Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0000940 | OGI:04004240 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:1200701-1204086 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcttctgcagatgctatcctgtcttcgcaggtggccgGCgaatgcctgaagatcaacaaggtcagtcagtcacttcttctcactcaaatcaacaaagattcttcacgaatatatatacatatattcttgatcttgcacatgctgctgctgttgctgttctatctaattatgagaaatatattagtccaaatcaacatatatgtagaaaataaaaaacaatatgaaagaattacggaaatacgtactaatgtagttatcatatataatacaatgagaaaagaagaccatagtcaaatgctttattattgagcaaaaatgatggtattatttttatcatcttttagaggaatctatctaaatatagttaatcagcccgtgttagtagaagcatgtatcgtcatgcatcaacatatcatgagattattagttatagctaagtacaccggcgtaatcatacttagcatatcacgagactatcgggtaatggacaattatctttaattgtgctagagaaaaaatatcatacttagcatatcacgagactatcaggtaatggacaattatctttaattgtgctagaaaaaaaaaagtactcccttcgtcccataaaaaaccaacttaggactggatgtgacacatcctagtaaaacgaatctagacatgcatatgttcagatttgttgtactagaatgtgccacactagttctacattcgttttttggaacaaaaggagtaaattacaatccatactatgtattctaaaaaattcttacaaattttcatataatgttatcctttaaccattttcatttacacaatagctaactttacattttaatttggaccaccatattttatccatctccaagtccggtgactcagtaatcacgtcgcacattaactctctctctctctctccattttcttctttcatctgacagttggataaccgatagatctagcaagaaagagcccggatatagcgccttcgctcttcgtcgggtcagctcctgccttccaaagtccctgcaagcccgacatctccgacctcaattgcaaccataacaatagtgtgcatcatgataggggaggagaaaaagacttgtcggttactagaggttaaggctgtgcatgtaaggcaaaggggaggaacgatggtggctcatggagaaagagcggtgatggcggtgcgtagagtgacagttagcagttgcaggtggtatgaggaatttgtcgtcgacacaatcttttaatttttttcctaagtattgatgatacgtgggtcaccagttatataaagaaatagcttttaaaatattagcttgccctaaaataaatgtcaaaacttttgaccgtccgtctttgaaaagtttatgaaaaaattaaaataaattagtcacacgtaaaatattattcatgttttatcatctaataacaataaaaatactaatcataaaaaattttaaatAAaaaaaaagttaaacgccggacgtaaaccgtaataaaaaactacacttaattagggacggatggagcggtaaataaaaatatggagataaggttggagtattgctacttgagataaagaaaaagaaacctctcgttgtctcctccgctccttgcctccttgcgccgccgccaagacgagtggcagctgaacaagggagggccgggcggcgatctccatcgcagcggaggggaggggatcctggtgcgtcttctttctgattcatctctctctctctctctctctctctcccaccccaccgggactggaatttgcgggattgcgttcgtaaaccctactagcttctcttctagatcttctcctcctccttaatttgatagccttaaacctctcttaaataaataattcaagtaataacagtttgtttgttcacccaaaagtttgggggttcaactgaacccccatgtcccaagttggatccgcccctgtgtcgaggtcttggtggtggtgggtaccatttcagaatcaaacctcatttcccatgcataaagtagtatgtatagtgtgtttacttaattttaggagagaaatagaatgctccattcacacatactagcactcattttgtcatcagtaatggagatgtcatcactactactcccatgccatgcaaaataaatatccatattaccgtttcattgcccacattatgatctttaattcggaaataataaggcattgcagcgagaaatccatggcatgggaggtctcttcttgagcttcagccgtccctcacaggaccaacagaagtcatgcctttcagctgctggtggtttcaactatgatgcgcctctccatggtgcctcaagaccaaaatcagtagctaaattgactggggatactgaagcaagtgacaaagcgcttgtcgagcgcggcttcttcgtgaaccgttcacgtgttctggttggctctggcactaccaccttcaaccatgccaaatccgcgcttctctcctggaagtaaagcccaagaactacaaattttgttatgttgttcatctggtctccataaccaagcaaactggtgtatatctaggcatttggcactaggctgggcaaatgtggaacccgacacaccggtgaaggctggaacaaggttctgcatttgttacaaggagctgatcccttgggtcatgttgcccctccagattgcctatgtgaccgatggcaatggaggcaactcctcaggccatggAaaaggctgcgtttttgcttatggtagcggcactctacaaggccatctgctggtacgcctgcctcctaatctcatcaagtaacaatgaaacattgtagtactcactactcagtaatgtaaaatgttcagaatgcagtgcagagttgcaggtgtttttttactgaatgagttggatgatcatattttgatggtttgcaggcaggggaggagaggttctcggtgcagctggacgaagacgatcaggtgtggtacgaggtgatgtccttctcgaagccagcacacatcctgtccagcctctgctacccgtacgtgcagctgaggcagaagcatttcgcgcatcagtcagggcaggcactgctcaggcatgttgccagccgctccagggacacacggtgatcgacttcgtctctgcagatttgatcttttcttcaggagtaatcttcgcatgttgtgagtgagcctgcttgtatgttcctgtatctatgtccgaatctgctcctgagagcattattagtttgtagtttgaatttttgagctcagggtaattatttagcatttgtgctttgttgttaagttttagatcaaattgaggtgttatggtgatgtaaattcagatttccatggtttgttactaaatcaaaaggaagaatgaaagataagc
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| CDS seq | atggcttctgcagatgctatcctgtcttcgcaggtggccgGCgaatgcctgaagatcaacaagcgagaaatccatggcatgggaggtctcttcttgagcttcagccgtccctcacaggaccaacagaagtcatgcctttcagctgctggtggtttcaactatgatgcgcctctccatggtgcctcaagaccaaaatcagtagctaaattgactggggatactgaagcaagtgacaaagcgcttgtcgagcgcggcttcttcgtgaaccgttcacgtgttctggttggctctggcactaccaccttcaaccatgccaaatccgcgcttctctcctggaagcatttggcactaggctgggcaaatgtggaacccgacacaccggtgaaggctggaacaaggttctgcatttgttacaaggagctgatcccttgggtcatgttgcccctccagattgcctatgtgaccgatggcaatggaggcaactcctcaggccatggAaaaggctgcgtttttgcttatggtagcggcactctacaaggccatctgctggcaggggaggagaggttctcggtgcagctggacgaagacgatcaggtgtggtacgaggtgatgtccttctcgaagccagcacacatcctgtccagcctctgctacccgtacgtgcagctgaggcagaagcatttcgcgcatcagtcagggcaggcactgctcaggcatgttgccagccgctccagggacacacggtga
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| Protein seq | MASADAILSSQVAGECLKINKREIHGMGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAKLTGDTEASDKALVERGFFVNRSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIPWVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLQGHLLAGEERFSVQLDEDDQVWYEVMSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR |
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| Function | UPF0548 protein At2g17695 [UniProtKB/Swiss-Prot:Q8GXB1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0000940 | OsLima_04g0000940.02 | Chr04 | 1200701 | 1204086 | + | NAM | ||
| CDS seq | atggcttctgcagatgctatcctgtcttcgcaggtggccgGCgaatgcctgaagatcaacaagcgagaaatccatggcatgggaggtctcttcttgagcttcagccgtccctcacaggaccaacagaagtcatgcctttcagctgctggtggtttcaactatgatgcgcctctccatggtgcctcaagaccaaaatcagtagctaaattgactggggatactgaagcaagtgacaaagcgcttgtcgagcgcggcttcttcgtgaaccgttcacgtgttctggttggctctggcactaccaccttcaaccatgccaaatccgcgcttctctcctggaagcatttggcactaggctgggcaaatgtggaacccgacacaccggtgaaggctggaacaaggttctgcatttgttacaaggagctgatcccttgggtcatgttgcccctccagattgcctatgtgaccgatggcaatggaggcaactcctcaggccatggAaaaggctgcgtttttgcttatggtagcggcactctacaaggccatctgctggcaggggaggagaggttctcggtgcagctggacgaagacgatcaggtgtggtacgaggtgatgtccttctcgaagccagcacacatcctgtccagcctctgctacccgtacgtgcagctgaggcagaagcatttcgcgcatcagtcagggcaggcactgctcaggcatgttgccagccgctccagggacacacggtga
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| Protein seq | MASADAILSSQVAGECLKINKREIHGMGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAKLTGDTEASDKALVERGFFVNRSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIPWVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLQGHLLAGEERFSVQLDEDDQVWYEVMSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0000940 | OsLima_04g0000940.01 | Chr04 | 1200701 | 1204086 | + | NAM | ||
| CDS seq | atggcttctgcagatgctatcctgtcttcgcaggtggccgGCgaatgcctgaagatcaacaagcgagaaatccatggcatgggaggtctcttcttgagcttcagccgtccctcacaggaccaacagaagtcatgcctttcagctgctggtggtttcaactatgatgcgcctctccatggtgcctcaagaccaaaatcagtagctaaattgactggggatactgaagcaagtgacaaagcgcttgtcgagcgcggcttcttcgtgaaccgttcacgtgttctggttggctctggcactaccaccttcaaccatgccaaatccgcgcttctctcctggaagtaa
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| Protein seq | MASADAILSSQVAGECLKINKREIHGMGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAKLTGDTEASDKALVERGFFVNRSRVLVGSGTTTFNHAKSALLSWK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0000940 | OsLima_04g0000940.03 | Chr04 | 1202291 | 1204086 | + | NAM | ||
| CDS seq | atgccaaatccgcgcttctctcctggaagtaaagcccaagaactacaaattttgttatgttgttcatctggtctccataaccaagcaaactggtgtatatctaggcatttggcactaggctgggcaaatgtggaacccgacacaccggtgaaggctggaacaaggttctgcatttgttacaaggagctgatcccttgggtcatgttgcccctccagattgcctatgtgaccgatggcaatggaggcaactcctcaggccatggAaaaggctgcgtttttgcttatggtagcggcactctacaaggccatctgctggcaggggaggagaggttctcggtgcagctggacgaagacgatcaggtgtggtacgaggtgatgtccttctcgaagccagcacacatcctgtccagcctctgctacccgtacgtgcagctgaggcagaagcatttcgcgcatcagtcagggcaggcactgctcaggcatgttgccagccgctccagggacacacggtga
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| Protein seq | MPNPRFSPGSKAQELQILLCCSSGLHNQANWCISRHLALGWANVEPDTPVKAGTRFCICYKELIPWVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLQGHLLAGEERFSVQLDEDDQVWYEVMSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 1202916 | 1203477 | + | OsLima_04g0000940.01,OsLima_04g0000940.03 | OsLima_04g0000940.03,OsLima_04g0000940.02,OsLima_04g0000940.01 | All |
| AF | Chr04 | 1200701 | 1202916 | + | OsLima_04g0000940.01,OsLima_04g0000940.02 | OsLima_04g0000940.02,OsLima_04g0000940.03,OsLima_04g0000940.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.087714 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0119300 | RBH | 1.822986 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g02890 | RBH | 1.043381 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0119300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0000950 | RBH | 1.292004 | 4.385467 | 4.303873 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0000890 | RBH | 0.388303 | 0.0 | 1.157467 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0000970 | RBH | 0.000000 | 1.489288 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0000990 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001050 | RBH | 6.161755 | 7.205251 | 7.948478 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0024900 | SBH | 4.1759405 | 7.8667605 | 11.9489415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001080 | RBH | 0.092469 | 0.180101 | 0.937968 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0022600 | SBH | 3.163181 | 9.999818 | 10.7679115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0000690 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001040 | RBH | 0.130286 | 2.141956 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001120 | SBH | 3.698248 | 10.628968 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0000970 | SBH | 0.334740 | 0.038354 | 7.223348 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001080 | RBH | 0.168666 | 3.201179 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001130 | RBH | 0.181463 | 1.364582 | 1.710335 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001070 | RBH | 0.746305 | 2.787293 | 0.266616 |
