | 25.829208 | 15.664423 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005400 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0028170 | RBH | 0.047842 | 0.592380 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028420 | RBH | 0.0 | 79.162483 | 3.213439 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0509700 | RBH | 3.463001 | 1.816037 | 11.8711545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0027090 | RBH | 0.0 | 0.0 | 0.026107 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0513500 | RBH | 5.4130025 | 6.037714 | 0.016177 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027530 | RBH | 0.360662 | 3.374799 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027350 | RBH | 0.153478 | 152.103088 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027420 | RBH | 0.0 | 144.354019 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0028020 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0028010 | RBH | 0.0 | 4.475205 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027390 | RBH | 0.564117 | 3.325069 | 9.932290 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027260 | SBH | 0.0 | 1.491151 | 32.491432 |
