Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsKYG_03g0000710 | OGI:03001270 | 14/16 | KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | Chr03:486295-488299 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATAAAGAAAAAGAAACCTCTCGTTGTCTCCTCCGCTCCTTGCCTCCTTGCGCCGCCGCCAAGACGAGTGGCGGCTGAACAAGGGAGGGCCGGGCGGCGATCTCCATCGCAGCGGAGGGGAGGGGAGGGGAGGGGATCCTGGTGCGTCTTCTTTCTTATTCATCTCTCTCTCTCTCTCTCTCCCACCCCACCGGGACTGGAATTTGCGGGATTGCGTTCGTAAACCCTACTAGCTTCTCTTCTAGATCTTCTCCTCCTCCTTAATTTGATAGCCTTAAACCTCTCTTAAATAAATAATTCAAGTAATAACAGTTTGTTTGTTCACCCAAAAGTTTGGGGGTTCAACTGAACCCCCATGTCCCAAGTTGGATCCGCCCCTGTGTCGAGGTCTTGGTGGTGGTGGGTACCATTTCAGAATCAAACCTCATTTCCCATGCATAAAGTAGTATGTATAGTGTGTTTACTTAATTTTAGGAGAGAAATAGAATGCTCCATTCACACATACTAGCACTCATTTTGTCATCAGTAATGGAGATGTCATCACTACTACTCCCCATGCCATGCAAAATAAATATCCATATTACCGTTTCATTGCCCACATTATGATCTTTAATTCGGAAATAATAAGGCATTGCAGCGAGAAATCCATGGCATGGGGAGGTCTCTTCTTGAGCTTCAGCCGTCCCTCACAGGACCAACAGAAGTCATGCCTTTCAGCTGCTGGTGGTTTCAACTATGATGCGCCTCTCCATGGTGCCTCAAGACCAAAATCAGTAGCCCAATCGACTGCGGGAGATACTGAAGCAAGTGACAAAGCGCTTGTCGAGCGCGGCTTCTTCGTGAACCATTCACGTGTTCTGGTTGGCTCTGGCACTACCACCTTCAACCATGCCAAATCCGCGCTTCTCTCCTGGAAGTAAAGCCCAAGAACTACAAATTTTGTTATGTTGTTCATCTGGTCTCCATAACCAAGCAAACTGGTGTATATCTAGGCATTTGGCACTAGGCTGGGCAAATGTGGAACCCGACACACCGGTGAAGGCTGGAACAAGGTTCTGCATTTGTTACAAGGAGCTGATCCCTTGGGTCATGTTGCCCCTCCAGATTGCCTATGTGACCGATGGCAATGGAGGCAACTCCTCAGGCCATGGAAAAGGCTGCGTTTTTGCTTATGGTAGCGGCACTCTAGAAGGCCATCTGCTGGTACGCCTGCCTCCTAATCTCATCAAGTAACAATGAAACATTGTAGTACTCACTACTCAGTAATGTAAAATGTTCAGAATGCAGTGCAGAGTTGCAGGTGTTTTTTTACTGAATGAGTTGGATGATCATATTTTGATGGTTTGCAGGCAGGGGAGGAGAGGTTCTCGGTGCAGCTGGACGAAGACGATCAGGTGTGGTACGAGGTGATGTCCTTCTCGAAGCCAGCACACATCCTGTCCAGCCTCTGCTACCCGTACGTGCAGCTGAGGCAGAAGCATTTCGCGCATCAGTCAGGGCAGGCACTGCTCAGGCATGTTGCCAGCCGCTCCAGGGACACACGGTGATCGACTTCGTCTCTGCAGATTTGATCTTTTCTTCAGGAGTAGTCTTCGCATGTTGTGAGTGAGCCTGCTTGTATGTTCCTGTATCTATGTCCGAATCTGCTCATGAGAGCATTATTAGTTTGTAGTTTGAATTTTTGAGCTCAGGGTAATTATTTAGCATTTGTGCTTTGTTGTTAAGTTTTAGATCAAATTGAGGTGTTATGGTGATGTAAATTCAGATTTCCATGGTTTGTTACTAAATCAAAAGGAAGAATGAAAGATAAGCACAAGAGGAACCCCACAGTTCCACGGAACAGGTAGAAGAGACGTCTTGCACCAGGCAAACGCCCCTTGTTTATAGTGATGAGAGTATGGATTATCTGTTTGTCCCCTTTACCATGGTAGTAGAGTACTCAATGGATTAGCAACTTTTTCCATGTCTGTCACTGTCACTAGAAGAAGCTTTGCTAGTGCAAGTGT
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CDS seq | ATGGCATGGGGAGGTCTCTTCTTGAGCTTCAGCCGTCCCTCACAGGACCAACAGAAGTCATGCCTTTCAGCTGCTGGTGGTTTCAACTATGATGCGCCTCTCCATGGTGCCTCAAGACCAAAATCAGTAGCCCAATCGACTGCGGGAGATACTGAAGCAAGTGACAAAGCGCTTGTCGAGCGCGGCTTCTTCGTGAACCATTCACGTGTTCTGGTTGGCTCTGGCACTACCACCTTCAACCATGCCAAATCCGCGCTTCTCTCCTGGAAGCATTTGGCACTAGGCTGGGCAAATGTGGAACCCGACACACCGGTGAAGGCTGGAACAAGGTTCTGCATTTGTTACAAGGAGCTGATCCCTTGGGTCATGTTGCCCCTCCAGATTGCCTATGTGACCGATGGCAATGGAGGCAACTCCTCAGGCCATGGAAAAGGCTGCGTTTTTGCTTATGGTAGCGGCACTCTAGAAGGCCATCTGCTGGCAGGGGAGGAGAGGTTCTCGGTGCAGCTGGACGAAGACGATCAGGTGTGGTACGAGGTGATGTCCTTCTCGAAGCCAGCACACATCCTGTCCAGCCTCTGCTACCCGTACGTGCAGCTGAGGCAGAAGCATTTCGCGCATCAGTCAGGGCAGGCACTGCTCAGGCATGTTGCCAGCCGCTCCAGGGACACACGGTGA
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Protein seq | MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAQSTAGDTEASDKALVERGFFVNHSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIPWVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLEGHLLAGEERFSVQLDEDDQVWYEVMSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR |
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Function | UPF0548 protein At2g17695 [UniProtKB/Swiss-Prot:Q8GXB1] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKYG_03g0000710 | OsKYG_03g0000710.01 | Chr03 | 486295 | 488299 | + | NAM | ||
CDS seq | ATGGCATGGGGAGGTCTCTTCTTGAGCTTCAGCCGTCCCTCACAGGACCAACAGAAGTCATGCCTTTCAGCTGCTGGTGGTTTCAACTATGATGCGCCTCTCCATGGTGCCTCAAGACCAAAATCAGTAGCCCAATCGACTGCGGGAGATACTGAAGCAAGTGACAAAGCGCTTGTCGAGCGCGGCTTCTTCGTGAACCATTCACGTGTTCTGGTTGGCTCTGGCACTACCACCTTCAACCATGCCAAATCCGCGCTTCTCTCCTGGAAGCATTTGGCACTAGGCTGGGCAAATGTGGAACCCGACACACCGGTGAAGGCTGGAACAAGGTTCTGCATTTGTTACAAGGAGCTGATCCCTTGGGTCATGTTGCCCCTCCAGATTGCCTATGTGACCGATGGCAATGGAGGCAACTCCTCAGGCCATGGAAAAGGCTGCGTTTTTGCTTATGGTAGCGGCACTCTAGAAGGCCATCTGCTGGCAGGGGAGGAGAGGTTCTCGGTGCAGCTGGACGAAGACGATCAGGTGTGGTACGAGGTGATGTCCTTCTCGAAGCCAGCACACATCCTGTCCAGCCTCTGCTACCCGTACGTGCAGCTGAGGCAGAAGCATTTCGCGCATCAGTCAGGGCAGGCACTGCTCAGGCATGTTGCCAGCCGCTCCAGGGACACACGGTGA
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Protein seq | MAWGGLFLSFSRPSQDQQKSCLSAAGGFNYDAPLHGASRPKSVAQSTAGDTEASDKALVERGFFVNHSRVLVGSGTTTFNHAKSALLSWKHLALGWANVEPDTPVKAGTRFCICYKELIPWVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLEGHLLAGEERFSVQLDEDDQVWYEVMSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsKYG_03g0000710 | OsKYG_03g0000710.02 | Chr03 | 486301 | 488105 | + | NAM | ||
CDS seq | ATGCCAAATCCGCGCTTCTCTCCTGGAAGTAAAGCCCAAGAACTACAAATTTTGTTATGTTGTTCATCTGGTCTCCATAACCAAGCAAACTGGTGTATATCTAGGCATTTGGCACTAGGCTGGGCAAATGTGGAACCCGACACACCGGTGAAGGCTGGAACAAGGTTCTGCATTTGTTACAAGGAGCTGATCCCTTGGGTCATGTTGCCCCTCCAGATTGCCTATGTGACCGATGGCAATGGAGGCAACTCCTCAGGCCATGGAAAAGGCTGCGTTTTTGCTTATGGTAGCGGCACTCTAGAAGGCCATCTGCTGGCAGGGGAGGAGAGGTTCTCGGTGCAGCTGGACGAAGACGATCAGGTGTGGTACGAGGTGATGTCCTTCTCGAAGCCAGCACACATCCTGTCCAGCCTCTGCTACCCGTACGTGCAGCTGAGGCAGAAGCATTTCGCGCATCAGTCAGGGCAGGCACTGCTCAGGCATGTTGCCAGCCGCTCCAGGGACACACGGTGA
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Protein seq | MPNPRFSPGSKAQELQILLCCSSGLHNQANWCISRHLALGWANVEPDTPVKAGTRFCICYKELIPWVMLPLQIAYVTDGNGGNSSGHGKGCVFAYGSGTLEGHLLAGEERFSVQLDEDDQVWYEVMSFSKPAHILSSLCYPYVQLRQKHFAHQSGQALLRHVASRSRDTR |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
RI | Chr03 | 486931 | 487496 | + | OsKYG_03g0000710.02 | OsKYG_03g0000710.02,OsKYG_03g0000710.01 | All |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.000000 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0107600 | RBH | 1.241436 | 1.070704 | 3.487333 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g01730 | RBH | 0.774505 | 0.653850 | 0.883550 |
Nipponbare | IRGSP 1.0 | RAP-db | Os03g0107600 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0000680 | RBH | 0.767483 | 9.649714 | 6.032419 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0000660 | RBH | 0.299183 | 1.351013 | 3.516445 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0000680 | RBH | 0.921069 | 0.000000 | 4.850909 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0000670 | RBH | 0.000000 | 0.000000 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0000660 | RBH | 0.000000 | 0.0 | 0.000000 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0024900 | SBH | 4.1759405 | 7.8667605 | 11.9489415 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0000670 | RBH | 0.156915 | 0.198266 | 1.614223 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0022600 | SBH | 3.163181 | 9.999818 | 10.7679115 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0000690 | RBH | 0.000000 | 0.000000 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001040 | RBH | 0.130286 | 2.141956 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0000660 | RBH | 0.000000 | 0.000000 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0000670 | RBH | 0.000000 | 0.169141 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0000690 | RBH | 0.082970 | 2.627851 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G000670 | RBH | 0.000000 | 0.0 | 0.501506 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0000590 | RBH | 0.0 | 0.000000 | 0.000000 |