Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0000690 | OGI:03001270 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:479777-481587 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ataaagaaaaagaaacctctcgttgtctcctccgctccttgcctccttgcgccgccgccaagacgagtggcggctgaacaagggagggccgggcggcgatctccatcgcagcggaggggaggggaggggaggggatcctggtgcgtcttctttcttattcatctctctctctctctctctcccaccccaccgggactggaatttgcgggattgcgttcgtaaaccctactagcttctcttctagatcttctcctcctccttaatttgatagccttaaacctctcttaaataaataattcaagtaataacagtttgtttgttcacccaaaagtttgggggttcaactgaacccccatgtcccaagttggatccgcccctgtgtcgaggtcttggtggtggtgggtaccatttcagaatcaaacctcatttcccatgcataaagtagtatgtatagtgtgtttacttaattttaggagagaaatagaatgctccattcacacatactagcactcattttgtcatcagtaatggagatgtcatcactactactccccatgccatgcaaaataaatatccatattaccgtttcattgcccacattatgatctttaattcggaaataataaggcattgcagcgagaaatccatggcatggggaggtctcttcttgagcttcagccgtccctcacaggaccaacagaagtcatgcctttcagctgctggtggtttcaactatgatgcgcctctccatggtgcctcaagaccaaaatcagtagcccaatcgactgcgggagatactgaagcaagtgacaaagcgcttgtcgagcgcggcttcttcgtgaaccattcacgtgttctggttggctctggcactaccaccttcaaccatgccaaatccgcgcttctctcctggaagtaaagcccaagaactacaaattttgttatgttgttcatctggtctccataaccaagcaaactggtgtatatctaggcatttggcactaggctgggcaaatgtggaacccgacacaccggtgaaggctggaacaaggttctgcatttgttacaaggagctgatcccttgggtcatgttgcccctccagattgcctatgtgaccgatggcaatggaggcaactcctcaggccatggaaaaggctgcgtttttgcttatggtagcggcactctagaaggccatctgctggtacgcctgcctcctaatctcatcaagtaacaatgaaacattgtagtactcactactcagtaatgtaaaatgttcagaatgcagtgcagagttgcaggtgtttttttactgaatgagttggatgatcatattttgatggtttgcaggcaggggaggagaggttctcggtgcagctggacgaagacgatcaggtgtggtacgaggtgatgtccttctcgaagccagcacacatcctgtccagcctctgctacccgtacgtgcagctgaggcagaagcatttcgcgcatcagtcagggcaggcactgctcaggcatgttgccagccgctccagggacacacggtgatcgacttcgtctctgcagatttgatcttttcttcaggagtagtcttcgcatgttgtgagtgagcctgcttgtatgttcctgtatctatgtccgaatctgctcatgagagcattattagtttgtagtttgaatttttgagctcagggtaattatttagcatttgtgctttgttgttaagttttagatcaaattgaggtgttatggtgatgtaaattcagatttccatggtttgttactaaatcaaaaggaagaatgaaagataagc
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| CDS seq | atggcatggggaggtctcttcttgagcttcagccgtccctcacaggaccaacagaagtcatgcctttcagctgctggtggtttcaactatgatgcgcctctccatggtgcctcaagaccaaaatcagtagcccaatcgactgcgggagatactgaagcaagtgacaaagcgcttgtcgagcgcggcttcttcgtgaaccattcacgtgttctggttggctctggcactaccaccttcaaccatgccaaatccgcgcttctctcctggaagcatttggcactaggctgggcaaatgtggaacccgacacaccggtgaaggctggaacaaggttctgcatttgttacaaggagctgatcccttgggtcatgttgcccctccagattgcctatgtgaccgatggcaatggaggcaactcctcaggccatggaaaaggctgcgtttttgcttatggtagcggcactctagaaggccatctgctggcaggggaggagaggttctcggtgcagctggacgaagacgatcaggtgtggtacgaggtgatgtccttctcgaagccagcacacatcctgtccagcctctgctacccgtacgtgcagctgaggcagaagcatttcgcgcatcagtcagggcaggcactgctcaggcatgttgccagccgctccagggacacacggtga
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| Protein seq | MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAQSTAGDTEASDKALVERGFFVNHSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIPWVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLEGHLLAGEERFSVQLDEDDQVWYEVMSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR |
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| Function | UPF0548 protein At2g17695 [UniProtKB/Swiss-Prot:Q8GXB1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0000690 | OsLima_03g0000690.01 | Chr03 | 479777 | 481587 | + | NAM | ||
| CDS seq | atggcatggggaggtctcttcttgagcttcagccgtccctcacaggaccaacagaagtcatgcctttcagctgctggtggtttcaactatgatgcgcctctccatggtgcctcaagaccaaaatcagtagcccaatcgactgcgggagatactgaagcaagtgacaaagcgcttgtcgagcgcggcttcttcgtgaaccattcacgtgttctggttggctctggcactaccaccttcaaccatgccaaatccgcgcttctctcctggaagcatttggcactaggctgggcaaatgtggaacccgacacaccggtgaaggctggaacaaggttctgcatttgttacaaggagctgatcccttgggtcatgttgcccctccagattgcctatgtgaccgatggcaatggaggcaactcctcaggccatggaaaaggctgcgtttttgcttatggtagcggcactctagaaggccatctgctggcaggggaggagaggttctcggtgcagctggacgaagacgatcaggtgtggtacgaggtgatgtccttctcgaagccagcacacatcctgtccagcctctgctacccgtacgtgcagctgaggcagaagcatttcgcgcatcagtcagggcaggcactgctcaggcatgttgccagccgctccagggacacacggtga
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| Protein seq | MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAQSTAGDTEASDKALVERGFFVNHSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIPWVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLEGHLLAGEERFSVQLDEDDQVWYEVMSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0000690 | OsLima_03g0000690.02 | Chr03 | 479783 | 481587 | + | NAM | ||
| CDS seq | atggcatggggaggtctcttcttgagcttcagccgtccctcacaggaccaacagaagtcatgcctttcagctgctggtggtttcaactatgatgcgcctctccatggtgcctcaagaccaaaatcagtagcccaatcgactgcgggagatactgaagcaagtgacaaagcgcttgtcgagcgcggcttcttcgtgaaccattcacgtgttctggttggctctggcactaccaccttcaaccatgccaaatccgcgcttctctcctggaagcatttggcactaggctgggcaaatgtggaacccgacacaccggtgaaggctggaacaaggttctgcatttgttacaaggagctgatcccttgggtcatgttgcccctccagattgcctatgtgaccgatggcaatggaggcaactcctcaggccatggaaaaggctgcgtttttgcttatggtagcggcactctagaaggccatctgctggcaggggaggagaggttctcggtgcagctggacgaagacgatcaggtgtggtacgaggtgatgtccttctcgaagccagcacacatcctgtccagcctctgctacccgtacgtgcagctgaggcagaagcatttcgcgcatcagtcagggcaggcactgctcaggcatgttgccagccgctccagggacacacggtga
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| Protein seq | MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAQSTAGDTEASDKALVERGFFVNHSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIPWVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLEGHLLAGEERFSVQLDEDDQVWYEVMSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 479916 | 480413 | + | OsLima_03g0000690.02 | OsLima_03g0000690.02,OsLima_03g0000690.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0107600 | RBH | 1.241436 | 1.070704 | 3.487333 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g01730 | RBH | 0.774505 | 0.653850 | 0.883550 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0107600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0000680 | RBH | 0.767483 | 9.649714 | 6.032419 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0000660 | RBH | 0.299183 | 1.351013 | 3.516445 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0000680 | RBH | 0.921069 | 0.000000 | 4.850909 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0000670 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0000660 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0024900 | SBH | 4.1759405 | 7.8667605 | 11.9489415 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0000670 | RBH | 0.156915 | 0.198266 | 1.614223 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0022600 | SBH | 3.163181 | 9.999818 | 10.7679115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0000940 | RBH | 0.000000 | 0.087714 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0000710 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0000660 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0000670 | RBH | 0.000000 | 0.169141 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0000690 | RBH | 0.082970 | 2.627851 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G000670 | RBH | 0.000000 | 0.0 | 0.501506 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0000590 | RBH | 0.0 | 0.000000 | 0.000000 |
