Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0036230 | OGI:03089680 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:35166428-35172631 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acttgatgtagcttgttatataggttgtgattagggcctgaatttatgtctagagtatgtccttgaatcgctgttacatattcagcgaacattgaggaatctggccgaagggagaagcacaagattacctatgggtatggcccaaaattaattgggagaagcccaactgagcgatgtactggtcaggtttccagcctaaccaaacccatcagaaaattctggcgtcgccttgaagaaacaaacgctgctcgcatactatcataaacaacacagtatgccgataaacttcagatatcaaagcaaaactgagaacagttcagcgcaattgatcagaagcatacctgtatacacggcagtcatcagaagctttactgtaaccaagagattgtgtgagctttttgtacagggacaccacaatttacacgacatacatgtaacatgttagtacagctcttactatatatcttacacagcagaatgcgtccctattgactgcaaagaacagcaagtccgcagctgttggatttcccacaaacagcttgacttggacaatgcaaatcctcctctacagcgagatgcatccttggtagtacttcactagccaacatagcaagcgacgagagcaatgaacggcgcccagaattcacagttctacatgacggatgggattgagtcattcttatctgccatgaagaatgacaggtttcgaaacgcatccaggctattcaccatcatgcgattccaactattctgactgtctcctaagagtaagtcctcagcttggtatctcacggatggtatctctaagtccagtggtccaagtgaatcagcctatccaaagagaagacatagtaagttatgatcagtgttgatagattatactagaaactaaaacaggcagggataggatatcttacccaatataagtcagctagagattgatcctttaacccagaatcacttttacttcgaggtggagaattggcacaaagtgcctccatatctttggcatcatccatacaaggattatcagcaacctttgctcctgctaagtcctgcaaacatgaaataaatcatagattaacaacattgatgtataaaaagtcgttttattctacaagagaccaagagatggaaacaaacctgaagaaagccttgaaacccttgtgaggttgaaggaagaacaacactatcactaccaggagagctgctagctgaagtgtttgaactttcttgcttcctagatgctgccaagttaaaactgaactcatcacaggtttcttcagcaccccagatggtcgaatgggatgcaagggctggctgctctactgttttatgacgagaagcgtgaagagcaacagcagcatcaaatgaatcatagctgcagggattctcaagaaacaatgtgTttttggcaatagctgtccctggacaatctgtattagtacctatggatgcttctgttagtaagtatccaacactgatatcagtaagggtatctgcccactctccttcagatattatagcacaatccatccctagattagcctgaagtataacagaagcaattagaagatagcagattaatgttcacttgacaaaaatatggatggaactgaagttggacctctaaaacttggtttgtggaatctttttcttgcttctgcctgctaaaccatgaggcgggaaaatcactgtgctgctcttgccccttagcgctcttgcctgtactaaatgtcatagcaagaaataatgccggccgatcttttgaattacaaaggtgttcctcaggagcacaactattgagaaaagtaccatccttctgcacacaagcgtctgagggagatttggcatggatgtcttcaggcatcatgcaattcttaaaatgagttgaagatattccacttcctccttcaagctcagcaagggaaaaccaaccataccttattggcgacaacagttagcacttgttatggctttcaacaaatggtcttatcacaatattatagtttgttacccaggaattcatccataccttaatcgaaaaacaggcgggctattcacagaaagaaaaacatcagccaccacaactgtatctcttgtggtccatctctgataggtagctaaatcttctcggtgagcacaatatggaaaaagcaaaagctctccagacgcaatgtttgagctgccccacttgcggttaagatgttctagtacagaagataTttttttcctaccgctaactgtgagttccagatgtggattatgttcatcctgttgaaaaaagataggactatcaatatctcaaacaccatcgaaaattcataaggtaaatagtgctagtaaggttatttgcactccacattccattagtcccatttatcctgagaaattttatcaaccacagtgatttgagtgtccgagccaatagtaaatcagtaatagctgttgtgctaacacagctgctgcaggaaacacatgattcataatttcatattgcagcttggtggcaacaaacaggcatatttaccttttccaatgcctttcgtgtggcttcattgattggaaataactgcaatttcagctttgcaggtgcttgttgatctgcttcattcatacgatttgtgcctggatctgccagtgcaggataaaacatcaagacaataggaaccagtaccagccatttctagtcagagagcagtgataagaaagaataccatcaacggtacaaacattgtttgatgagggagataatgtccttgcatcaacattcactgtgttgcgctcaagctcttcagctgcatcagcgactaaagaaacaccagcCATGGcatctctctcccattttttatatgcagtagatgcaatgccaccacctaaaatacaagtccactgctctcaaaactattgtaaggaaaattcgacactttaagctcacataataaaatttattggattatcgacatttagctaagacatacagactgcatatcgcataaaatgaaaaaagtaaagggtgtgccacatgaaaccaaaaaaaaaaaaaaaggcagtgtcacctgctctccttttctgtttcacagtaattgtggcagagaggtcccatttagttgaacctgacttgttattggaatttggttctgcacccctcttgaaaactgccccttttgaagatgctactttgctaccatttgagacatccacaggtaggagttttactgaggaagattcatttccagcagtcctgttcagaattggagatgaagaagaaaggcactcatcccctcgtggacacttttttctggttttattcctgtcctttagcagttgatttccctataaagttggatatatcacatgagaaaaaaaacaaaaatgaacatttttacagttacaaaggagtgggaaagtaacaaatggtcatgcaccaatgcttctacgaatgttttgaatctccgaggcttcagatgcagttttgatgcactgcagctaaatttttcaagcagagaccacctgcatagaacgaattcagtatcggagagttttccatgcaatgtaaaagaaacaacatcagatcaaatcaaaagcaatgacaataaacaacagacagtatctttctagtgcatagactagaatgcaatctgcatggaaataaaaaatatatctttcatcagaagaatattctgaaccacgaagtatgccaccaaaatttcagagaccattttatgggacaggtctgaatctaaaatagaagcagtaaatatgttaaggtgtctatacagtattggtatgaaggccccatagttctaacctactaggcattatagcagtaaattatagacgtgtcctctgtaaattaaaaggatcacgtacctactacagtcctaggttcctagcctactaggaaaaggatatatatcatgaagatagctcagcaaaattttgaggccaaacactaccctttgcaatcatgttatataaataatatcaagcagtagggaccacatctaatcagattaatttgcatgcagacattcattccgttaccagcggagcatagcagcaacagtgtcctttgaattttttgcatcaagtgagaactcaggaccaagaagtttcttcatgcgtcgaacaagacgatagtaataatgtctgacctatattgcAaaaaataaaaggcaatgaattatcagtccaacagaagaaattcaggtgttctctaattgatgcaaatattatctataactttatatatgatgaacatacttatgctagctatgtgaggattgagagataattaagtgtctatgtatcagagagaaaactgtactgatttattggcagctatcacttaagcatgtccagtgcccacatagtcaacagaacatgcttagatgatcaggaacgagcagtgcaggaaaattcctctctaaatgttccagcctccaggtgcagaatcttaggtggtaagctgctgaggagtgtgctttatggccaaagatggacaaaatagggggataatatcgagatacatctaaagcctgaataaaacttagtgccaattctaaacatcatgttttggcattgagagcaataggtcacccggagtgcctactgatgaacaaaacttctttcaaccagtggctgtgtagcagccggttgaaaatccgagagtctcaagtctcaacgccggagtttcgatacggtagcaacacttgtggcttcgacgatctggaaggagcagaatgccagagtcttcaaccaaagttttagggcatggacagatgtggcgagggaaatggctcaagaggcaacgctttggcgtcaagcgaattcagcaatccccgccctactcttccgagagaatcatggtagccaaaatgtgctgcgagaattaggcctttgattttgtaatgctttccagtccctgtcccctgctgctctttctttaaatgtaaataacctttatttctcttaatggaaaaaattcgcctctggcgtattcccgaaaaaaaaaacatcatgttctgaagtttgagtttcccataacagatcggctgcaagtatatcaatagaaacttgaaaaaaagatgaaatcagctttagtaaagaagagggatcaattgcaagtgaggaagataaatcggctccaagtgaaagtacacaatctggatgggaatctaaaaggagggatgttgtaatccatccaccctgcagccttctccagttgaaccacgaaaatcagcaagaatgtaggtatatgctacaggatgctggtgctatgtcaagcaacaacaacgaccatggttgaaaatgagatttgcccatgacagttacttctgatttttttttctcaaagcaaaatagatttattcaattctaattggcatcccatcatagtgaaagttatttagcacattgcatgtagaactaaaatttacagcctaacttgaatcttcctttcattcaaatttcctaattggttaaataaagaacgtcaaatatcataaaaaaatactaaatttatgatctaatgtgtatctaccactgcttcaacgtcctaacgtatcaatacagaatgttaaatatcatatgaacatcttacacctcttggccgaaaatggtgtacctgatccttgtttttgctctggacacggagcgtgatcttctcaaaattctgacacaaaggaaaagttattgctgcatctatcgatcagcgcacacattgatcagattgcaagaaacagcgtagcatcataacatcgatgcgtcttacttttccttccaggcgcagcgcattgaaaaagctctgttcctcttggcgtgtccatgccgcccattgccgagtcggcttctcggcagaggcaggcctcacttggggcatagagctcagctgaacccccaatttttcttgatcctggaaacaaattgcttcgattagtactgcatcacgcatgaaatcgacaggaaactggatggattaattggattgaaacaaacaacaatcgaattctgaatggatgttcaatccaagctgagcgagggggaggaagagctactagagaaaaagaagaatgaaataccttcgattcgaaccgcgatgcgatggaggccggcggcgtcgcctctggatccaaacctgctcgaggaggctgcgattgcgatggagacgaagctagggcatgctcgccgccggagctagtg
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| CDS seq | atgccccaagtgaggcctgcctctgccgagaagccgactcggcaatgggcggcatggacacgccaagaggaacagagctttttcaatgcgctgcgcctggaaggaaaaaattttgagaagatcacgctccgtgtccagagcaaaaacaaggatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttcttggtcctgagttctcacttgatgcaaaaaattcaaaggacactgttgctgctatgctccgctggtggtctctgcttgaaaaatttagctgcagtgcatcaaaactgcatctgaagcctcggagattcaaaacattcgtagaagcattgggaaatcaactgctaaaggacaggaataaaaccagaaaaaagtgtccacgaggggatgagtgcctttcttcttcatctccaattctgaacaggactgctggaaatgaatcttcctcagtaaaactcctacctgtggatgtctcaaatggtagcaaagtagcatcttcaaaaggggcagttttcaagaggggtgcagaaccaaattccaataacaagtcaggttcaactaaatgggacctctctgccacaattactgtgaaacagaaaaggagagcaggtggtggcattgcatctactgcatataaaaaatgggagagagatgCCATGgctggtgtttctttagtcgctgatgcagctgaagagcttgagcgcaacacagtgaatgttgatgcaaggacattatctccctcatcaaacaatgtttgtaccgttgatgatccaggcacaaatcgtatgaatgaagcagatcaacaagcacctgcaaagctgaaattgcagttatttccaatcaatgaagccacacgaaaggcattggaaaaggatgaacataatccacatctggaactcacagttagcggtaggaaaaaaAtatcttctgtactagaacatcttaaccgcaagtggggcagctcaaacattgcgtctggagagcttttgctttttccatattgtgctcaccgagaagatttagctacctatcagagatggaccacaagagatacagttgtggtggctgatgtttttctttctgtgaatagcccgcctgtttttcgattaaggtatggttggttttcccttgctgagcttgaaggaggaagtggaatatcttcaactcattttaagaattgcatgatgcctgaagacatccatgccaaatctccctcagacgcttgtgtgcagaaggatggtacttttctcaatagttgtgctcctgaggaacacctttgtaattcaaaagatcggccggcattatttcttgctatgacatttagtacaggcaagagcgctaaggggcaagagcagcacagtgattttcccgcctcatggtttagcaggcagaagcaagaaaaagattccacaaaccaagttttagaggctaatctagggatggattgtgctataatatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactaacagaagcatccataggtactaatacagattgtccagggacagctattgccaaaaAcacattgtttcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcacgcttctcgtcataaaacagtagagcagccagcccttgcatcccattcgaccatctggggtgctgaagaaacctgtgatgagttcagttttaacttggcagcatctaggaagcaagaaagttcaaacacttcagctagcagctctcctggtagtgatagtgttgttcttccttcaacctcacaagggtttcaaggctttcttcaggacttagcaggagcaaaggttgctgataatccttgtatggatgatgccaaagatatggaggcactttgtgccaattctccacctcgaagtaaaagtgattctgggttaaaggatcaatctctagctgacttatattgggctgattcacttggaccactggacttagagataccatccgtgagataccaagctgaggacttactcttaggagacagtcagaatagttggaatcgcatgatggtgaatagcctggatgcgtttcgaaacctgtcattcttcatggcagataagaatgactcaatcccatccgtcatgtag
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| Protein seq | MPQVRPASAEKPTRQWAAWTRQEEQSFFNALRLEGKNFEKITLRVQSKNKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTVAAMLRWWSLLEKFSCSASKLHLKPRRFKTFVEALGNQLLKDRNKTRKKCPRGDECLSSSSPILNRTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAEPNSNNKSGSTKWDLSATITVKQKRRAGGGIASTAYKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVDDPGTNRMNEADQQAPAKLKLQLFPINEATRKALEKDEHNPHLELTVSGRKKISSVLEHLNRKWGSSNIASGELLLFPYCAHREDLATYQRWTTRDTVVVADVFLSVNSPPVFRLRYGWFSLAELEGGSGISSTHFKNCMMPEDIHAKSPSDACVQKDGTFLNSCAPEEHLCNSKDRPALFLAMTFSTGKSAKGQEQHSDFPASWFSRQKQEKDSTNQVLEANLGMDCAIISEGEWADTLTDISVGYLLTEASIGTNTDCPGTAIAKNTLFLENPCSYDSFDAAVALHASRHKTVEQPALASHSTIWGAEETCDEFSFNLAASRKQESSNTSASSSPGSDSVVLPSTSQGFQGFLQDLAGAKVADNPCMDDAKDMEALCANSPPRSKSDSGLKDQSLADLYWADSLGPLDLEIPSVRYQAEDLLLGDSQNSWNRMMVNSLDAFRNLSFFMADKNDSIPSVM |
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| Function | TSL-kinase interacting protein 1 [UniProtKB/Swiss-Prot:Q8LJT8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0036230 | OsLima_03g0036230.03 | Chr03 | 35166723 | 35172627 | - | NAM | ||
| CDS seq | atgccccaagtgaggcctgcctctgccgagaagccgactcggcaatgggcggcatggacacgccaagaggaacagagctttttcaatgcgctgcgcctggaaggaaaaaattttgagaagatcacgctccgtgtccagagcaaaaacaaggatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttcttggtcctgagttctcacttgatgcaaaaaattcaaaggacactgttgctgctatgctccgctggtggtctctgcttgaaaaatttagctgcagtgcatcaaaactgcatctgaagcctcggagattcaaaacattcgtagaagcattgggaaatcaactgctaaaggacaggaataaaaccagaaaaaagtgtccacgaggggatgagtgcctttcttcttcatctccaattctgaacaggactgctggaaatgaatcttcctcagtaaaactcctacctgtggatgtctcaaatggtagcaaagtagcatcttcaaaaggggcagttttcaagaggggtgcagaaccaaattccaataacaagtcaggttcaactaaatgggacctctctgccacaattactgtgaaacagaaaaggagagcaggtggtggcattgcatctactgcatataaaaaatgggagagagatgCCATGgctggtgtttctttagtcgctgatgcagctgaagagcttgagcgcaacacagtgaatgttgatgcaaggacattatctccctcatcaaacaatgtttgtaccgttgatgatccaggcacaaatcgtatgaatgaagcagatcaacaagcacctgcaaagctgaaattgcagttatttccaatcaatgaagccacacgaaaggcattggaaaaggatgaacataatccacatctggaactcacagttagcggtaggaaaaaaAtatcttctgtactagaacatcttaaccgcaagtggggcagctcaaacattgcgtctggagagcttttgctttttccatattgtgctcaccgagaagatttagctacctatcagagatggaccacaagagatacagttgtggtggctgatgtttttctttctgtgaatagcccgcctgtttttcgattaaggtatggttggttttcccttgctgagcttgaaggaggaagtggaatatcttcaactcattttaagaattgcatgatgcctgaagacatccatgccaaatctccctcagacgcttgtgtgcagaaggatggtacttttctcaatagttgtgctcctgaggaacacctttgtaattcaaaagatcggccggcattatttcttgctatgacatttagtacaggcaagagcgctaaggggcaagagcagcacagtgattttcccgcctcatggtttagcaggcagaagcaagaaaaagattccacaaaccaagttttagaggctaatctagggatggattgtgctataatatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactaacagaagcatccataggtactaatacagattgtccagggacagctattgccaaaaAcacattgtttcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcacgcttctcgtcataaaacagtagagcagccagcccttgcatcccattcgaccatctggggtgctgaagaaacctgtgatgagttcagttttaacttggcagcatctaggaagcaagaaagttcaaacacttcagctagcagctctcctggtagtgatagtgttgttcttccttcaacctcacaagggtttcaaggctttcttcaggacttagcaggagcaaaggttgctgataatccttgtatggatgatgccaaagatatggaggcactttgtgccaattctccacctcgaagtaaaagtgattctgggttaaaggatcaatctctagctgacttatattgggctgattcacttggaccactggacttagagataccatccgtgagataccaagctgaggacttactcttaggagacagtcagaatagttggaatcgcatgatggtgaatagcctggatgcgtttcgaaacctgtcattcttcatggcagataagaatgactcaatcccatccgtcatgtag
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| Protein seq | MPQVRPASAEKPTRQWAAWTRQEEQSFFNALRLEGKNFEKITLRVQSKNKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTVAAMLRWWSLLEKFSCSASKLHLKPRRFKTFVEALGNQLLKDRNKTRKKCPRGDECLSSSSPILNRTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAEPNSNNKSGSTKWDLSATITVKQKRRAGGGIASTAYKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVDDPGTNRMNEADQQAPAKLKLQLFPINEATRKALEKDEHNPHLELTVSGRKKISSVLEHLNRKWGSSNIASGELLLFPYCAHREDLATYQRWTTRDTVVVADVFLSVNSPPVFRLRYGWFSLAELEGGSGISSTHFKNCMMPEDIHAKSPSDACVQKDGTFLNSCAPEEHLCNSKDRPALFLAMTFSTGKSAKGQEQHSDFPASWFSRQKQEKDSTNQVLEANLGMDCAIISEGEWADTLTDISVGYLLTEASIGTNTDCPGTAIAKNTLFLENPCSYDSFDAAVALHASRHKTVEQPALASHSTIWGAEETCDEFSFNLAASRKQESSNTSASSSPGSDSVVLPSTSQGFQGFLQDLAGAKVADNPCMDDAKDMEALCANSPPRSKSDSGLKDQSLADLYWADSLGPLDLEIPSVRYQAEDLLLGDSQNSWNRMMVNSLDAFRNLSFFMADKNDSIPSVM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0036230 | OsLima_03g0036230.01 | Chr03 | 35166428 | 35172631 | - | NAM | ||
| CDS seq | atgggcggcatggacacgccaagaggaacagagctttttcaatgcgctgcgcctggaaggaaaaatgcagcaataacttttcctttgtgtcagaattttgagaagatcacgctccgtgtccagagcaaaaacaaggatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttcttggtcctgagttctcacttgatgcaaaaaattcaaaggacactgttgctgctatgctccgctggactgctggaaatgaatcttcctcagtaaaactcctacctgtggatgtctcaaatggtagcaaagtagcatcttcaaaaggggcagttttcaagaggggtgcagaaccaaattccaataacaagtcaggttcaactaaatgggacctctctgccacaattactgtgaaacagaaaaggagagcaggtggtggcattgcatctactgcatataaaaaatgggagagagatgCCATGgctggtgtttctttagtcgctgatgcagctgaagagcttgagcgcaacacagtgaatgttgatgcaaggacattatctccctcatcaaacaatgtttgtaccgttgatgatccaggcacaaatcgtatgaatgaagcagatcaacaagcacctgcaaagctgaaattgcagttatttccaatcaatgaagccacacgaaaggcattggaaaaggctaatctagggatggattgtgctataatatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactaacagaagcatccataggtactaatacagattgtccagggacagctattgccaaaaAcacattgtttcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcacgcttctcgtcataaaacagtagagcagccagcccttgcatcccattcgaccatctggggtgctgaagaaacctgtgatgagttcagttttaacttggcagcatctaggaagcaagaaagttcaaacacttcagctagcagctctcctggtagtgatagtgttgttcttccttcaacctcacaagggtttcaaggctttcttcaggacttagcaggagcaaaggttgctgataatccttgtatggatgatgccaaagatatggaggcactttgtgccaattctccacctcgaagtaaaagtgattctgggttaaaggatcaatctctagctgacttatattgggctgattcacttggaccactggacttagagataccatccgtgagataccaagctgaggacttactcttaggagacagtcagaatagttggaatcgcatgatggtgaatagcctggatgcgtttcgaaacctgtcattcttcatggcagataagaatgactcaatcccatccgtcatg
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| Protein seq | MGGMDTPRGTELFQCAAPGRKNAAITFPLCQNFEKITLRVQSKNKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTVAAMLRWTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAEPNSNNKSGSTKWDLSATITVKQKRRAGGGIASTAYKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVDDPGTNRMNEADQQAPAKLKLQLFPINEATRKALEKANLGMDCAIISEGEWADTLTDISVGYLLTEASIGTNTDCPGTAIAKNTLFLENPCSYDSFDAAVALHASRHKTVEQPALASHSTIWGAEETCDEFSFNLAASRKQESSNTSASSSPGSDSVVLPSTSQGFQGFLQDLAGAKVADNPCMDDAKDMEALCANSPPRSKSDSGLKDQSLADLYWADSLGPLDLEIPSVRYQAEDLLLGDSQNSWNRMMVNSLDAFRNLSFFMADKNDSIPSVM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0036230 | OsLima_03g0036230.02 | Chr03 | 35166775 | 35172631 | - | NAM | ||
| CDS seq | atgggcggcatggacacgccaagaggaacagagctttttcaatgcgctgcgcctggaaggaaaaatgcagcaataacttttcctttgtgtcagaattttgagaagatcacgctccgtgtccagagcaaaaacaaggatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttcttggtcctgagttctcacttgatgcaaaaaattcaaaggacactgttgctgctatgctccgctggactgctggaaatgaatcttcctcagtaaaactcctacctgtggatgtctcaaatggtagcaaagtagcatcttcaaaaggggcagttttcaagaggggtgcagaaccaaattccaataacaagtcaggttcaactaaatgggacctctctgccacaattactgtgaaacagaaaaggagagcaggtggtggcattgcatctactgcatataaaaaatgggagagagatgCCATGgctggtgtttctttagtcgctgatgcagctgaagagcttgagcgcaacacagtgaatgttgatgcaaggacattatctccctcatcaaacaatgtttgtaccgttgatgatccaggcacaaatcgtatgaatgaagcagatcaacaagcacctgcaaagctgaaattgcagttatttccaatcaatgaagccacacgaaaggcattggaaaaggatgaacataatccacatctggaactcacagttagcggtaggaaaaaaAtatcttctgtactagaacatcttaaccgcaagtggggcagctcaaacattgcgtctggagagcttttgctttttccatattgtgctcaccgagaagatttagctacctatcagagatggaccacaagagatacagttgtggtggctgatgtttttctttctgtgaatagcccgcctgtttttcgattaaggtatggttggttttcccttgctgagcttgaaggaggaagtggaatatcttcaactcattttaagaattgcatgatgcctgaagacatccatgccaaatctccctcagacgcttgtgtgcagaaggatggtacttttctcaatagttgtgctcctgaggaacacctttgtaattcaaaagatcggccggcattatttcttgctatgacatttagtacaggcaagagcgctaaggggcaagagcagcacagtgattttcccgcctcatggtttagcaggcagaagcaagaaaaagattccacaaaccaagttttagaggctaatctagggatggattgtgctataatatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactaacagaagcatccataggtactaatacagattgtccagggacagctattgccaaaaAcacattgtttcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcacgcttctcgtcataaaacagtagagcagccagcccttgcatcccattcgaccatctggggtgctgaagaaacctgtgatgagttcagttttaacttggcagcatctaggaagcaagaaagttcaaacacttcagctagcagctctcctggtagtgatagtgttgttcttccttcaacctcacaagggtttcaaggctttcttcaggacttagcaggagcaaaggttgctgataatccttgtatggatgatgccaaagatatggaggcactttgtgccaattctccacctcgaagtaaaagtgattctgggttaaaggatcaatctctagctgacttatattgggctgattcacttggaccactggacttagagataccatccgtgagataccaagctgaggacttactcttaggagacagtcagaatagttggaatcgcatgatggtgaatagcctggatgcgtttcgaaacctgtcattcttcatggcagataagaatgactcaatcccatccgtcatg
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| Protein seq | MGGMDTPRGTELFQCAAPGRKNAAITFPLCQNFEKITLRVQSKNKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTVAAMLRWTAGNESSSVKLLPVDVSNGSKVASSKGAVFKRGAEPNSNNKSGSTKWDLSATITVKQKRRAGGGIASTAYKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVDDPGTNRMNEADQQAPAKLKLQLFPINEATRKALEKDEHNPHLELTVSGRKKISSVLEHLNRKWGSSNIASGELLLFPYCAHREDLATYQRWTTRDTVVVADVFLSVNSPPVFRLRYGWFSLAELEGGSGISSTHFKNCMMPEDIHAKSPSDACVQKDGTFLNSCAPEEHLCNSKDRPALFLAMTFSTGKSAKGQEQHSDFPASWFSRQKQEKDSTNQVLEANLGMDCAIISEGEWADTLTDISVGYLLTEASIGTNTDCPGTAIAKNTLFLENPCSYDSFDAAVALHASRHKTVEQPALASHSTIWGAEETCDEFSFNLAASRKQESSNTSASSSPGSDSVVLPSTSQGFQGFLQDLAGAKVADNPCMDDAKDMEALCANSPPRSKSDSGLKDQSLADLYWADSLGPLDLEIPSVRYQAEDLLLGDSQNSWNRMMVNSLDAFRNLSFFMADKNDSIPSVM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 35172104 | 35172204 | - | OsLima_03g0036230.01,OsLima_03g0036230.02 | OsLima_03g0036230.02,OsLima_03g0036230.01,OsLima_03g0036230.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.097847 | 0.093114 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0773100 | RBH | 0.227177 | 1.562631 | 2.516827 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56234 | RBH | 0.096905 | 0.995570 | 0.482994 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0773100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036390 | RBH | 0.070966 | 5.852296 | 2.290230 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036060 | RBH | 0.173451 | 0.000000 | 1.011890 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036140 | RBH | 0.310524 | 3.284971 | 6.400639 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036440 | RBH | 1.884974 | 7.177837 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035950 | RBH | 5.220054 | 3.004159 | 11.800661 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0546000 | RBH | 3.8593855 | 8.501191 | 4.8348 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035750 | RBH | 0.036170 | 0.330584 | 1.061840 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0546700 | RBH | 3.845638 | 5.8235805 | 12.5226855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0010110 | RBH | 0.556833 | 0.087322 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0010200 | SBH | 1.017361 | 5.971131 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035900 | RBH | 3.471021 | 7.551735 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035990 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035940 | RBH | 0.118162 | 1.679724 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035750 | RBH | 0.123340 | 0.623721 | 1.536628 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0035540 | RBH | 8.907204 | 69.611107 | 54.751011 |
