Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0002140 | OGI:04011550 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:3655656-3657650 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcctcaaccgttgatttattagttttattaccagtagttatttatgatgatagtataaatatatatgatctattcgattctaatgcaaatgacagggtgaggaccctatcacaccaagtctccacacttggggacagagtgtgggagttggagcacaaaaatacccggctgcttggtgagaagggtaaactggagaagcaattggaggagacgaaggcggcggttcaggccatctcaagcgagaaggaagaggtggagaggagcttgaagggtgaaaatgataagctccggttggaggtttcgacggcagaggacaaatatagccagtctgcagtagagattgagaagctctagaaggaattagatgcattggtggaggtgaaagaggtagctgcaaaggcatttgatgatgagaaagcaaaaatgatgatggaatctgtggatcttaagagtaggatagaggaaatccagggcaacatggatatgattgagagtgaaaacgataagcttcggtcagaagctttgattgcagagcagaaactaaacatatgtgaagcagagattgagagacttatgatggaattgggtggattgacagaagcgaaggaagcagctgcaaaagcatttgacactcaaaatgaagaaatcacgaaggatctagaggatcttaagacaaagttggaggaaatcaaaacaaataaggatctagtggaaagtgaaaatggtaagcttcggtcggagcttttgtcagcagaggagaaatacagccagtctgaagcagaggttaagtatcttaagcaggtaatgggagcagtggtggaggcgaaggaggcagctgcaaaggcatttgctgctgagaaggaagacatcatgaaagaatcagacaatcttaagaggaaagttaaggaaatttaggatagcaaggttttggtggagagtgaaaatgatgagcttcggtcagagattttaactatgaagcagaaacatggtcaatttgaactagaggttactagcctcaagaaggagctgggagcactacaggaggcaaaggagaccactacaaaggcgtttgaggttgagaaggcagaaatcctaaaggaattggaggatcttaggaggaaggtggaggaaatccaaaccaacaaggatttagtggagggagaaaatgataaacttcggttggatgttttgactgcacaacagaaacaaagcatattagaagtagagggtaacaatctcaagatggaattgggtgcattggtggaggcaaaggaggcggctacaaaggcattcgacgctaagaaagcaaaaataatgaaggaattggaggatgttaagaggaagatggaggaaatccaggtcaagaaggatttggtggagggtgaaaaggataagcttcggttggagatattaatagcagagcagaaacatagcatgtctgaattggaggttaaaaggctcaagatggaacttggtgcattggtagaggcaaatgggatagctgtgaagtcatttgatgccgagaaggcaaaattcatcagggaaatgggggacctcaagaggaagattgaggaaatccaggtcagcaaggaagcttctgaggaagtagggcgcaagaagaatgcagaggctgataggctgagggctgagttggtgaagatccatgtttctttatcacaactacaagcatcctataatgaacttgatgctaagcattcgctcctgagtgacgagaagaattcagtccagaaagcattagatgttgagaaagttgaagcatgtaagctaaagtcaaaatttgaggaacttgagaattataaggctgaaaaggatgaagagactagaaaactgaaggcggcattggaggaaaagaaaagtGAgattgatgtcctcagcaaggacaatgagctgctgcatctcgcagttgctgaggcacaggagaagaataagggcagcatgttatcatgcttatcaccatgcggctctgaataa
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| CDS seq | atggcctcaaccgttgatttattagttttattaccagtagttatttatgatgatagtataaatatatatgatctattcgattctaatgcaaatgacagggtgaggaccctatcacaccaagtctccacacttggggacagagtgtgggagttggagcacaaaaatacccggctgcttggtgagaagggtaaactggagaagcaattggaggagacgaaggcggcggttcaggccatctcaagcgagaaggaagaggtggagaggagcttgaagggtgaaaatgataagctccggttggaggtgaaagaggtagctgcaaaggcatttgatgatgagaaagcaaaaatgatgatggaatctgtggatcttaagagtaggatagaggaaatccagggcaacatggatatgattgagagtgaaaacgataagcttcggtcagaagctttgattgcagagcagaaactaaacatatgtgaagcagagattgagagacttatgatggaattgggtggattgacagaagcgaaggaagcagctgcaaaagcatttgacactcaaaatgaagaaatcacgaaggatctagaggatcttaagacaaagttggaggaaatcaaaacaaataaggatctagtggaaagtgaaaatggtaagcttcggtcggagcttttgtcagcagaggagaaatacagccagtctgaagcagaggttaagtatcttaagcaggcaaaggaggcggctacaaaggcattcgacgctaagaaagcaaaaataatgaaggaattggaggatgttaagaggaagatggaggaaatccaggtcaagaaggatttggtggagggtgaaaaggataagcttcggttggagatattaatagcagagcagaaacatagcatgtctgaattggagaaagcattagatgttgagaaagttgaagcatgtaagctaaagtcaaaatttgaggaacttgagaattataaggctgaaaaggatgaagagactagaaaactgaaggcggcattggaggaaaagaaaagtGAgattgatgtcctcagcaaggacaatgagctgctgcatctcgcagttgctgaggcacaggagaagaataagggcagcatgttatcatgcttatcaccatgcggctctgaataa
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| Protein seq | MASTVDLLVLLPVVIYDDSINIYDLFDSNANDRVRTLSHQVSTLGDRVWELEHKNTRLLGEKGKLEKQLEETKAAVQAISSEKEEVERSLKGENDKLRLEVKEVAAKAFDDEKAKMMMESVDLKSRIEEIQGNMDMIESENDKLRSEALIAEQKLNICEAEIERLMMELGGLTEAKEAAAKAFDTQNEEITKDLEDLKTKLEEIKTNKDLVESENGKLRSELLSAEEKYSQSEAEVKYLKQAKEAATKAFDAKKAKIMKELEDVKRKMEEIQVKKDLVEGEKDKLRLEILIAEQKHSMSELEKALDVEKVEACKLKSKFEELENYKAEKDEETRKLKAALEEKKSEIDVLSKDNELLHLAVAEAQEKNKGSMLSCLSPCGSE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0002140 | OsLima_04g0002140.01 | Chr04 | 3655656 | 3657650 | + | NAM | ||
| CDS seq | atggcctcaaccgttgatttattagttttattaccagtagttatttatgatgatagtataaatatatatgatctattcgattctaatgcaaatgacagggtgaggaccctatcacaccaagtctccacacttggggacagagtgtgggagttggagcacaaaaatacccggctgcttggtgagaagggtaaactggagaagcaattggaggagacgaaggcggcggttcaggccatctcaagcgagaaggaagaggtggagaggagcttgaagggtgaaaatgataagctccggttggaggtgaaagaggtagctgcaaaggcatttgatgatgagaaagcaaaaatgatgatggaatctgtggatcttaagagtaggatagaggaaatccagggcaacatggatatgattgagagtgaaaacgataagcttcggtcagaagctttgattgcagagcagaaactaaacatatgtgaagcagagattgagagacttatgatggaattgggtggattgacagaagcgaaggaagcagctgcaaaagcatttgacactcaaaatgaagaaatcacgaaggatctagaggatcttaagacaaagttggaggaaatcaaaacaaataaggatctagtggaaagtgaaaatggtaagcttcggtcggagcttttgtcagcagaggagaaatacagccagtctgaagcagaggttaagtatcttaagcaggcaaaggaggcggctacaaaggcattcgacgctaagaaagcaaaaataatgaaggaattggaggatgttaagaggaagatggaggaaatccaggtcaagaaggatttggtggagggtgaaaaggataagcttcggttggagatattaatagcagagcagaaacatagcatgtctgaattggagaaagcattagatgttgagaaagttgaagcatgtaagctaaagtcaaaatttgaggaacttgagaattataaggctgaaaaggatgaagagactagaaaactgaaggcggcattggaggaaaagaaaagtGAgattgatgtcctcagcaaggacaatgagctgctgcatctcgcagttgctgaggcacaggagaagaataagggcagcatgttatcatgcttatcaccatgcggctctgaataa
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| Protein seq | MASTVDLLVLLPVVIYDDSINIYDLFDSNANDRVRTLSHQVSTLGDRVWELEHKNTRLLGEKGKLEKQLEETKAAVQAISSEKEEVERSLKGENDKLRLEVKEVAAKAFDDEKAKMMMESVDLKSRIEEIQGNMDMIESENDKLRSEALIAEQKLNICEAEIERLMMELGGLTEAKEAAAKAFDTQNEEITKDLEDLKTKLEEIKTNKDLVESENGKLRSELLSAEEKYSQSEAEVKYLKQAKEAATKAFDAKKAKIMKELEDVKRKMEEIQVKKDLVEGEKDKLRLEILIAEQKHSMSELEKALDVEKVEACKLKSKFEELENYKAEKDEETRKLKAALEEKKSEIDVLSKDNELLHLAVAEAQEKNKGSMLSCLSPCGSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0156200 | SBH | 1.994539 | 0.801862 | 1.477003 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g07280 | RBH | 1.193407 | 0.477181 | 0.336403 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0156200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002030 | SBH | 0.621633 | 11.753783 | 2.363767 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002350 | SBH | 0.0 | 0.000000 | 0.022317 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002150 | SBH | 0.677213 | 4.254839 | 2.550593 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002220 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002120 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0062200 | SBH | 0.11456 | 0.629068 | 0.007482 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002250 | SBH | 0.097291 | 0.0 | 0.506616 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0063400 | SBH | 1.2810975 | 5.9950465 | 0.1335795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002220 | SBH | 0.051991 | 0.084238 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002380 | RBH | 0.079358 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002220 | SBH | 2.694831 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002060 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002090 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002340 | SBH | 0.0 | 0.0 | 0.306953 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002160 | RBH | 0.0 | 0.0 | 0.0 |
