Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_03g0035540 | OGI:03089690 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr03:34462169-34470897 | ||||||||
| Gene Symbol | RPS29, OsRPS29 | ||||||||||
| DNA seq | acttgatgtagcttgttatataggttgtgattagggcctgaatttatgtctagagtatgtccttgaatcgctgttacatattcagcgaacattgaggaatctggccgaagggagaagcacaagattacctatgggtatggcccaaaattaattgggagaagcccaactgagcgatgtactggtcaggtttccagcctaaccaaacccatcagaaaattctggcgtcgccttgaagaaacaaacgctgctcgcatactatcataaacaacacagtatgccgataaacttcagatatcaaagcaaaactgagaacagttcagcgcaattgatcagaagcatacctgtatacacggcagtcatcagaagctttactgtaaccaagagattgtgtgagctttttgtacagggacaccacaatttacacgacatacatgtaacatgttagtacagctcttactatatatcttacacagcagaatgcgtccctattgactgcaaagaacagcaagtccgcagctgttggatttcccacaaacagcttgacttggacaatgcaaatcctcctctacagcgagatgcatccttggtagtacttcactagccaacatagcaagcgacgagagcaatgaacggcgcccagaattcacagttctacatgacggatgggattgagtcattcttatctgccatgaagaatgacaggtttcgaaacgcatccaggctattcaccatcatgcgattccaactattctgactgtctcctaagagtaagtcctcagcttggtatctcacggatggtatctctaagtccagtggtccaagtgaatcagcctatccaaagagaagacatagtaagttatgatcagtgttgatagattatactagaaactaaaacaggcagggataggatatcttacccaatataagtcagctagagattgatcctttaacccagaatcacttttacttcgaggtggagaattggcacaaagtgcctccatatctttggcatcatccatacaaggattatcagcaacctttgctcctgctaagtcctgcaaacatgaaataaatcatagattaacaacattgatgtataaaaagtcgttttattctacaagagaccaagagatggaaacaaacctgaagaaagccttgaaacccttgtgaggttgaaggaagaacaacactatcactaccaggagagctgctagctgaagtgtttgaactttcttgcttcctagatgctgccaagttaaaactgaactcatcacaggtttcttcagcaccccagatggtcgaatgggatgcaagggctggctgctctactgttttatgacgagaagcgtgaagagcaacagcagcatcaaatgaatcatagctgcagggattctcaagaaacaatgtgtttttggcaatagctgtccctggacaatctgtattagtacctatggatgcttctgttagtaagtatccaacactgatatcagtaagggtatctgcccactctccttcagatattatagcacaatccatccctagattagcctgaagtataacagaagcaattagaagatagcagattaatgttcacttgacaaaaatatggatggaactgaagttggacctctaaaacttggtttgtggaatctttttcttgcttctgcctgctaaaccatgaggcgggaaaatcactgtgctgctcttgccccttagcgctcttgcctgtactaaatgtcatagcaagaaataatgccggccgatcttttgaattacaaaggtgttcctcaggagcacaactattgagaaaagtaccatccttctgcacacaagcgtctgagggagatttggcatggatgtcttcaggcatcatgcaattcttaaaatgagttgaagatattccacttcctccttcaagctcagcaagggaaaaccaaccataccttattggcgacaacagttagcacttgttatggctttcaacaaatggtcttatcacaatattatagtttgttacccaggaattcatccataccttaatcgaaaaacaggcgggctattcacagaaagaaaaacatcagccaccacaactgtatctcttgtggtccatctctgataggtagctaaatcttctcggtgagcacaatatggaaaaagcaaaagctctccagacgcaatgtttgagctgccccacttgcggttaagatgttctagtacagaagatatttttttcctaccgctaactgtgagttccagatgtggattatgttcatcctgttgaaaaaagataggactatcaatatctcaaacaccatcgaaaattcataaggtaaatagtgctagtaaggttatttgcactccacattccattagtcccatttatcctgagaaattttatcaaccacagtgatttgagtgtccgagccaatagtaaatcagtaatagctgttgtgctaacacagctgctgcaggaaacacatgattcataatttcatattgcagcttggtggcaacaaacaggcatatttaccttttccaatgcctttcgtgtggcttcattgattggaaataactgcaatttcagctttgcaggtgcttgttgatctgcttcattcatacgatttgtgcctggatctgccagtgcaggataaaacatcaagacaataggaaccagtaccagccatttctagtcagagagcagtgataagaaagaataccatcaacggtacaaacattgtttgatgagggagataatgtccttgcatcaacattcactgtgttgcgctcaagctcttcagctgcatcagcgactaaagaaacaccagccatggcatctctctcccattttttatatgcagtagatgcaatgccaccacctaaaatacaagtccactgctctcaaaactattgtaaggaaaattcgacactttaagctcacataataaaatttattggattatcgacatttagctaagacatacagactgcatatcgcataaaatgaaaaaagtaaagggtgtgccacatgaaaccaaaaaaaaaaaaaaggcagtgtcacctgctctccttttctgtttcacagtaattgtggcagagaggtcccatttagttgaacctgacttgttattggaatttggttctgcacccctcttgaaaactgccccttttgaagatgctactttgctaccatttgagacatccacaggtaggagttttactgaggaagattcatttccagcagtcctgttcagaattggagatgaagaagaaaggcactcatcccctcgtggacacttttttctggttttattcctgtcctttagcagttgatttccctataaagttggatatatcacatgagaaaaaaaaaacaaaaatgaacatttttacagttacaaaggagtgggaaagtaacaaatggtcatgcaccaatgcttctacgaatgttttgaatctccgaggcttcagatgcagttttgatgcactgcagctaaatttttcaagcagagaccacctgcatagaacgaattcagtatcggagagttttccatgcaatgtaaaagaaacaacatcagatcaaatcaaaagcaatgacaataaacaacagacagtatctttctagtgcatagactagaatgcaatctgcatggaaataaaaaatatatctttcatcagaagaatattctgaaccacgaagtatgccaccaaaatttcagagaccattttatgggacaggtctgaatctaaaatagaagcagtaaatatgttaaggtgtctatacagtattggtatgaaggccccatagttctaacctactaggcattatagcagtaaattatagacgtgtcctctgtaaattaaaaggatcacgtacctactacagtcctaggttcctagcctactaggaaaaggatatatatcatgaagatagctcagcAaaattttgaggccaaacactaccctttgcaatcatgttatataaataatatcaagcagtagggaccacatctaatcagattaatttgcatgcagacattcattccgttaccagcggagcatagcagcaacagtgtcctttgaattttttgcatcaagtgagaactcaggaccaagaagtttcttcatgcgtcgaacaagacgatagtaataatgtctgacctatattgcaaaaaataaaaggcaatgaattatcagtccaacagaagaaattcaggtgttctctaattgatgcaaatattatctataactttatatatgatgaacatacttatgctagctatgtgaggattgagagataattaagtgtctatgtatcagagagaaaactgtactgatttattggcagctatcacttaagcatgtccagtgcccacatagtcaacagaacatgcttagatgatcaggaacgagcagtgcaggaaaattcctctctaaatgttccagcctccaggtgcagaatcttaggtggtaagctgctgaggagtgtgctttatggccaaagatggacaaaatagggggataatatcgagatacatctaaagcctgaataaaacttagtgccaattctaaacatcatgttttggcattgagagcaataggtcacccggagtgcctactgatgaacaaaacttctttcaaccagtggctgtgtagcagccggttgaaaatccgagagtctcaagtctcaacgccggagtttcgatacggtagcaacacttgtggcttcgacgatctggaaggagcagaatgccagagtcttcaaccaaagttttagggcatggacagatgtggcgagggaaatggctcaagaggcaacgctttggcgtcaagcgaattcagcaatccccgccctactcttccgagagaatcatggtagccaaaatgtgctgcgagaattaggcctttgattttgtaatgctttccagtccctgtcccctgctgctctttctttaaatgtaaataacctttatttctcttaatggaaaaaattcgcctctggcgtattcccgaaaaaaaaaacatcatgttctgaagtttgagtttcccataacagatcggctgcaagtatatcaatagaaacttgaaaaaaagatgaaatcagctttagtaaagaagagggatcaattgcaagtgaggaagataaatcggctccaagtgaaagtacacaatctggatgggaatctaaaaggagggatgttgtaatccatccaccctgcagccttctccagttgaaccacgaaaatcagaaagaatgtaggtatatgctacaggatgctggtgctatgtcaagcaacaacaacgaccatggttgaaaatgagatttgcccatgacagttacttctgaTtttttttttctcaaagcaaaatagatttattcaattctaattggcatcccatcatagtgaaagttatttagcacattgcatgtagaactaaaatttacagcctaacttgaatcttcctttcattcaaatttcctaattggttaaataaagaacgtcaaatatcataaaaaaatactaaatttatgatctaatgtgtatctaccactgcttcaacgtcctaacgtatcaatacagaatgttaaatatcatatgaacatcttacacctcttggccgaaaatggtgtacctgatccttgtttttgctctggacacggagcgtgatcttctcaaaattctgacacaaaggaaaagttattgctgcatctatcgatcagcgcacacattgatcagattgcaagaaacagcgtagcatcataacatcgatgcgtcttacttttccttccaggcgcagcgcattgaaaaagctctgttcctcttggcgtgtccatgccgcccattgccgagtcggcttctcggcagaggcaggcctcacttggggcatagagctcagctgaacccccaatttttcttgatcctggaaacaaattgcttcgattagtactgcatcacgcatgaaatcgacaggaaactggatggattaattggattgaaacaaacaacaatcgaattctgaatggatgttcaatccaagctgagcgagggggaggaagagctactagagaaaaagaagaatgaaataccttcgattcgaaccgcgatgcgatggaggccggcggcgtcgcctctggatccaaacctgctcgaggaggctgcgattgcgatggagacgaagctagggcatgctcgccgccggagctagtgagatggagagggtggcggtgagcggcggaggggaatttgggaccaaagggcggtgaacgagccgagctcgagcgagccaacctgaataggctcaaagccgagtcggggctctggagcctatcgccctatcctagtattgaactcttgagggttgttaggctcgagctcggctcgagcaatgctatgtgaggcttggagctcggctcgtctgatactctaccatggcattaatggaaatacaagaatattgtttggacaacgtgtagaataaactttatctaaaaaaacatgtatcgtagagtacattatatagtccgggaaaaagagtaaattatagtatcaatattattctttatactaatatatcttattagtttattgtttataggttcagacgctcaattgaagatttattgctccttcgcaggttccattttataccctatactttcacgaaagttaaaaaatcacctctaaacccatcaatttactgtttgttgtagaaaacacagtaagattagacgaaatactctatccagctgtgaaatatctccatattgtcccatatgtcgagttgaaatctttgtgcagtgccacctggcatttttgcaccgttggccgaatggccgttgcctattgtacccggccaaattgtcagcctgaactatcaaaacaatctaataataaagcatataagatatcaaagcaagctgagaccggttaagggtcaaagtgccagcatcagaaataagggaagcttgctactcaagatagcatataatcatcttctattacagcactagaacatgctcgataatatgagaattaataccagaacatgtattgtccatcagaccataactcactttcaaatatcaataatctgttacatatcataagacgacaattgtatcaaaagggataatactcgacaaggcttttacacttccataaaaattttcccgatctaagctcccattccacttgagctcccaactttcaacggtactgcaaatgaataagatgcactttgagaggtccagggattaaaataacagcaaaaagctagataacacaaacatctgcacaaaaaaataactaaataaccgcttattcattcaagtattccagaacaataagataaaacaatgtagaaaattctaacgtcacaattctggcataaaatcgggtgcattacatctgcacgataaaataagtaaataaccacattcattcaagtattccataacaataagatgagacgatgtggaaaattctaacatctccacaattctagcataaaatcgggtgcattaatattttaagcaagaggtagcctttgaattgtggttagcaacttttttttaacaaaaggaaactaccctgctttaattggaagcaacatatcaaaaaggaaaaacataaaagaagggaacccatatgaaagatgatagttgtagtctattgattagcaatagatcctcctattattcgttgaactacagagagatgtttgcgatacgtttgaagtgttgacatttagaaggcagctacaagtgatagctaatgagctcacatggggcacatggcacatactcatactatgttggataagtggtgaagataacaaataagacaggttttcaaaattaactaatattgttataatattggcatctgcaaaagataatctcagaaacaaaagcagtgtgtgcatcaattccaattctaactggccatcttatgatctgtaattattcataccagctcgaccagaacagaactgacaaaatgagaatgggaacatgaggcgacaacggataacacaatacacaagctgtcaagcaggaaataaaacgtggaggaggaacaacgcggcacagtttgtgacattatcgctacgtcgttaggaactaccacaacaccgcacacgggatgcaacactattgcaccaaacaatttcaccatcaaaaagtaaaactgctaacttgagcctgcatattacaggaagcaactagcaacctaaaaaaatatgaagagtataccttgatgaagccaatgtccttggcgttgctgcggaagcactgcctgcagcacatgagcccgtacttccggatcaagccatgcgggttgccgcaaacacggctgcaacaacaaatccacaccacaaatccgtaagcactcgtcaagcaatccaagaaaaagggcgcacgaacctttctaccggaagcaagagataaactactacagtataaaatctagcaacatgcgaattcacgccacaaaatctgacaaatctgacccgatgctacgcacacagatagaagaaatactcctatggttcgtcaccgaactgaatgaaaacacggcgcgggggatcgcgagtagagtagagaggattaccaaaccctggatccggggccgtagttcttggggtgcgagttccacacgttggagtgtcccatggcggcggcggcggaggtcgtgagttgtaaaccctagaatgaacgaaatgagcgcgtt
More
|
||||||||||
| CDS seq | atgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatccagggtttgccgtgtttgcggcaacccgcatggcttgatccggaagtacgggctcatgtgctgcaggcagtgcttccgcagcaacgccaaggacattggcttcatcaagctccggcggcgagcatgccctagcttcgtctccatcgcaatcgcagcctcctcgagcaggtttggatccagaggcgacgccgccggcctccatcgcatcgcggttcgaatcgaaggatcaagaaaaattgggggttcagctgagctctatgccccaagtgaggcctgcctctgccgagaagccgactcggcaatgggcggcatggacacgccaagaggaacagagctttttcaatgcgctgcgcctggaaggaaaaatgcagcaataacttttcctttgtgtcagaattttgagaagatcacgctccgtgtccagagcaaaaacaaggatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttcttggtcctgagttctcacttgatgcaaaaaattcaaaggacactgttgctgctatgctccgctggtggtctctgcttgaaaaatttagctgcagtgcatcaaaactgcatctgaagcctcggagattcaaaacattcgtagaagcattggtgcatgaccatttgttactttcccactcctttggaaatcaactgctaaaggacaggaataaaaccagaaaaaagtgtccacgaggggatgagtgcctttcttcttcatctccaattctgaacaggactgctggaaatgaatcttcctcagtaaaactcctacctgtggatgtctcaaatggtagcaaagtagcatcttcaaaaggggcagttttcaagaggggtgcagaaccaaattccaataacaagtcaggttcaactaaatgggacctctctgccacaattactgtgaaacagaaaaggagagcaggtggtggcattgcatctactgcatataaaaaatgggagagagatgccatggctggtgtttctttagtcgctgatgcagctgaagagcttgagcgcaacacagtgaatgttgatgcaaggacattatctccctcatcaaacaatgtttgtaccgttgatgatccaggcacaaatcgtatgaatgaagcagatcaacaagcacctgcaaagctgaaattgcagttatttccaatcaatgaagccacacgaaaggcattggaaaaggatgaacataatccacatctggaactcacagttagcggtaggaaaaaaatatcttctgtactagaacatcttaaccgcaagtggggcagctcaaacattgcgtctggagagcttttgctttttccatattgtgctcaccgagaagatttagctacctatcagagatggaccacaagagatacagttgtggtggctgatgtttttctttctgtgaatagcccgcctgtttttcgattaaggtatggttggttttcccttgctgagcttgaaggaggaagtggaatatcttcaactcattttaagaattgcatgatgcctgaagacatccatgccaaatctccctcagacgcttgtgtgcagaaggatggtacttttctcaatagttgtgctcctgaggaacacctttgtaattcaaaagatcggccggcattatttcttgctatgacatttagtacaggcaagagcgctaaggggcaagagcagcacagtgattttcccgcctcatggtttagcaggcagaagcaagaaaaagattccacaaaccaagttttagaggctaatctagggatggattgtgctataatatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactaacagaagcatccataggtactaatacagattgtccagggacagctattgccaaaaacacattgtttcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcacgcttctcgtcataaaacagtagagcagccagcccttgcatcccattcgaccatctggggtgctgaagaaacctgtgatgagttcagttttaacttggcagcatctaggaagcaagaaagttcaaacacttcagctagcagctctcctggtagtgatagtgttgttcttccttcaacctcacaagggtttcaaggctttcttcaggacttagcaggagcaaaggttgctgataatccttgtatggatgatgccaaagatatggaggcactttgtgccaattctccacctcgaagtaaaagtgattctgggttaaaggatcaatctctagctgacttatattgggctgattcacttggaccactggacttagagataccatccgtgagataccaagctgaggacttactcttaggagacagtcagaatagttggaatcgcatgatggtgaatagcctggatgcgtttcgaaacctgtcattcttcatggcagataagaatgactcaatcccatccgtcatgtag
More
|
||||||||||
| Protein seq | MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKLRRRACPSFVSIAIAASSSRFGSRGDAAGLHRIAVRIEGSRKIGGSAELYAPSEACLCREADSAMGGMDTPRGTELFQCAAPGRKNAAITFPLCQNFEKITLRVQSKNKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTVAAMLRWWSLLEKFSCSASKLHLKPRRFKTFVEALVHDHLLLSHSFGNQLLKDRNKTRKKCPRGDECLSSSSPILNRTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAEPNSNNKSGSTKWDLSATITVKQKRRAGGGIASTAYKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVDDPGTNRMNEADQQAPAKLKLQLFPINEATRKALEKDEHNPHLELTVSGRKKISSVLEHLNRKWGSSNIASGELLLFPYCAHREDLATYQRWTTRDTVVVADVFLSVNSPPVFRLRYGWFSLAELEGGSGISSTHFKNCMMPEDIHAKSPSDACVQKDGTFLNSCAPEEHLCNSKDRPALFLAMTFSTGKSAKGQEQHSDFPASWFSRQKQEKDSTNQVLEANLGMDCAIISEGEWADTLTDISVGYLLTEASIGTNTDCPGTAIAKNTLFLENPCSYDSFDAAVALHASRHKTVEQPALASHSTIWGAEETCDEFSFNLAASRKQESSNTSASSSPGSDSVVLPSTSQGFQGFLQDLAGAKVADNPCMDDAKDMEALCANSPPRSKSDSGLKDQSLADLYWADSLGPLDLEIPSVRYQAEDLLLGDSQNSWNRMMVNSLDAFRNLSFFMADKNDSIPSVM |
||||||||||
| Function | TSL-kinase interacting protein 1 [UniProtKB/Swiss-Prot:Q8LJT8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0035540 | OsNaBo_03g0035540.01 | Chr03 | 34462169 | 34470897 | - | NAM | ||
| CDS seq | atgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatccagggtttgccgtgtttgcggcaacccgcatggcttgatccggaagtacgggctcatgtgctgcaggcagtgcttccgcagcaacgccaaggacattggcttcatcaagctccggcggcgagcatgccctagcttcgtctccatcgcaatcgcagcctcctcgagcaggtttggatccagaggcgacgccgccggcctccatcgcatcgcggttcgaatcgaaggatcaagaaaaattgggggttcagctgagctctatgccccaagtgaggcctgcctctgccgagaagccgactcggcaatgggcggcatggacacgccaagaggaacagagctttttcaatgcgctgcgcctggaaggaaaaatgcagcaataacttttcctttgtgtcagaattttgagaagatcacgctccgtgtccagagcaaaaacaaggatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttcttggtcctgagttctcacttgatgcaaaaaattcaaaggacactgttgctgctatgctccgctggtggtctctgcttgaaaaatttagctgcagtgcatcaaaactgcatctgaagcctcggagattcaaaacattcgtagaagcattgggaaatcaactgctaaaggacaggaataaaaccagaaaaaagtgtccacgaggggatgagtgcctttcttcttcatctccaattctgaacaggactgctggaaatgaatcttcctcagtaaaactcctacctgtggatgtctcaaatggtagcaaagtagcatcttcaaaaggggcagttttcaagaggggtgcagaaccaaattccaataacaagtcaggttcaactaaatgggacctctctgccacaattactgtgaaacagaaaaggagagcaggtggtggcattgcatctactgcatataaaaaatgggagagagatgccatggctggtgtttctttagtcgctgatgcagctgaagagcttgagcgcaacacagtgaatgttgatgcaaggacattatctccctcatcaaacaatgtttgtaccgttgatgatccaggcacaaatcgtatgaatgaagcagatcaacaagcacctgcaaagctgaaattgcagttatttccaatcaatgaagccacacgaaaggcattggaaaaggctaatctagggatggattgtgctataatatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactaacagaagcatccataggtactaatacagattgtccagggacagctattgccaaaaacacattgtttcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcacgcttctcgtcataaaacagtagagcagccagcccttgcatcccattcgaccatctggggtgctgaagaaacctgtgatgagttcagttttaacttggcagcatctaggaagcaagaaagttcaaacacttcagctagcagctctcctggtagtgatagtgttgttcttccttcaacctcacaagggtttcaaggctttcttcaggacttagcaggagcaaaggttgctgataatccttgtatggatgatgccaaagatatggaggcactttgtgccaattctccacctcgaagtaaaagtgattctgggttaaaggatcaatctctagctgacttatattgggctgattcacttggaccactggacttagagataccatccgtgagataccaagctgaggacttactcttaggagacagtcagaatagttggaatcgcatgatggtgaatagcctggatgcgtttcgaaacctgtcattcttcatggcagataagaatgactcaatcccatccgtcatgtag
More
|
|||||||
| Protein seq | MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKLRRRACPSFVSIAIAASSSRFGSRGDAAGLHRIAVRIEGSRKIGGSAELYAPSEACLCREADSAMGGMDTPRGTELFQCAAPGRKNAAITFPLCQNFEKITLRVQSKNKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTVAAMLRWWSLLEKFSCSASKLHLKPRRFKTFVEALGNQLLKDRNKTRKKCPRGDECLSSSSPILNRTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAEPNSNNKSGSTKWDLSATITVKQKRRAGGGIASTAYKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVDDPGTNRMNEADQQAPAKLKLQLFPINEATRKALEKANLGMDCAIISEGEWADTLTDISVGYLLTEASIGTNTDCPGTAIAKNTLFLENPCSYDSFDAAVALHASRHKTVEQPALASHSTIWGAEETCDEFSFNLAASRKQESSNTSASSSPGSDSVVLPSTSQGFQGFLQDLAGAKVADNPCMDDAKDMEALCANSPPRSKSDSGLKDQSLADLYWADSLGPLDLEIPSVRYQAEDLLLGDSQNSWNRMMVNSLDAFRNLSFFMADKNDSIPSVM
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0035540 | OsNaBo_03g0035540.02 | Chr03 | 34462464 | 34470897 | - | NAM | ||
| CDS seq | atgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatccagggtttgccgtgtttgcggcaacccgcatggcttgatccggaagtacgggctcatgtgctgcaggcagtgcttccgcagcaacgccaaggacattggcttcatcaagctccggcggcgagcatgccctagcttcgtctccatcgcaatcgcagcctcctcgagcaggtttggatccagaggcgacgccgccggcctccatcgcatcgcggttcgaatcgaaggatcaagaaaaattgggggttcagctgagctctatgccccaagtgaggcctgcctctgccgagaagccgactcggcaatgggcggcatggacacgccaagaggaacagagctttttcaatgcgctgcgcctggaaggaaaaatgcagcaataacttttcctttgtgtcagaattttgagaagatcacgctccgtgtccagagcaaaaacaaggatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttcttggtcctgagttctcacttgatgcaaaaaattcaaaggacactgttgctgctatgctccgctggactgctggaaatgaatcttcctcagtaaaactcctacctgtggatgtctcaaatggtagcaaagtagcatcttcaaaaggggcagttttcaagaggggtgcagaaccaaattccaataacaagtcaggttcaactaaatgggacctctctgccacaattactgtgaaacagaaaaggagagcaggtggtggcattgcatctactgcatataaaaaatgggagagagatgccatggctggtgtttctttagtcgctgatgcagctgaagagcttgagcgcaacacagtgaatgttgatgcaaggacattatctccctcatcaaacaatgtttgtaccgttgatgatccaggcacaaatcgtatgaatgaagcagatcaacaagcacctgcaaagctgaaattgcagttatttccaatcaatgaagccacacgaaaggcattggaaaaggatgaacataatccacatctggaactcacagttagcggtaggaaaaaaatatcttctgtactagaacatcttaaccgcaagtggggcagctcaaacattgcgtctggagagcttttgctttttccatattgtgctcaccgagaagatttagctacctatcagagatggaccacaagagatacagttgtggtggctgatgtttttctttctgtgaatagcccgcctgtttttcgattaaggtatggttggttttcccttgctgagcttgaaggaggaagtggaatatcttcaactcattttaagaattgcatgatgcctgaagacatccatgccaaatctccctcagacgcttgtgtgcagaaggatggtacttttctcaatagttgtgctcctgaggaacacctttgtaattcaaaagatcggccggcattatttcttgctatgacatttagtacaggcaagagcgctaaggggcaagagcagcacagtgattttcccgcctcatggtttagcaggcagaagcaagaaaaagattccacaaaccaagttttagaggctaatctagggatggattgtgctataatatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactaacagaagcatccataggtactaatacagattgtccagggacagctattgccaaaaacacattgtttcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcacgcttctcgtcataaaacagtagagcagccagcccttgcatcccattcgaccatctggggtgctgaagaaacctgtgatgagttcagttttaacttggcagcatctaggaagcaagaaagttcaaacacttcagctagcagctctcctggtagtgatagtgttgttcttccttcaacctcacaagggtttcaaggctttcttcaggacttagcaggagcaaaggttgctgataatccttgtatggatgatgccaaagatatggaggcactttgtgccaattctccacctcgaagtaaaagtgattctgggttaaaggatcaatctctagctgacttatattgggctgattcacttggaccactggacttagagataccatccgtgagataccaagctgaggacttactcttaggagacagtcagaatagttggaatcgcatgatggtgaatagcctggatgcgtttcgaaacctgtcattcttcatggcagataagaatgactcaatcccatccgtcatgtag
More
|
|||||||
| Protein seq | MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKLRRRACPSFVSIAIAASSSRFGSRGDAAGLHRIAVRIEGSRKIGGSAELYAPSEACLCREADSAMGGMDTPRGTELFQCAAPGRKNAAITFPLCQNFEKITLRVQSKNKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTVAAMLRWTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAEPNSNNKSGSTKWDLSATITVKQKRRAGGGIASTAYKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVDDPGTNRMNEADQQAPAKLKLQLFPINEATRKALEKDEHNPHLELTVSGRKKISSVLEHLNRKWGSSNIASGELLLFPYCAHREDLATYQRWTTRDTVVVADVFLSVNSPPVFRLRYGWFSLAELEGGSGISSTHFKNCMMPEDIHAKSPSDACVQKDGTFLNSCAPEEHLCNSKDRPALFLAMTFSTGKSAKGQEQHSDFPASWFSRQKQEKDSTNQVLEANLGMDCAIISEGEWADTLTDISVGYLLTEASIGTNTDCPGTAIAKNTLFLENPCSYDSFDAAVALHASRHKTVEQPALASHSTIWGAEETCDEFSFNLAASRKQESSNTSASSSPGSDSVVLPSTSQGFQGFLQDLAGAKVADNPCMDDAKDMEALCANSPPRSKSDSGLKDQSLADLYWADSLGPLDLEIPSVRYQAEDLLLGDSQNSWNRMMVNSLDAFRNLSFFMADKNDSIPSVM
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0035540 | OsNaBo_03g0035540.03 | Chr03 | 34462516 | 34470897 | - | NAM | ||
| CDS seq | atgggacactccaacgtgtggaactcgcaccccaagaactacggccccggatccagggtttgccgtgtttgcggcaacccgcatggcttgatccggaagtacgggctcatgtgctgcaggcagtgcttccgcagcaacgccaaggacattggcttcatcaagctccggcggcgagcatgccctagcttcgtctccatcgcaatcgcagcctcctcgagcaggtttggatccagaggcgacgccgccggcctccatcgcatcgcggttcgaatcgaaggatcaagaaaaattgggggttcagctgagctctatgccccaagtgaggcctgcctctgccgagaagccgactcggcaatgggcggcatggacacgccaagaggaacagagctttttcaatgcgctgcgcctggaaggaaaaatgcagcaataacttttcctttgtgtcagaattttgagaagatcacgctccgtgtccagagcaaaaacaaggatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttcttggtcctgagttctcacttgatgcaaaaaattcaaaggacactgttgctgctatgctccgctggtggtctctgcttgaaaaatttagctgcagtgcatcaaaactgcatctgaagcctcggagattcaaaacattcgtagaagcattggtgcatgaccatttgttactttcccactcctttggaaatcaactgctaaaggacaggaataaaaccagaaaaaagtgtccacgaggggatgagtgcctttcttcttcatctccaattctgaacaggactgctggaaatgaatcttcctcagtaaaactcctacctgtggatgtctcaaatggtagcaaagtagcatcttcaaaaggggcagttttcaagaggggtgcagaaccaaattccaataacaagtcaggttcaactaaatgggacctctctgccacaattactgtgaaacagaaaaggagagcaggtggtggcattgcatctactgcatataaaaaatgggagagagatgccatggctggtgtttctttagtcgctgatgcagctgaagagcttgagcgcaacacagtgaatgttgatgcaaggacattatctccctcatcaaacaatgtttgtaccgttgatgatccaggcacaaatcgtatgaatgaagcagatcaacaagcacctgcaaagctgaaattgcagttatttccaatcaatgaagccacacgaaaggcattggaaaaggatgaacataatccacatctggaactcacagttagcggtaggaaaaaaatatcttctgtactagaacatcttaaccgcaagtggggcagctcaaacattgcgtctggagagcttttgctttttccatattgtgctcaccgagaagatttagctacctatcagagatggaccacaagagatacagttgtggtggctgatgtttttctttctgtgaatagcccgcctgtttttcgattaaggtatggttggttttcccttgctgagcttgaaggaggaagtggaatatcttcaactcattttaagaattgcatgatgcctgaagacatccatgccaaatctccctcagacgcttgtgtgcagaaggatggtacttttctcaatagttgtgctcctgaggaacacctttgtaattcaaaagatcggccggcattatttcttgctatgacatttagtacaggcaagagcgctaaggggcaagagcagcacagtgattttcccgcctcatggtttagcaggcagaagcaagaaaaagattccacaaaccaagttttagaggctaatctagggatggattgtgctataatatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactaacagaagcatccataggtactaatacagattgtccagggacagctattgccaaaaacacattgtttcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcacgcttctcgtcataaaacagtagagcagccagcccttgcatcccattcgaccatctggggtgctgaagaaacctgtgatgagttcagttttaacttggcagcatctaggaagcaagaaagttcaaacacttcagctagcagctctcctggtagtgatagtgttgttcttccttcaacctcacaagggtttcaaggctttcttcaggacttagcaggagcaaaggttgctgataatccttgtatggatgatgccaaagatatggaggcactttgtgccaattctccacctcgaagtaaaagtgattctgggttaaaggatcaatctctagctgacttatattgggctgattcacttggaccactggacttagagataccatccgtgagataccaagctgaggacttactcttaggagacagtcagaatagttggaatcgcatgatggtgaatagcctggatgcgtttcgaaacctgtcattcttcatggcagataagaatgactcaatcccatccgtcatgtag
More
|
|||||||
| Protein seq | MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKLRRRACPSFVSIAIAASSSRFGSRGDAAGLHRIAVRIEGSRKIGGSAELYAPSEACLCREADSAMGGMDTPRGTELFQCAAPGRKNAAITFPLCQNFEKITLRVQSKNKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTVAAMLRWWSLLEKFSCSASKLHLKPRRFKTFVEALVHDHLLLSHSFGNQLLKDRNKTRKKCPRGDECLSSSSPILNRTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAEPNSNNKSGSTKWDLSATITVKQKRRAGGGIASTAYKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVDDPGTNRMNEADQQAPAKLKLQLFPINEATRKALEKDEHNPHLELTVSGRKKISSVLEHLNRKWGSSNIASGELLLFPYCAHREDLATYQRWTTRDTVVVADVFLSVNSPPVFRLRYGWFSLAELEGGSGISSTHFKNCMMPEDIHAKSPSDACVQKDGTFLNSCAPEEHLCNSKDRPALFLAMTFSTGKSAKGQEQHSDFPASWFSRQKQEKDSTNQVLEANLGMDCAIISEGEWADTLTDISVGYLLTEASIGTNTDCPGTAIAKNTLFLENPCSYDSFDAAVALHASRHKTVEQPALASHSTIWGAEETCDEFSFNLAASRKQESSNTSASSSPGSDSVVLPSTSQGFQGFLQDLAGAKVADNPCMDDAKDMEALCANSPPRSKSDSGLKDQSLADLYWADSLGPLDLEIPSVRYQAEDLLLGDSQNSWNRMMVNSLDAFRNLSFFMADKNDSIPSVM
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_03g0035540 | OsNaBo_03g0035540.04 | Chr03 | 34469097 | 34470823 | - | IsoSeq | ||
| CDS seq | tgtggaactcgcaccccaagaactacggccccggatccagggtttgccgtgtttgcggcaacccgcatg |
|||||||
| Protein seq | CGTRTPRTTAPDPGFAVFAATRM |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr03 | 34465503 | 34465598 | - | OsNaBo_03g0035540.03 | OsNaBo_03g0035540.03,OsNaBo_03g0035540.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.907204 | 69.611107 | 54.751011 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0773150 | RBH | 20.111551 | 20.659859 | 31.288784 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56241 | RBH | 11.758745 | 12.013799 | 6.963650 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0773150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036390 | RBH | 0.070966 | 5.852296 | 2.290230 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036070 | RBH | 0.796898 | 41.849422 | 16.969738 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036150 | RBH | 16.055992 | 81.958855 | 38.676056 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036440 | RBH | 1.884974 | 7.177837 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035950 | RBH | 5.220054 | 3.004159 | 11.800661 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0546000 | RBH | 3.8593855 | 8.501191 | 4.8348 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035750 | RBH | 0.036170 | 0.330584 | 1.061840 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0546700 | RBH | 3.845638 | 5.8235805 | 12.5226855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036230 | RBH | 0.097847 | 0.093114 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036250 | RBH | 3.885648 | 135.992279 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035900 | RBH | 3.471021 | 7.551735 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0036000 | RBH | 1.531556 | 0.437933 | 4.052024 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035940 | RBH | 0.118162 | 1.679724 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035750 | RBH | 0.123340 | 0.623721 | 1.536628 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021500 | SBH | 6.890395 | 93.797638 | 46.604500 |
