Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g07890 | OGI:04011550 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:4216641-4218582 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACACTTGAGGACAGGGTGTGGGAGTTGGAGCACAAAAACACCCAACTGCTCCACGAGAAGGGTAAACTAGAGAAGCAATTGGAGACAAAAGCGGCAGCTCAGGCCATCTCAAGCCAGAAGGAAGAGGTGGAGAGGAGCTTGAAGGGTGAAAATGATAAGCTTCAGTTGGAGGATTTGACTATGGAGGAAAATTATAGCCAGTCTGAAGCTGAGGTTGAGCAGTTCCAAAAGGAATTAGGTGCATTAGTGGAGGAAAAAGAGGTAGCTGCTAAGACATTTGATGATGACAAAGAAAAAATGAAGATGGAATCAGAGTATCTTAAAAGGAGGTTGGAGGAAATCCATGACAACAAAGATTTCATGAAGACTGAAAATAATAAGCTTCAGTCCGAGGCTTTGATTGTAGAGAAGAAACAAATCATGTTTGAAGCAGAGATTAAGAGACTGAAGATGGAATTGGGGGCAGTGACAGAGGCAAAGGAGGTGGCTGCAAAGGCATTCAATGCTCAAAATGAAGAAATCACCAAGAAACTAGAGGATCTTAAGAGAAAGTTGGAAGAAATCCAAACAAATAAAGACTTAGTGGAAGGTGAAACTAATGAGCTTCAGCCAGAGGTTTTTGCAACAGAGGAGAAAAATAGCCTGTCTGAAGCAGAGATTAAGTGCCTTAAGCAAATATTGGAAGTAGCGATGGAGGTGAAGGAGGCAGCTGCAGAATCATTTGATGCAGAGAAGGAAGAAATCATGAAGCAATCAAACAATCTCAAGAGGAAAATAGAAGAAAATCAAGCTAGCAAGGATTTGGTGGAGAGTGAAAATGACAAGCTTCGGTCAAAGATGGTGACAGTAAAGCAGAAACATAATCAATTTGAAGCAGATAATAAGAGCCTCAAGATAGAATTGGGCGCACTAAAGGAGGCGAAGGAGGCTACTGCAAAAGCATTTGATGTTGAGAAGGCAGGAATCCTAAAGGAATTGGAGGATCCTAAGCGGAAGGTGGAGGAAATTCAAGCTAAGAAGGATTTGGTGGAGCGTGAAAATGATAAATTTCAGTTGGAGGTCCTGACTGGAGAGCAGAAACAAAGCAAGTCTAAAGCAAAGGCTAAGAGTCTCAAGGTGGAACTAAGTGCATTGGTGGAGGCAAAGGAGGCGACTGCAAAGGCATTTGATGTTGAGAAAGCAAAAATCATGAAGGAATTGGAGGATCTTAAGAAAAAGGTGGAGGAAATCCAGGGCAAGAAGGATTTGGTTGAGGGTGAAAAGGATAAGCTTTGGTTGGAGATTTTAATAGTAGAGCAGAAACATAGCATGTATGAATTAGAGGTTAAAAGGCTCAAGTTAGAACTAGGTGCATTGGCAGAGGCAAAGGAAACAGCTATGAACTCATTTGATACTGAGAAGATAAAATTCATAATGGATGTGGAGGACCTTAAGAGGAAGATAGAGGAAATCCAGGTCGGTAAGGAAGCGACTGAGGAAGTAGGGCGCGACAAGGATGCTGAGGCCGATAGGCTGAGGGCTGAGTTGATGAAGATCGGTGTTTCTTTGTCACAGATGCAAGCATCCTATAATGAACTTGATGGTAAGAATTCGCACCTAAATGATGAGAAGAATTCAATCTAGAAAGCAGTAGATGCTAAGAAGGTTGAAGCATGCAAGCTGAAGTAAAAAAATTGGGGAACTTGAAAATTACGATGCTGAAAAGGATGATGAGAATGGGAAACTGAAGGCGGCATTATAGGAAAAGAAGAGTGAGATTGATGCCCTCACCAAGGACAATGAGCTGCTGCATCTCACAGTTGCTGAGGCACAGGAGAAGAATAAGTGTAGCATTTTATCATGCATATCACCATGCAGCTCCAAATAATTAGGTTGGGAATGTGTTGCATTAATAATGTAATGGTTGCAATGAAATAAAACTTGCACTTCCTTTGTTATA
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| CDS seq | ATGACACTTGAGGACAGGGTGTGGGAGTTGGAGCACAAAAACACCCAACTGCTCCACGAGAAGGGTAAACTAGAGAAGCAATTGGAGACAAAAGCGGCAGCTCAGGCCATCTCAAGCCAGAAGGAAGAGGTGGAGAGGAGCTTGAAGGGTGAAAATGATAAGCTTCAGTTGGAGGATTTGACTATGGAGGAAAATTATAGCCAGTCTGAAGCTGAGGTTGAGCAGTTCCAAAAGGAATTAGGTGCATTAGTGGAGGAAAAAGAGGTAGCTGCTAAGACATTTGATGATGACAAAGAAAAAATGAAGATGGAATCAGAGTATCTTAAAAGGAGGTTGGAGGAAATCCATGACAACAAAGATTTCATGAAGACTGAAAATAATAAGCTTCAGTCCGAGGCTTTGATTGTAGAGAAGAAACAAATCATGTTTGAAGCAGAGATTAAGAGACTGAAGATGGAATTGGGGGCAGTGACAGAGGCAAAGGAGGTGGCTGCAAAGGCATTCAATGCTCAAAATGAAGAAATCACCAAGAAACTAGAGGATCTTAAGAGAAAGTTGGAAGAAATCCAAACAAATAAAGACTTAGTGGAAGGTGAAACTAATGAGCTTCAGCCAGAGGTTTTTGCAACAGAGGAGAAAAATAGCCTGTCTGAAGCAGAGATTAAGTGCCTTAAGCAAATATTGGAAGTAGCGATGGAGGTGAAGGAGGCAGCTGCAGAATCATTTGATGCAGAGAAGGAAGAAATCATGAAGCAATCAAACAATCTCAAGAGGAAAATAGAAGAAAATCAAGCTAGCAAGGATTTGGTGGAGAGTGAAAATGACAAGCTTCGGTCAAAGATGGTGACAGTAAAGCAGAAACATAATCAATTTGAAGCAGATAATAAGAGCCTCAAGATAGAATTGGGCGCACTAAAGGAGGCGAAGGAGGCTACTGCAAAAGCATTTGATGTTGAGAAGGCAGGAATCCTAAAGGAATTGGAGGATCCTAAGCGGAAGGTGGAGGAAATTCAAGCTAAGAAGGATTTGGTGGAGCGTGAAAATGATAAATTTCAGTTGGAGGTCCTGACTGGAGAGCAGAAACAAAGCAAGTCTAAAGCAAAGGCTAAGAGTCTCAAGGTGGAACTAAGTGCATTGGTGGAGGCAAAGGAGGCGACTGCAAAGGCATTTGATGTTGAGAAAGCAAAAATCATGAAGGAATTGGAGGATCTTAAGAAAAAGGTGGAGGAAATCCAGGGCAAGAAGGATTTGGTTGAGGGTGAAAAGGATAAGCTTTGGTTGGAGATTTTAATAGTAGAGCAGAAACATAGCATGTATGAATTAGAGGTTAAAAGGCTCAAGTTAGAACTAGGTGCATTGGCAGAGGCAAAGGAAACAGCTATGAACTCATTTGATACTGAGAAGATAAAATTCATAATGGATGTGGAGGACCTTAAGAGGAAGATAGAGGAAATCCAGGTCGGTAAGGAAGCGACTGAGGAAGTAGGGCGCGACAAGGATGCTGAGGCCGATAGGCTGAGGGCTGAGTTGATGAAGATCGGTGTTTCTTTGTCACAGATGCAAGCATCCTATAATGAACTTGATGGTAAGAATTCGCACCTAAATGATGAGAAGAATTCAATCTAG
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| Protein seq | MTLEDRVWELEHKNTQLLHEKGKLEKQLETKAAAQAISSQKEEVERSLKGENDKLQLEDLTMEENYSQSEAEVEQFQKELGALVEEKEVAAKTFDDDKEKMKMESEYLKRRLEEIHDNKDFMKTENNKLQSEALIVEKKQIMFEAEIKRLKMELGAVTEAKEVAAKAFNAQNEEITKKLEDLKRKLEEIQTNKDLVEGETNELQPEVFATEEKNSLSEAEIKCLKQILEVAMEVKEAAAESFDAEKEEIMKQSNNLKRKIEENQASKDLVESENDKLRSKMVTVKQKHNQFEADNKSLKIELGALKEAKEATAKAFDVEKAGILKELEDPKRKVEEIQAKKDLVERENDKFQLEVLTGEQKQSKSKAKAKSLKVELSALVEAKEATAKAFDVEKAKIMKELEDLKKKVEEIQGKKDLVEGEKDKLWLEILIVEQKHSMYELEVKRLKLELGALAEAKETAMNSFDTEKIKFIMDVEDLKRKIEEIQVGKEATEEVGRDKDAEADRLRAELMKIGVSLSQMQASYNELDGKNSHLNDEKNSI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g07890 | LOC_Os04g07890.1 | Chr04 | 4216641 | 4218582 | + | MSU_osa1r7 | ||
| CDS seq | ATGACACTTGAGGACAGGGTGTGGGAGTTGGAGCACAAAAACACCCAACTGCTCCACGAGAAGGGTAAACTAGAGAAGCAATTGGAGACAAAAGCGGCAGCTCAGGCCATCTCAAGCCAGAAGGAAGAGGTGGAGAGGAGCTTGAAGGGTGAAAATGATAAGCTTCAGTTGGAGGATTTGACTATGGAGGAAAATTATAGCCAGTCTGAAGCTGAGGTTGAGCAGTTCCAAAAGGAATTAGGTGCATTAGTGGAGGAAAAAGAGGTAGCTGCTAAGACATTTGATGATGACAAAGAAAAAATGAAGATGGAATCAGAGTATCTTAAAAGGAGGTTGGAGGAAATCCATGACAACAAAGATTTCATGAAGACTGAAAATAATAAGCTTCAGTCCGAGGCTTTGATTGTAGAGAAGAAACAAATCATGTTTGAAGCAGAGATTAAGAGACTGAAGATGGAATTGGGGGCAGTGACAGAGGCAAAGGAGGTGGCTGCAAAGGCATTCAATGCTCAAAATGAAGAAATCACCAAGAAACTAGAGGATCTTAAGAGAAAGTTGGAAGAAATCCAAACAAATAAAGACTTAGTGGAAGGTGAAACTAATGAGCTTCAGCCAGAGGTTTTTGCAACAGAGGAGAAAAATAGCCTGTCTGAAGCAGAGATTAAGTGCCTTAAGCAAATATTGGAAGTAGCGATGGAGGTGAAGGAGGCAGCTGCAGAATCATTTGATGCAGAGAAGGAAGAAATCATGAAGCAATCAAACAATCTCAAGAGGAAAATAGAAGAAAATCAAGCTAGCAAGGATTTGGTGGAGAGTGAAAATGACAAGCTTCGGTCAAAGATGGTGACAGTAAAGCAGAAACATAATCAATTTGAAGCAGATAATAAGAGCCTCAAGATAGAATTGGGCGCACTAAAGGAGGCGAAGGAGGCTACTGCAAAAGCATTTGATGTTGAGAAGGCAGGAATCCTAAAGGAATTGGAGGATCCTAAGCGGAAGGTGGAGGAAATTCAAGCTAAGAAGGATTTGGTGGAGCGTGAAAATGATAAATTTCAGTTGGAGGTCCTGACTGGAGAGCAGAAACAAAGCAAGTCTAAAGCAAAGGCTAAGAGTCTCAAGGTGGAACTAAGTGCATTGGTGGAGGCAAAGGAGGCGACTGCAAAGGCATTTGATGTTGAGAAAGCAAAAATCATGAAGGAATTGGAGGATCTTAAGAAAAAGGTGGAGGAAATCCAGGGCAAGAAGGATTTGGTTGAGGGTGAAAAGGATAAGCTTTGGTTGGAGATTTTAATAGTAGAGCAGAAACATAGCATGTATGAATTAGAGGTTAAAAGGCTCAAGTTAGAACTAGGTGCATTGGCAGAGGCAAAGGAAACAGCTATGAACTCATTTGATACTGAGAAGATAAAATTCATAATGGATGTGGAGGACCTTAAGAGGAAGATAGAGGAAATCCAGGTCGGTAAGGAAGCGACTGAGGAAGTAGGGCGCGACAAGGATGCTGAGGCCGATAGGCTGAGGGCTGAGTTGATGAAGATCGGTGTTTCTTTGTCACAGATGCAAGCATCCTATAATGAACTTGATGGTAAGAATTCGCACCTAAATGATGAGAAGAATTCAATCTAG
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| Protein seq | MTLEDRVWELEHKNTQLLHEKGKLEKQLETKAAAQAISSQKEEVERSLKGENDKLQLEDLTMEENYSQSEAEVEQFQKELGALVEEKEVAAKTFDDDKEKMKMESEYLKRRLEEIHDNKDFMKTENNKLQSEALIVEKKQIMFEAEIKRLKMELGAVTEAKEVAAKAFNAQNEEITKKLEDLKRKLEEIQTNKDLVEGETNELQPEVFATEEKNSLSEAEIKCLKQILEVAMEVKEAAAESFDAEKEEIMKQSNNLKRKIEENQASKDLVESENDKLRSKMVTVKQKHNQFEADNKSLKIELGALKEAKEATAKAFDVEKAGILKELEDPKRKVEEIQAKKDLVERENDKFQLEVLTGEQKQSKSKAKAKSLKVELSALVEAKEATAKAFDVEKAKIMKELEDLKKKVEEIQGKKDLVEGEKDKLWLEILIVEQKHSMYELEVKRLKLELGALAEAKETAMNSFDTEKIKFIMDVEDLKRKIEEIQVGKEATEEVGRDKDAEADRLRAELMKIGVSLSQMQASYNELDGKNSHLNDEKNSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.648820 | 0.779276 | 0.582752 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0161100 | RBH | 2.419485 | 1.149752 | 2.246469 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g07600 | RBH | 0.152661 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0161100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002140 | RBH | 0.403575 | 20.964119 | 8.346691 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002440 | RBH | 0.108136 | 0.551527 | 0.382590 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002220 | RBH | 1.656075 | 4.458923 | 5.200517 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002310 | RBH | 0.058668 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002200 | SBH | 3.562133 | 4.792177 | 8.721021 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0065100 | RBH | 2.9757485 | 6.3264815 | 0.279586 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002340 | RBH | 1.290577 | 0.354366 | 2.126323 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0063400 | RBH | 1.2810975 | 5.9950465 | 0.1335795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002260 | RBH | 0.136768 | 0.108008 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002490 | RBH | 2.382287 | 9.998866 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002220 | SBH | 2.694831 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002140 | SBH | 0.048971 | 0.223775 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002190 | SBH | 0.0 | 0.433495 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002420 | RBH | 0.253895 | 0.000000 | 2.522451 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002280 | RBH | 1.468057 | 4.972467 | 1.555797 |
