Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0002190 | OGI:04011570 | 3/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:3692538-3692965 | ||||||||
| Gene Symbol | OsFRDL4, FRDL4, MATE | ||||||||||
| DNA seq | cggcacgacgaccatggcggtgttccagatctgcgcccaagtctggctcgccaagtcgctcctcgccgtcgccagccaggtgagctacctacctacctagcttagcctaaattccaatgatatatgcatagctgcttaattaactttgcttaatttgattaatcaacctcaggccttgcttgccagcgtgtttgcaaagaaggatcactacaaggtggcggtgaccaccgcctgcgtgctacagctcgccgtcgtcctcggcgtcgggatgacagccttccttgccgccggcatgtggttcggcggcggcgttttcaccagcgatgccgccatcatcagcaccatccacaaaggcgttccggtacgatggtcatcataagcaagatcagattaatcttcagagattagtaaacatttttctcatgaac
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| CDS seq | atggcggtgttccagatctgcgcccaagtctggctcgccaagtcgctcctcgccgtcgccagccaggccttgcttgccagcgtgtttgcaaagaaggatcactacaaggtggcggtgaccaccgcctgcgtgctacagctcgccgtcgtcctcggcgtcgggatgacagccttccttgccgccggcatgtggttcggcggcggcgttttcaccagcgatgccgccatcatcagcaccatccacaaaggcgttccggtacgatggtcatcataa |
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| Protein seq | MAVFQICAQVWLAKSLLAVASQALLASVFAKKDHYKVAVTTACVLQLAVVLGVGMTAFLAAGMWFGGGVFTSDAAIISTIHKGVPVRWSS |
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| Function | Protein DETOXIFICATION 43 [UniProtKB/Swiss-Prot:Q9SFB0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0002190 | OsLima_04g0002190.01 | Chr04 | 3692538 | 3692965 | + | NAM | ||
| CDS seq | atggcggtgttccagatctgcgcccaagtctggctcgccaagtcgctcctcgccgtcgccagccaggccttgcttgccagcgtgtttgcaaagaaggatcactacaaggtggcggtgaccaccgcctgcgtgctacagctcgccgtcgtcctcggcgtcgggatgacagccttccttgccgccggcatgtggttcggcggcggcgttttcaccagcgatgccgccatcatcagcaccatccacaaaggcgttccggtacgatggtcatcataa
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| Protein seq | MAVFQICAQVWLAKSLLAVASQALLASVFAKKDHYKVAVTTACVLQLAVVLGVGMTAFLAAGMWFGGGVFTSDAAIISTIHKGVPVRWSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0919100 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g69010 | SBH | 0.092884 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0919100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003800 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004040 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0016770 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0016810 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004060 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0661600 | SBH | 0 | 0.0393155 | 4.585022 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004050 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0663200 | SBH | 0.165121 | 0 | 1.48874 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003830 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004050 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005820 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002110 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003970 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003890 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002210 | RBH | 0.0 | 0.0 | 0.0 |
