Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0002230 | OGI:04011550 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:4007192-4009795 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccgtcatcgctgaaatcgctgcttccgagtgggaaaggtgatcatctttatccttttgcacagtgtggtcccatctctctCccctaagacccctctaaaacatatgttgcatacttcttcacagatgacaagaggaggaccctaatgcaccaggtctccacacttggggagagggtgtcggagttggagaacaaaaatgcccagctgcttgacgagaagggtAaagtggagaagcaattggaggagacaaagcaggaagctcaggtcatctcaaggcagaaagaggaggtggagagtagcttgaagggtcaaaatgaaatgcttgggttgaaggttttgaatgtggaggaaaaatataatcatatggtcgagaagctccagatggacttatgtgcattggtgaaggaaaaaggggtagctgttaaggcattcgatgatgagaaagaaaaaatgatgatggagtcagaggatcttaagaggaggttggaggaaatccaggcgaagaaggatttgatggagagtgaaaaggatatgcttcggtcggaggctatgattacaaagcaaaaacagatcatgtttgaagcagagattgagaggctcaatatggaattggttgtattgacggaggcgaagaaggctgctgcaaaggcatgtgaagctcaaaatgatgaaatcatgaaggaactggaggatcttaagaggaagtttgaggaactgcaaacaaataaggatttagtgcaagctgaaaatgatgaacttctgtcaaatgttttggcaataaaggagaaatatggccagtcagaagcagaggttaagaagctccagatggaattaagtgcattggtgaaggaaaaagaggtagctgttaagacatttgatgacgagaaagacaaaatgatgatggaatcagaggatcttaagaggaggttggaggaaatccaggccaataaggatttggtggagagtgaaaatgataggcttcggtcggaagctctgattacaaagcaaaaacaaatcatgtttgaagcaaagattgagacactcaatatggaattggttgcattgacggaggcgaaggaggttgctgcgaaggcatgtgaagctcaaaatgatgaaatcacaaaggaactggaggatcttaagaggaagtttgaggaactgcaaacaaataaggatttagtggaaggtgaaaatgataagcttcagtcagaggttttggcaatagaggagaaatatggccagtctgaagcaaaagttaagtggcttgagcaaaagttagaggagaaatatagccagtctgaagcagaagttaactggcttaatcagatattgagagtagtggtggaggcgaaggatgcagctgcaaaggcatttgaagctgagaaggtagaaatcttgaaggaatcaggaaatcttaagaggagggtagaggaaattctggttaacaaggatttggttgagaatgaaaatgacgtgcttcggtcagatattctgacaatgaagcagaaatacaatcaatttgaagtagaggttaagagcctcaagaatgaattggaagcattcaaggaggagaaggaggttactgcaaaggcgtttaatgttgagaagacagaaatcctaaaggaattggaggatcaaaagatgaaggtacaggaaatccaggccaagaaggatttggtggagagtgaaaataacgtgcttcagttagatattgtgacaacgaagcagaaatataatcaatttgaagtagagattaagagcctgaagaatgaattgaaagcattagaggaggaaaaggaggttactgcaaaggtgtttaatgttgagaaggcagaaatcctAaaggaattggaggatcttaagaggaaggtgcaggaaatccaggccaacaagtatttagtggaggatgaaaatgataaacttcggttggatgtttctactgcagaacagaaagaaagcatatctgaagcagaggctaagcgtctctggaagatattggatgctttgatggaggcaaaggaggtgactacgaaggcatttgatgctgagaaagaaaaaatcatgaaggaattggaggatcttaagaggaaggtggaggaaatccaggctagcaaggatttggcggaaagtgaaaaggataagcttcggatggagattttaatggcatggcagaaatttgatgccgagaaggaaaaattcatgatggaagcggaggaccttaagaggaaggtagaggaaatccaagttggcaaggaagcggctgagaaagtcgtgcatgacaaggatgctgaggcccataggctaagagacgagttggtgaagatccgtgtttctttatcagagttgcaagcatcatacaatgaacttgatgccaagtattcgtgcctgaatgatgagaagaattcagtctaggaagctctagatgcagagaaggttgaagcatggaagctgaagtcaaaagttcaggaacttgagaattacaatcctgaaaaggatggtgagactgagaattacaatgcagcataggaggaaaagaagattgagattgatgccctcatcagggacaacgagctgctgcactatgcagttgctgaggcataa
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| CDS seq | atgccgtcatcgctgaaatcgctgcttccgagtgggaaagatgacaagaggaggaccctaatgcaccaggtctccacacttggggagagggtgtcggagttggagaacaaaaatgcccagctgcttgacgagaagggtAaagtggagaagcaattggaggagacaaagcaggaagctcaggtcatctcaaggcagaaagaggaggtggagagtagcttgaagggtcaaaatgaaatgcttgggttgaaggttttgaatgtggaggaaaaatataatcatatggtcgagaagctccagatggacttatgtgcattggtgaaggaaaaaggggtagctgttaaggcattcgatgatgagaaagaaaaaatgatgatggagtcagaggatcttaagaggaggttggaggaaatccaggcgaagaaggatttgatggagagtgaaaaggatatgcttcggtcggaggctatgattacaaagcaaaaacagatcatgtttgaagcagagattgagaggctcaatatggaattggttgtattgacggaggcgaagaaggctgctgcaaaggcatgtgaagctcaaaatgatgaaatcatgaaggaactggaggatcttaagaggaagtttgaggaactgcaaacaaataaggatttagtgcaagctgaaaatgatgaacttctgtcaaatgttttggcaataaaggagaaatatggccagtcagaagcagaggttaagaagctccagatggaattaagtgcattggtgaaggaaaaagaggtagctgttaagacatttgatgacgagaaagacaaaatgatgatggaatcagaggatcttaagaggaggttggaggaaatccaggccaataaggatttggtggagagtgaaaatgataggcttcggtcggaagctctgattacaaagcaaaaacaaatcatgtttgaagcaaagattgagacactcaatatggaattggttgcattgacggaggcgaaggaggttgctgcgaaggcatgtgaagctcaaaatgatgaaatcacaaaggaactggaggatcttaagaggaagtttgaggaactgcaaacaaataaggatttagtggaaggtgaaaatgataagcttcagtcagaggttttggcaatagaggagaaatatggccagtctgaagcaaaagttaagtggcttgagcaaaagttagaggagaaatatagccagtctgaagcagaagttaactggcttaatcagatattgagagtagtggtggaggcgaaggatgcagctgcaaaggcatttgaagctgagaaggtagaaatcttgaaggaatcaggaaatcttaagaggagggtagaggaaattctggttaacaaggatttggttgagaatgaaaatgacgtgcttcggtcagatattctgacaatgaagcagaaatacaatcaatttgaagtagaggttaagagcctcaagaatgaattggaagcattcaaggaggagaaggaggttactgcaaaggcgtttaatgttgagaagacagaaatcctaaaggaattggaggatcaaaagatgaaggtacaggaaatccaggccaagaaggatttggtggagagtgaaaataacgtgcttcagttagatattgtgacaacgaagcagaaatataatcaatttgaagtagagattaagagcctgaagaatgaattgaaagcattagaggaggaaaaggaggttactgcaaaggtgtttaatgttgagaaggcagaaatcctAaaggaattggaggatcttaagaggaaggtgcaggaaatccaggccaacaagtatttagtggaggatgaaaatgataaacttcggttggatgaggaaaagaagattgagattgatgccctcatcagggacaacgagctgctgcactatgcagttgctgaggcataa
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| Protein seq | MPSSLKSLLPSGKDDKRRTLMHQVSTLGERVSELENKNAQLLDEKGKVEKQLEETKQEAQVISRQKEEVESSLKGQNEMLGLKVLNVEEKYNHMVEKLQMDLCALVKEKGVAVKAFDDEKEKMMMESEDLKRRLEEIQAKKDLMESEKDMLRSEAMITKQKQIMFEAEIERLNMELVVLTEAKKAAAKACEAQNDEIMKELEDLKRKFEELQTNKDLVQAENDELLSNVLAIKEKYGQSEAEVKKLQMELSALVKEKEVAVKTFDDEKDKMMMESEDLKRRLEEIQANKDLVESENDRLRSEALITKQKQIMFEAKIETLNMELVALTEAKEVAAKACEAQNDEITKELEDLKRKFEELQTNKDLVEGENDKLQSEVLAIEEKYGQSEAKVKWLEQKLEEKYSQSEAEVNWLNQILRVVVEAKDAAAKAFEAEKVEILKESGNLKRRVEEILVNKDLVENENDVLRSDILTMKQKYNQFEVEVKSLKNELEAFKEEKEVTAKAFNVEKTEILKELEDQKMKVQEIQAKKDLVESENNVLQLDIVTTKQKYNQFEVEIKSLKNELKALEEEKEVTAKVFNVEKAEILKELEDLKRKVQEIQANKYLVEDENDKLRLDEEKKIEIDALIRDNELLHYAVAEA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0002230 | OsLima_04g0002230.01 | Chr04 | 4007192 | 4009795 | + | NAM | ||
| CDS seq | atgccgtcatcgctgaaatcgctgcttccgagtgggaaagatgacaagaggaggaccctaatgcaccaggtctccacacttggggagagggtgtcggagttggagaacaaaaatgcccagctgcttgacgagaagggtAaagtggagaagcaattggaggagacaaagcaggaagctcaggtcatctcaaggcagaaagaggaggtggagagtagcttgaagggtcaaaatgaaatgcttgggttgaaggttttgaatgtggaggaaaaatataatcatatggtcgagaagctccagatggacttatgtgcattggtgaaggaaaaaggggtagctgttaaggcattcgatgatgagaaagaaaaaatgatgatggagtcagaggatcttaagaggaggttggaggaaatccaggcgaagaaggatttgatggagagtgaaaaggatatgcttcggtcggaggctatgattacaaagcaaaaacagatcatgtttgaagcagagattgagaggctcaatatggaattggttgtattgacggaggcgaagaaggctgctgcaaaggcatgtgaagctcaaaatgatgaaatcatgaaggaactggaggatcttaagaggaagtttgaggaactgcaaacaaataaggatttagtgcaagctgaaaatgatgaacttctgtcaaatgttttggcaataaaggagaaatatggccagtcagaagcagaggttaagaagctccagatggaattaagtgcattggtgaaggaaaaagaggtagctgttaagacatttgatgacgagaaagacaaaatgatgatggaatcagaggatcttaagaggaggttggaggaaatccaggccaataaggatttggtggagagtgaaaatgataggcttcggtcggaagctctgattacaaagcaaaaacaaatcatgtttgaagcaaagattgagacactcaatatggaattggttgcattgacggaggcgaaggaggttgctgcgaaggcatgtgaagctcaaaatgatgaaatcacaaaggaactggaggatcttaagaggaagtttgaggaactgcaaacaaataaggatttagtggaaggtgaaaatgataagcttcagtcagaggttttggcaatagaggagaaatatggccagtctgaagcaaaagttaagtggcttgagcaaaagttagaggagaaatatagccagtctgaagcagaagttaactggcttaatcagatattgagagtagtggtggaggcgaaggatgcagctgcaaaggcatttgaagctgagaaggtagaaatcttgaaggaatcaggaaatcttaagaggagggtagaggaaattctggttaacaaggatttggttgagaatgaaaatgacgtgcttcggtcagatattctgacaatgaagcagaaatacaatcaatttgaagtagaggttaagagcctcaagaatgaattggaagcattcaaggaggagaaggaggttactgcaaaggcgtttaatgttgagaagacagaaatcctaaaggaattggaggatcaaaagatgaaggtacaggaaatccaggccaagaaggatttggtggagagtgaaaataacgtgcttcagttagatattgtgacaacgaagcagaaatataatcaatttgaagtagagattaagagcctgaagaatgaattgaaagcattagaggaggaaaaggaggttactgcaaaggtgtttaatgttgagaaggcagaaatcctAaaggaattggaggatcttaagaggaaggtgcaggaaatccaggccaacaagtatttagtggaggatgaaaatgataaacttcggttggatgaggaaaagaagattgagattgatgccctcatcagggacaacgagctgctgcactatgcagttgctgaggcataa
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| Protein seq | MPSSLKSLLPSGKDDKRRTLMHQVSTLGERVSELENKNAQLLDEKGKVEKQLEETKQEAQVISRQKEEVESSLKGQNEMLGLKVLNVEEKYNHMVEKLQMDLCALVKEKGVAVKAFDDEKEKMMMESEDLKRRLEEIQAKKDLMESEKDMLRSEAMITKQKQIMFEAEIERLNMELVVLTEAKKAAAKACEAQNDEIMKELEDLKRKFEELQTNKDLVQAENDELLSNVLAIKEKYGQSEAEVKKLQMELSALVKEKEVAVKTFDDEKDKMMMESEDLKRRLEEIQANKDLVESENDRLRSEALITKQKQIMFEAKIETLNMELVALTEAKEVAAKACEAQNDEITKELEDLKRKFEELQTNKDLVEGENDKLQSEVLAIEEKYGQSEAKVKWLEQKLEEKYSQSEAEVNWLNQILRVVVEAKDAAAKAFEAEKVEILKESGNLKRRVEEILVNKDLVENENDVLRSDILTMKQKYNQFEVEVKSLKNELEAFKEEKEVTAKAFNVEKTEILKELEDQKMKVQEIQAKKDLVESENNVLQLDIVTTKQKYNQFEVEIKSLKNELKALEEEKEVTAKVFNVEKAEILKELEDLKRKVQEIQANKYLVEDENDKLRLDEEKKIEIDALIRDNELLHYAVAEA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0158400 | RBH | 0.226059 | 0.0 | 0.138128 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g07890 | SBH | 1.648820 | 0.779276 | 0.582752 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0158400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001950 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002390 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002170 | RBH | 0.0 | 5.029835 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002270 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002200 | SBH | 3.562133 | 4.792177 | 8.721021 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0062200 | RBH | 0.11456 | 0.629068 | 0.007482 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002300 | RBH | 0.0 | 0.159124 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0063400 | SBH | 1.2810975 | 5.9950465 | 0.1335795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002140 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002460 | SBH | 0.095330 | 2.168955 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002150 | RBH | 0.148293 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002190 | SBH | 0.0 | 0.433495 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002380 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002250 | RBH | 0.0 | 0.0 | 0.0 |
