Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0021460 | OGI:11071660 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:27213281-27214996 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tctccagctcctcgccgccgcatccgatccgacaaggaagggaagcgagagctcgaggtcaccctcaccggcggcgagcgatgggccactccaacgtgtggaactcccAccccaagaactacGggcccggctcccgcgtctggtacgttgttctcgcctcctgtgtccgcatggtttgtttgtgttaggttcttgattttgtcttgtgaagggaatatcatgtgtggtgatggtcggtagtgtgcttgttctgcgtggataggctgatttagatgctgtggtaggtgttaatctgtatgtttatgttcttcctgtgatatgaactgtggtttgattgtcccaaatcgtcccatactgtggttgctagtgtttggtctgtgtggatgggctgattcagatgttctggttttgtatccagttggtaattactaattagagttgcaaatttggattagacgctgtagtaagagttgatttatctgtttctgtgttcctgtgatgtgaggtttggttgtcctaattggggaaaaagaagttgtatcttttgtgggtttgctttgaattgataatcagatgtagcgagtttgctgttgtcagacatgtaccctcatgataggatagtgagcggtgttgtttgctaaaatggtatacactagtgaatctgttTAtacagttttatttggacgagaactgcatgatttcaaagataacatgagatgaaatgccaaatggaactacatgttaggaaataactgcattatttgaaagatatcgttgcttaactatcaagttaaattatgtttgaatgatgtttgtgggctgaaaagtaatgtgacatttgcgctgaattgttttggtaacagcaagcttgttcatttttggcagccGggtctgcgggaaccctcatgggctgatcaggaagtatgggctcatgtgctgcaggcagtgcttccgcagcaacgccaaggatattggcttcatcaaggtatatggtccgctcattgtgctccttgtgttgtgcacttgttccacaagTttttgagtacttcatttgatatatggatcactttaaatgtgcaacgtttaacttatttccttttcacaccaacctgataaatatatatattctttgtaattcttacaatcattgcactgatgtaactgtttgggtttccatatatcaatatgaatcaatcaacttacatatagtctagaaatttttttaaatgaaaatgctctaaatttcttgtcttctccttgcagtaccgctgaaggccattttgcctcgccgttgagcctgagaactccgcctgaaccagagaaatggatcttttagtataatactacatttatgtggtttagctttttgttcggagtaccgtcctattaaacatgtttaagttttgatgggaaccatgaggttgttgaactaactttgtgatcaaatattgaagtactctcttatgtttgaggtcttgtgtatttgatactactgtgatggctcaaagttactggtttacagcattccagcttgtttcagttttttttatgattccaatgttcattactgtagatatacaacataaaaaaaagttcagaatgcagaataaatggaaattggactttgatcaagttaacatgtgatctattctattttctttcaaaagtacttcaattgcactgaaatgtaaaattctgagtaaacctatggctgac
More
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| CDS seq | atgggccactccaacgtgtggaactcccAccccaagaactacGggcccggctcccgcgtctgccGggtctgcgggaaccctcatgggctgatcaggaagtatgggctcatgtgctgcaggcagtgcttccgcagcaacgccaaggatattggcttcatcaagtaccgctga |
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| Protein seq | MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR |
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| Function | 40S ribosomal protein S29 [UniProtKB/Swiss-Prot:Q5I7K3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0021460 | OsLima_11g0021460.01 | Chr11 | 27213281 | 27214996 | + | NAM | ||
| CDS seq | atgggccactccaacgtgtggaactcccAccccaagaactacGggcccggctcccgcgtctgccGggtctgcgggaaccctcatgggctgatcaggaagtatgggctcatgtgctgcaggcagtgcttccgcagcaacgccaaggatattggcttcatcaagtaccgctga |
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| Protein seq | MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKYR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.211345 | 1.355825 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0634500 | RBH | 16.212553 | 18.790304 | 31.889563 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g41610 | RBH | 9.671114 | 11.990258 | 8.286817 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0634500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021270 | RBH | 5.441246 | 61.672733 | 24.507360 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021220 | RBH | 1.050655 | 21.482222 | 12.041633 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021130 | RBH | 9.252883 | 88.991890 | 26.090368 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020580 | RBH | 0.564393 | 6.132456 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021130 | RBH | 48.490520 | 169.651642 | 45.682598 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0377500 | RBH | 150.1438065 | 240.588974 | 177.7269975 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021590 | RBH | 2.532498 | 11.749231 | 5.477747 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0395800 | RBH | 159.40847 | 158.8033825 | 344.046158 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0014450 | RBH | 0.564554 | 3.099313 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021610 | RBH | 4.500765 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021220 | RBH | 23.487103 | 113.614632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0020840 | RBH | 5.189041 | 0.0 | 5.537289 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0020980 | RBH | 2.107976 | 71.063469 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G020930 | RBH | 4.019613 | 76.502037 | 18.708311 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021500 | RBH | 6.890395 | 93.797638 | 46.604500 |
