Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0036240 | OGI:03089690 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:35173405-35175154 | ||||||||
| Gene Symbol | RPS29, OsRPS29 | ||||||||||
| DNA seq | gcatataatcatcttctattacagcactagaacatgctcgataatatgagaattaataccagaacatgtattgtccatcagaccataactcactttcaaatatcaataatctgttacatatcataagacgacaattgtatcaaaagggataatactcgacaaggcttttacacttccataaaaattttcccgatctaagctcccattccacttgagctcccaactttcaacggtactgcaaatgaataagatgcactttgagaggtccagggattaaaataacagcaaaaagctagataacacaaacatctgcacaaaaaaataactaaataaccgcttattcattcaagtattccagaacaataagataaaacaatgtagaaaattctaacgtcacaattctggcataaaatcgggtgcattacatctgcacgataaaataagtaaataaccacattcattcaagtattccataacaataagatgagacgatgtggaaaattctaacatctccacaattctagcataaaatcgggtgcattaatattttaagcaagaggtagcctttgaattgtggttagcaacttttttttaacaaaaggaaactaccctgctttaattggaagcaacatatcaaaaaggaaaaacataaaagaagggaacccatatgaaagatgatagttgtagtctattgattagcaatagatcctcctattattcgttgaactacagagagatgtttgcgatacgtttgaagtgttgacatttagaaggcagctacaagtgatagctaatgagctcacatggggcacatggcacatactcatactatgttggataagtggtgaagataacaaataagacaggttttcaaaattaactaatattgttatagtattggcatctgcaaaagataatctcagaaacaaaagcagtgtgtgcatcaattccaattctaactggccatcttatgatctgtaattattcataccagctcgaccagaacagaactgacaaaatgagaatgggaacatgaggcgacaacggataacacaatacacaagctgtcaagcaggaaataaaacgtggaggaggaacaacgcggcacagtttgtgacattatcgctacgtcgttaggaactaccacaacaccgcacacgggatgcaacactattgcaccaaacaatttcaccatcaaaaagtaaaactgctaacttgagcctgcatattacaggaagcaactagcaacctaaaaaaatatgaagagtataccttgatgaagccaatgtccttggcgttgctgcggaagcactgcctgcagcacatgagcccgtacttccggatcaagccatgcgggttgccgcaaacacggctgcaacaacaaatccacaccacaaatccgtaagcactcgtcaagcaatccaagaaaaagggcgcacgaacctttctaccggaagcaagagataaactactacagtataaaatctagcaacatgcgaattcacgccacaaaatctgacaaatctgacccgatgctacgcacacagatagaagaaatactcctatggttcgtcaccgaactgaatgaaaacacggcgcgggggatcgcgagtagagtagagaggattaccaaaccctggatccggggccgtagttcttggggtgcgagttccacacgttggagtgtcccatggcggcggcggcggaggtcgtgagttgtaaaccctagaatgaacgaaatgagcgcgtt
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| CDS seq | atgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatccagggtttgccgtgtttgcggcaacccgcatggcttgatccggaagtacgggctcatgtgctgcaggcagtgcttccgcagcaacgccaaggacattggcttcatcaaggtatactcttcatatttttttaggttgctagttgcttcctgtaatatgcaggctcaagttagcagttttactttttga |
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| Protein seq | MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKVYSSYFFRLLVASCNMQAQVSSFTF |
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| Function | 40S ribosomal protein S29 [UniProtKB/Swiss-Prot:Q5I7K3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0036240 | OsLima_03g0036240.01 | Chr03 | 35174106 | 35175154 | - | NAM | ||
| CDS seq | atgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatccagggtttgccgtgtttgcggcaacccgcatggcttgatccggaagtacgggctcatgtgctgcaggcagtgcttccgcagcaacgccaaggacattggcttcatcaaggtatactcttcatatttttttaggttgctagttgcttcctgtaatatgcaggctcaagttagcagttttactttttga
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| Protein seq | MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKVYSSYFFRLLVASCNMQAQVSSFTF |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0036240 | OsLima_03g0036240.02 | Chr03 | 35173405 | 35175151 | - | IsoSeq | ||
| CDS seq | gctcatttcgttcattctagggtttacaactcacgacctccgccgccgccgccatgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatccagggtttgccgtgtttgcggcaacccgcatg |
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| Protein seq | AHFVHSRVYNSRPPPPPPWDTPTCGTRTPRTTAPDPGFAVFAATRM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.263124 | 1.180586 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0773150 | RBH | 20.111551 | 20.659859 | 31.288784 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56241 | RBH | 11.758745 | 12.013799 | 6.963650 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0773150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036400 | RBH | 11.337832 | 112.891159 | 18.680325 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036070 | RBH | 0.796898 | 41.849422 | 16.969738 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036150 | RBH | 16.055992 | 81.958855 | 38.676056 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036440 | SBH | 1.884974 | 7.177837 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035960 | RBH | 68.854309 | 160.628372 | 109.776123 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0377500 | SBH | 150.1438065 | 240.588974 | 177.7269975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035760 | RBH | 4.205580 | 13.281549 | 9.663656 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0395800 | SBH | 159.40847 | 158.8033825 | 344.046158 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021460 | SBH | 1.211345 | 1.355825 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036260 | RBH | 1.270347 | 9.084092 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035910 | RBH | 36.306499 | 58.991169 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0036000 | RBH | 1.531556 | 0.437933 | 4.052024 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035950 | RBH | 1.621222 | 71.949318 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035760 | RBH | 4.334978 | 67.925934 | 17.975584 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0035540 | SBH | 8.907204 | 69.611107 | 54.751011 |
