Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsNip_01g0919100		OGI:01011440 \| 16/16			Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)			Chr01:40093456-40097016		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		OsFRDL4, FRDL4, MATE
DNA seq		ACCCACCACGGCTCCAAAACCGCTGCTTTCCTCTAGGTGATCTTGCTCAAATTAATCCCTGGTTAGTCTTTCTCTACCTTGTTAATTTGCATCCACATTATTAATGATACTAAGCACGCTGTTTCATCCTTAATCAGCACAAGCACGTAAGCTGCGCGTACGGTCATTCGGATTAGCAAGTTGCTGATGATAATTAGTCCTTGTTAATTTGGCACTCATTATGCTACATGCAGATCGACGAGCTAAGCAACACCTGCATGGCGAGGAGTTCATCAGCTCCCGAATCCATGGAGGCGGATCACCAGCTGACAGCGACAGTGACAGCTGCTGCTTCCGGCGACATGCCGGTGACCGAGCAGCAGCAGCAGAAACAGATGGTGGCGGTGGCGGCGCCACCGGCGACCGAGAATGCTGATGCTGCCGGCGGCGGCGGCGGCGATAATGGCGACCACTTGCCGCCGACGGCGACATCGTTGCTGGGCGGGGCGAGGAGGACGGGGCTGCATCTGTTCGTGCTGAACGCGAGGAGCGCGCTGAGGCTGGACGAGCTCGGCGCGGAGGTGCTGCGCATCGCCGTGCCGGCGTCGCTGGCGCTGACGGCCGACCCGCTGGCGTCGCTGATCGACACGGCGTTCATCGGCCGGATCGGGTCCGTGGAGATCGCCGCCGTGGGCGTCGCCATCGCGGTGTTCAACCAGGTCATGAAGGTGTGCATCTACCCGCTCGTCAGCGTCACCACCTCCTTCGTCGCCGAGGAGGACGCCATCCTCAGCAAGGGCGCCGCCGGAGCCGACGACGACAACGACGACGGCCACGACGCCAAAGGCCACGGTGCCAGTGCCGCCGCCGTCGCGGATCCGGAGAAGCAGCAGGTGGTGGGTGTGGATTCAGCTGAAACCAATGGCGCCGAGGTCTCGACGGCGGCGGTGCGCACTACTGACGACAAGAAGGCCGCCGCCGCCGGCGTCGGCGTCGGCAAATGCAGGAGGAGATTCGTGCCGTCCGTGACGTCAGCGCTGATCGTAGGCGCGTTCCTCGGTCTGCTCCAGGCCGTATTCCTCGTTGCCGCCGGCAAGCCGCTGCTGCGCATCATGGGCGTCAAGCCGGTCAGTATATATATATATACTCATTTCTGCTCGTTTTCAGATTTCTTTTTTTATGATGTTTTAAATAAAATCCGGCCTCTACATTTCGAAGGATATACATAGCCACAATATTACATCACCAAACAATCGCGGTTACAAACAAGTTCAAAAGCAAACACCACCATAGAAGACAAATAGACGACAAACACATCTAGAACAAGCCTCACAACAAAAGATTTCAATTAACAATTCAATACTTGGAATTCAATACTCTCCAACTCTATCTAGATTTTGAGTAGAATTTCATAATGGTAACTTTCAATTTTTGGTACCCAATCTTCACAGCTTTCTCATCACCCTCTTTAAGATGCAAAGGCCACTGGTGAATCCAGTGCGTCCCCGAAAATAACCTGCATTTTTTTTCAGTTTTCTACAGGAAAAAAATGGTTATTCTTTTACTTTTGATTATTCGTTATTGCTGTATTAGCATCCGGTGTTTGAATTACTGTGTCGATTAATGACAGGGTTCACCAATGATGATCCCTGCACTGCGATACCTGGTAGTGAGATCTCTGGGTGCTCCGGCCGTGCTGCTGTCTCTGGCAATGCAAGGTGTTTTCAGAGGATTCAAGGACACCAAGACACCCTTATATGCAACTGGTAAGTATAAAACATCCTACTCGTATTAATTAGCTACCACTAACAATGAAATTAATGACTGATTTATCATTACGTTTTCTACAGTGACCGGCGACCTAGCGAACATCGCACTGGATCCGATCCTGATATTCACCTGCCGTTTTGGTGTGGTCGGTGCAGCCATTGCCCATGTCATTTCTCAGTAAGGATCGATCACTCTTGTCACTTGTCAGACCGTTATATCCACTAATGTTAACACTAATTTCCCCAAAATTAACCGTGTGATATGTCCTAATATTTCAGGTACCTGATCACGCTGATAATGCTGTGCAAGCTCGTGAGGAAGGTCGATGTCATCCCGTCCAGTCTAAAATCACTCAAGTTTCGTCGTTTCCTCGGATGCGGTAAGCAGAAAAATGGCACGGCATTTTTGGACAGTGAAGTGCAGTGTCTGTTTTTTCTTTTTTTTTCCCTTCCAAGTAGATCAGTAGAAGAAGTAAAGGTGAATAGATTTGTTTGGGTCCAACAAAAATTATCTCGCGGTATCGCTACGACGGTACCTTACGGTACTCAATCATTTTGGAGTATCCAACGATCGAAAACGATTTGATACCATGAGTACCGGTATCTCGAGATATTTTTTTTTTATCGGAGCAAATCTCAGAGGTGAGGAAGCTAGTGGTGATTGATCTGAATATGTGATGCTGCAGGGTTTCTGCTGCTGGCGAGGGTGGTGGCCGTAACGTTCTGCGTGACGCTGGCGGCGTCGCTCGCGGCGCGCCACGGCGCGACAGCCATGGCGGCGTTCCAGATCTGCGCCCAAGTCTGGCTCGCCTCATCGCTCCTCGCCGACGGCCTCGCTGTCGCCGGCCAGGTGAGCTAGCTAGCTAGCTACCTAGCTTAGCTACATTCCGATGATATGCATGGCTGCTTGATTAATTTGGCTTAAATTGATCGATCAATCTCAGGCCTTGCTTGCCAGCGCGTTTGCAAAGAAGGATCACTACAAGGTGGCGGTGACCACCGCCCGCGTGCTGCAGCTCGCCGTTGTCCTCGGCGTTGGGCTGACGGCCTTCCTCGCCGCCGGCATGTGGTTCGGCGCCGGCGTTTTCACCAGCGACGCCGCCGTCATCAGCACCATCCACAGAGGCGTTCCGGTGAGATGTTCATCATAAGCAGGAACAGATTAATCTTCAGAGATTAAGTAAAAAATTGTCTCATGAACATATCTGACGATTGTCTCTAAATCGATCAGTTCGTCGCCGGCACGCAGACGATAAACACGCTGGCCTTCGTCTTCGACGGCGTCAACTTCGGCGCCTCCGACTACGCCTTCGCTGCATACTCCATGGCACGAACACATTAACCTTTGCCTTAATTAAACTTTTTGAATCGATTAAACCTTAAAAAGTTAAAATGGACACCATGTAACTGACAATGCGGCGATGCATCGATTCAATTGCAGGTCGGCGTAGCGGCGGTGACGATCCCGTGCTTGGTTCTTCTCTCGTCGCACGGCGGGTTCGTCGGGATCTGGATCGCCTTGGCCATCTACATGAGCGTCAGAGCATTTGCTAGCACCTGGAGGTAATTGATTAACACTCTAAGATGTGCATTCTTGTGCAAACTGTGTTCGTGATTTTGCAGTCTGAATAAAATCAGCCTGAATTTTAAATTTTGTTCTCGATAATTTGGAAGCAATTTTAAGTTTAACTGCAGCATGACTGATCTAATTACTGAATGTTTTATGAATTTCTGCAGGATGGGAGCAGCCAGGGGGCCGTGGAAGTTTCTTCGCAAATGAGCATATGATCAGTATCTAGCGTAGTAGTATTTT More
CDS seq		ATGGCGAGGAGTTCATCAGCTCCCGAATCCATGGAGGCGGATCACCAGCTGACAGCGACAGTGACAGCTGCTGCTTCCGGCGACATGCCGGTGACCGAGCAGCAGCAGCAGAAACAGATGGTGGCGGTGGCGGCGCCACCGGCGACCGAGAATGCTGATGCTGCCGGCGGCGGCGGCGGCGATAATGGCGACCACTTGCCGCCGACGGCGACATCGTTGCTGGGCGGGGCGAGGAGGACGGGGCTGCATCTGTTCGTGCTGAACGCGAGGAGCGCGCTGAGGCTGGACGAGCTCGGCGCGGAGGTGCTGCGCATCGCCGTGCCGGCGTCGCTGGCGCTGACGGCCGACCCGCTGGCGTCGCTGATCGACACGGCGTTCATCGGCCGGATCGGGTCCGTGGAGATCGCCGCCGTGGGCGTCGCCATCGCGGTGTTCAACCAGGTCATGAAGGTGTGCATCTACCCGCTCGTCAGCGTCACCACCTCCTTCGTCGCCGAGGAGGACGCCATCCTCAGCAAGGGCGCCGCCGGAGCCGACGACGACAACGACGACGGCCACGACGCCAAAGGCCACGGTGCCAGTGCCGCCGCCGTCGCGGATCCGGAGAAGCAGCAGGTGGTGGGTGTGGATTCAGCTGAAACCAATGGCGCCGAGGTCTCGACGGCGGCGGTGCGCACTACTGACGACAAGAAGGCCGCCGCCGCCGGCGTCGGCGTCGGCAAATGCAGGAGGAGATTCGTGCCGTCCGTGACGTCAGCGCTGATCGTAGGCGCGTTCCTCGGTCTGCTCCAGGCCGTATTCCTCGTTGCCGCCGGCAAGCCGCTGCTGCGCATCATGGGCGTCAAGCCGGGTTCACCAATGATGATCCCTGCACTGCGATACCTGGTAGTGAGATCTCTGGGTGCTCCGGCCGTGCTGCTGTCTCTGGCAATGCAAGGTGTTTTCAGAGGATTCAAGGACACCAAGACACCCTTATATGCAACTGTGACCGGCGACCTAGCGAACATCGCACTGGATCCGATCCTGATATTCACCTGCCGTTTTGGTGTGGTCGGTGCAGCCATTGCCCATGTCATTTCTCAGTACCTGATCACGCTGATAATGCTGTGCAAGCTCGTGAGGAAGGTCGATGTCATCCCGTCCAGTCTAAAATCACTCAAGTTTCGTCGTTTCCTCGGATGCGGGTTTCTGCTGCTGGCGAGGGTGGTGGCCGTAACGTTCTGCGTGACGCTGGCGGCGTCGCTCGCGGCGCGCCACGGCGCGACAGCCATGGCGGCGTTCCAGATCTGCGCCCAAGTCTGGCTCGCCTCATCGCTCCTCGCCGACGGCCTCGCTGTCGCCGGCCAGGCCTTGCTTGCCAGCGCGTTTGCAAAGAAGGATCACTACAAGGTGGCGGTGACCACCGCCCGCGTGCTGCAGCTCGCCGTTGTCCTCGGCGTTGGGCTGACGGCCTTCCTCGCCGCCGGCATGTGGTTCGGCGCCGGCGTTTTCACCAGCGACGCCGCCGTCATCAGCACCATCCACAGAGGCGTTCCGTTCGTCGCCGGCACGCAGACGATAAACACGCTGGCCTTCGTCTTCGACGGCGTCAACTTCGGCGCCTCCGACTACGCCTTCGCTGCATACTCCATGGTCGGCGTAGCGGCGGTGACGATCCCGTGCTTGGTTCTTCTCTCGTCGCACGGCGGGTTCGTCGGGATCTGGATCGCCTTGGCCATCTACATGAGCGTCAGAGCATTTGCTAGCACCTGGAGGATGGGAGCAGCCAGGGGGCCGTGGAAGTTTCTTCGCAAATGA More
Protein seq		MARSSSAPESMEADHQLTATVTAAASGDMPVTEQQQQKQMVAVAAPPATENADAAGGGGGDNGDHLPPTATSLLGGARRTGLHLFVLNARSALRLDELGAEVLRIAVPASLALTADPLASLIDTAFIGRIGSVEIAAVGVAIAVFNQVMKVCIYPLVSVTTSFVAEEDAILSKGAAGADDDNDDGHDAKGHGASAAAVADPEKQQVVGVDSAETNGAEVSTAAVRTTDDKKAAAAGVGVGKCRRRFVPSVTSALIVGAFLGLLQAVFLVAAGKPLLRIMGVKPGSPMMIPALRYLVVRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVTGDLANIALDPILIFTCRFGVVGAAIAHVISQYLITLIMLCKLVRKVDVIPSSLKSLKFRRFLGCGFLLLARVVAVTFCVTLAASLAARHGATAMAAFQICAQVWLASSLLADGLAVAGQALLASAFAKKDHYKVAVTTARVLQLAVVLGVGLTAFLAAGMWFGAGVFTSDAAVISTIHRGVPFVAGTQTINTLAFVFDGVNFGASDYAFAAYSMVGVAAVTIPCLVLLSSHGGFVGIWIALAIYMSVRAFASTWRMGAARGPWKFLRK
Function		Protein DETOXIFICATION 42 [UniProtKB/Swiss-Prot:Q9SYD6]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNip_01g0919100	OsNip_01t0919100-01	Chr01	40093456	40097016	+	RAP2018-11-26
CDS seq	ATGGCGAGGAGTTCATCAGCTCCCGAATCCATGGAGGCGGATCACCAGCTGACAGCGACAGTGACAGCTGCTGCTTCCGGCGACATGCCGGTGACCGAGCAGCAGCAGCAGAAACAGATGGTGGCGGTGGCGGCGCCACCGGCGACCGAGAATGCTGATGCTGCCGGCGGCGGCGGCGGCGATAATGGCGACCACTTGCCGCCGACGGCGACATCGTTGCTGGGCGGGGCGAGGAGGACGGGGCTGCATCTGTTCGTGCTGAACGCGAGGAGCGCGCTGAGGCTGGACGAGCTCGGCGCGGAGGTGCTGCGCATCGCCGTGCCGGCGTCGCTGGCGCTGACGGCCGACCCGCTGGCGTCGCTGATCGACACGGCGTTCATCGGCCGGATCGGGTCCGTGGAGATCGCCGCCGTGGGCGTCGCCATCGCGGTGTTCAACCAGGTCATGAAGGTGTGCATCTACCCGCTCGTCAGCGTCACCACCTCCTTCGTCGCCGAGGAGGACGCCATCCTCAGCAAGGGCGCCGCCGGAGCCGACGACGACAACGACGACGGCCACGACGCCAAAGGCCACGGTGCCAGTGCCGCCGCCGTCGCGGATCCGGAGAAGCAGCAGGTGGTGGGTGTGGATTCAGCTGAAACCAATGGCGCCGAGGTCTCGACGGCGGCGGTGCGCACTACTGACGACAAGAAGGCCGCCGCCGCCGGCGTCGGCGTCGGCAAATGCAGGAGGAGATTCGTGCCGTCCGTGACGTCAGCGCTGATCGTAGGCGCGTTCCTCGGTCTGCTCCAGGCCGTATTCCTCGTTGCCGCCGGCAAGCCGCTGCTGCGCATCATGGGCGTCAAGCCGGGTTCACCAATGATGATCCCTGCACTGCGATACCTGGTAGTGAGATCTCTGGGTGCTCCGGCCGTGCTGCTGTCTCTGGCAATGCAAGGTGTTTTCAGAGGATTCAAGGACACCAAGACACCCTTATATGCAACTGTGACCGGCGACCTAGCGAACATCGCACTGGATCCGATCCTGATATTCACCTGCCGTTTTGGTGTGGTCGGTGCAGCCATTGCCCATGTCATTTCTCAGTACCTGATCACGCTGATAATGCTGTGCAAGCTCGTGAGGAAGGTCGATGTCATCCCGTCCAGTCTAAAATCACTCAAGTTTCGTCGTTTCCTCGGATGCGGGTTTCTGCTGCTGGCGAGGGTGGTGGCCGTAACGTTCTGCGTGACGCTGGCGGCGTCGCTCGCGGCGCGCCACGGCGCGACAGCCATGGCGGCGTTCCAGATCTGCGCCCAAGTCTGGCTCGCCTCATCGCTCCTCGCCGACGGCCTCGCTGTCGCCGGCCAGGCCTTGCTTGCCAGCGCGTTTGCAAAGAAGGATCACTACAAGGTGGCGGTGACCACCGCCCGCGTGCTGCAGCTCGCCGTTGTCCTCGGCGTTGGGCTGACGGCCTTCCTCGCCGCCGGCATGTGGTTCGGCGCCGGCGTTTTCACCAGCGACGCCGCCGTCATCAGCACCATCCACAGAGGCGTTCCGTTCGTCGCCGGCACGCAGACGATAAACACGCTGGCCTTCGTCTTCGACGGCGTCAACTTCGGCGCCTCCGACTACGCCTTCGCTGCATACTCCATGGTCGGCGTAGCGGCGGTGACGATCCCGTGCTTGGTTCTTCTCTCGTCGCACGGCGGGTTCGTCGGGATCTGGATCGCCTTGGCCATCTACATGAGCGTCAGAGCATTTGCTAGCACCTGGAGGATGGGAGCAGCCAGGGGGCCGTGGAAGTTTCTTCGCAAATGA More
Protein seq	MARSSSAPESMEADHQLTATVTAAASGDMPVTEQQQQKQMVAVAAPPATENADAAGGGGGDNGDHLPPTATSLLGGARRTGLHLFVLNARSALRLDELGAEVLRIAVPASLALTADPLASLIDTAFIGRIGSVEIAAVGVAIAVFNQVMKVCIYPLVSVTTSFVAEEDAILSKGAAGADDDNDDGHDAKGHGASAAAVADPEKQQVVGVDSAETNGAEVSTAAVRTTDDKKAAAAGVGVGKCRRRFVPSVTSALIVGAFLGLLQAVFLVAAGKPLLRIMGVKPGSPMMIPALRYLVVRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATVTGDLANIALDPILIFTCRFGVVGAAIAHVISQYLITLIMLCKLVRKVDVIPSSLKSLKFRRFLGCGFLLLARVVAVTFCVTLAASLAARHGATAMAAFQICAQVWLASSLLADGLAVAGQALLASAFAKKDHYKVAVTTARVLQLAVVLGVGLTAFLAAGMWFGAGVFTSDAAVISTIHRGVPFVAGTQTINTLAFVFDGVNFGASDYAFAAYSMVGVAAVTIPCLVLLSSHGGFVGIWIALAIYMSVRAFASTWRMGAARGPWKFLRK More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.000000	0.0	0.0

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_01g0162101	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os01g69010	RBH	0.092884	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os01g0919100	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_01g0045040	SBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_01g0044580	SBH	0.0	0.0	0.000000
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_01g0044950	SBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_01g0044410	SBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_01g0043980	RBH	0.439040	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_01G0661600	RBH	0	0.0393155	4.585022
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_01g0043610	RBH	0.0	0.0	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_01G0663200	RBH	0.165121	0	1.48874
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_01g0043950	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_01g0043920	RBH	0.000000	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_01g0044230	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_01g0044190	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_01g0043970	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_01G044350	RBH	0.000000	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_01g0044090	RBH	0.000000	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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