Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0035510 | OGI:03088350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:34649489-34655168 | ||||||||
| Gene Symbol | HD6, Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha, CK2, OsCKA2-4, CKA2-4, OspCKII | ||||||||||
| DNA seq | gtcatacaggtacctgttgcatcttaatcgttgttatggtaaaacattacagaaataaataattatgtgcatgtcacggcattcatcaaacgcaaccaacggagtgaattacagtttacaaatgcaaggctacaagcacattccacgatcgttcacacaaactcaaagtagtaccgtcgtggatcatcagctggatcatcattttagcaggtacacaagatcattgtggtcgtgctctgctaTtttctgcagctctcacttggaggaagtacggatgtgcctgcaagtattcatgattatggcattaatttgagaagtccaagagtaatcaaataacaatttgttcctcctacaactggccagatactatgtgaagatgaaacgttgttcattgcatacaaaagccaatgtggcagagaaatttgaagggtttctatctattgccaaatgcaccatttgccaaattatattgggttgaagttagcgatgcgagtaagcaatcctgttacctgcataaatacctacaacaattgaactagaattgagataaacaggcaaaaaataaccgattgcccgctccacttgcatccctagttgaagtgtacctatacaaatgcataacttgccaactatttttggttgagggtcaggaaaatgttttatgatattgtcataatacagagcaataagtgaaacagaatatgcctaaaatAaaaattgaacagaggtgtgataggataggaagatgaaagtactattatgacatcattgatgtaattcttatgactaaaaaggaggatatatactaaaatattcagcaataaactaacaatctcagtgaacagtcaatactgttacataaataggaaatatccagtcaaacaaaatcagtatcttcttggaatgtaacaaatattatctgtcggggtagacttaccatagcttcacgtgcagtgagcctatcttggtgatcataacgtagaagcttatcaagaaaatctacagcctacaaatgtacaagcatgatgttaagcaaacattatcttaaggttgatttggaaacagcaagagccattgacaaacctcaggagatactagatgttggttatcagcattaatgaatttcgaccatggttttctactatgcctgcatatgtatatgtaagtgttatacttctgaatcttcccgttcaaaaccaatatctaaaagcatggcaacgtacctcccaacaagagcttcaagctgaggatcaagctcaatatggtacttgttcaaataagcatttagtgcttctgttccaagtacctgagaatgatggggaaaacacatggatcagataccaatatttcacatatagctgttttattgttattccaaaataagcacttatataaaccactaaaacagatcaagaataaaatttgcatagatatcaaagtacattatgacatctgccttagtccgatatcaatagcataatgctggaaaagtacttagttttcaactgatgacaagcgaatcaacactgctgacacacactcgaggcattattggatgcttaaaacatctttaaatgccaataaccgtcctagtaagagttcgagagcaacaaataagaacttcaaaaatcacaatttacaaatgaacataatttattttgacgacatcacactgcttatatgtcagaataacatatgagtactaagctaaaaggagcacaaacagcaattttttttagaaacaaagtaaaacatgtataccaaccagtccaaaacacgagttgcataactaaacattttatcaggcataccaaaccattttttttcccttgagaaatgtgagaggccagaatcaaactgggacttacctttgcgatcttgacaagttgatcatggttatcatgaccatagaagaatggctccttgcggaatatctgcatcatagcatacagttaactgagttcagacgtcagacttattatcaatacaatagtacattagatatccagacattgacctagacaggcgatattttttacagccacacataccatcccagcaaacatgcaaccaaggctccacatgtccaaagaataatcataatcttgcaaatcaacaagaagctcaggccccttgaaatacctgaataaaaacgagaaaccatatgctcaactcaggtaccaaagcaaaaatgagcaaagaattgacgcattagtaagcaataattgcatgatctattccagtgataacatgcttacaaaaataataaagtcctagtaatggtatctgttttattgccttttttcagacgtacacccaataattgcatgatatactccagtgataacatgcttacaaaaataataaagggctagtaatggtatctgttttattgcctttttttcagacgtaaacttagttgtttaagggtaaacagcttcattgcttaactttcagcatttcgtaacattaatgttgcaaaaggaccactaggcaattcagacttcaacagtagcagtgaattcaaaccaagtaatttatcggttcacgtattgcttctagagccaagttagcaaacaaactgcaaaacagggatgctaccttcttaagttagcttcctctcatgattcaagtgattatcagggtgcaatccaattcaataaaaaagcaagaaaatcataaccaaacaagtagtttgcttgtaactacaccaaccttgaagcaacacgaacattatattccttccctggatgatagaactcagccaggccccagtctatcaatcgaagttttcggagctcatgatctatcataacattgtggggcttgacatctcgatgcataatgccttgtgaatggcagtagtctaatgcctggggccataaacagaaggaaaatattgtaaagaaaatcaactagattctttaaacaaacttaacacacaggattaagggcaaatgatgctactgttcttggctaagaatatcgatatgaaaaacacacactgtgtgttaacagtttattacccatggatagaaggcatgacctagcacatacgttaagatgcccattgatggctgaattcttaacaccaacatagtgctgaacttagaaatgtataaaacgacacttctcttcaaaatcccagatcataaaccattatagcacatatgcaattcaggaattcttttgtcatctgtacattatgaagtgcaagatgctactataattaaaactcaaaacaaaactgatccataaactgcttgagattgtgacaagttttaagccatgtaacttagaaaataatcaagttcatatatacataaataattaaagatatgttgcaacttgcaagcagtgagaatggtgatatttgtctaggatatattacaagtgtgtttagttggatcttcacataataggaaagtaattgtgaaacaatttctataagagatacatcattctacagatccacagaacaggatgttttactgaatagagtaaataaatagggatgacaatgaaggctcaatgaagaccttgagtagctcatatatgtagtagcggatatcataatctgtcaacgtggggtacagcactttgaagtctgtattgttgacatattcaaagatcaagctaggagtcttagaatgttgatctctgacaatatcaagaagcttcacaatgtttggacctccacaaagattctgaagtattttaatctcccttttgatctgttcaaacatatgaaaggtaggttaagaacttcaacactagcaattaaaaaaaacagtcaataagatcaattaaataccttctttttcttcacaggcttgagtatcttgatgatgcatttctcattgttgttaacattgatgccttcaaagacttcactatatttacctcttccaactttcctgacaacttcatagtcatcctgctcactgttaaagatgcaccataatagttagcgaggtattgtgtaagtcataacatgctgccaggtccctcaatgacttgaggtaacaagaattaaatggacaaaagatgggagatatatggcaattcttagtgttggtgtgtaaactgaacaaacttcgaagaaagctcaattcttaacaagtatttaacatcaggtcagggaaaacaccactgctttctatagtttctcataaagttcaagcagacaagggatcatcaatgagctacatattgttcatctcttcttttatttttcttttttttttgtcaccagacaacttatttaataattcaccatagataaggaatacatctagaggaaacacaactggtaacagagtcagattgagaaaaacagtgcacttttggagtaccaaaattaaacaagcacactcctaccaggcctcaactgtcatctaggtagcatgacatgtacagaatatactagggctgtaacttctacagggaaaagaagatgggttgttaaggacagtattatatgtgttgagttgtttggcaccatattactcagcatgttacaatcatataggtagaaacgaagttatatttgatttcattgattgctttcaggtagtatattctagggtgagtgaaggaaaacacaatgttaaatttgagattacataaaagcatagaacttggtgaatgttcagtgctaaagaagattaggcccaaagcactatactaccaagttatgctttactcatcaatcttggttatcagatgatgcaaaagaaacacccagaaacccatcaccaacttactttgttccaatgattaaacataaaactgcctaattttgccttaacttagattttatccccaacaaaaataggatcaatacctacagcttgccattcacaatcaaacaaaggctcttaactgaacaacactagtatcaactttaaaaggaagatatagtgagattgattccaaaattaaaatcataaccttgcaaattcataacaatttcttcaaccattcggtaaacatgtgtcccctactcctatagtacaaacatgtaaaactaccaaagcagtcttcggtattgagttcgtcctaatagaaacagaagcaattcaatctaaccttcaagctacaataaattcccaattccctgaccaaaaccaaaatctacaggcacaagcaaacctacgcataacccaataatccaacctaatcccaataagcaaacccagcccaggtgtacgggatacggatcgcgaactaaatctggagaatacaagctacggccgctgatcagggggctcaggaaggtgacgtcagctggctggctgtgctacctacccccattgaacggtgagcgcctcgtagtcccagtactccttggggcgcagcacgttgacgtcggcgtagaccctcgccttcgacatgccgaccctggatcccgcggcgaccggggcgcgccggggcggctgcagcagggcgaggaaggaggacgcgagggcggctgcgatcactgccgccgcggcggcgggcacggcgacgctgctgctgggtgggtgcgggcggctcctcggcggaggcgcatcggtcatgcggccattgccggcggcgaggtcgcgctagggtttcgggggtgggggagagagaatattttcgggagctttgttttttttttatttcacgtggagatagatagaggcggcgtgggacg
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| CDS seq | atgtcgaaggcgagggtctacgccgacgtcaacgtgctgcgccccaaggagtactgggactacgaggcgctcaccgttcaatggggtgagcaggatgactatgaagttgtcaggaaagttggaagaggtaaatatagtgaagtctttgaaggcatcaatgttaacaacaatgagaaatgcatcatcaagatactcaagcctgtgaagaaaaagaagatcaaaagggagattaaaatacttcagaatctttgtggaggtccaaacattgtgaagcttcttgatattgtcagagatcaacattctaagactcctagcttgatctttgaatatgtcaacaatacagacttcaaagtgctgtaccccacgttgacagattatgatatccgctactacatatatgagctactcaaggcattagactactgccattcacaaggcattatgcatcgagatgtcaagccccacaatgttatgatagatcatgagctccgaaaacttcgattgatagactggggcctggctgagttctatcatccagggaaggaatataatgttcgtgttgcttcaaggtatttcaaggggcctgagcttcttgttgatttgcaagattatgattattctttggacatgtggagccttggttgcatgtttgctgggatgatattccgcaaggagccattcttctatggtcatgataaccatgatcaacttgtcaagatcgcaaagttcttatttgttgctctcgaactcttactaggacggcatagtagaaaaccatggtcgaaattcattaatgctgataaccaacatctagtatctcctgaggctgtagattttcttgataagcttctacgttatgatcaccaagataggctcactgcacgtgaagctatggcacatccgtacttcctccaagtgagagctgcagaaaAtagcagagcacgaccacaatga
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| Protein seq | MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKFLFVALELLLGRHSRKPWSKFINADNQHLVSPEAVDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRARPQ |
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| Function | Casein kinase II subunit alpha-2 [UniProtKB/Swiss-Prot:B6F107] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0035510 | OsLima_03g0035510.02 | Chr03 | 34649489 | 34655168 | - | NAM | ||
| CDS seq | atgtcgaaggcgagggtctacgccgacgtcaacgtgctgcgccccaaggagtactgggactacgaggcgctcaccgttcaatggggtgagcaggatgactatgaagttgtcaggaaagttggaagaggtaaatatagtgaagtctttgaaggcatcaatgttaacaacaatgagaaatgcatcatcaagatactcaagcctgtgaagaaaaagaagatcaaaagggagattaaaatacttcagaatctttgtggaggtccaaacattgtgaagcttcttgatattgtcagagatcaacattctaagactcctagcttgatctttgaatatgtcaacaatacagacttcaaagtgctgtaccccacgttgacagattatgatatccgctactacatatatgagctactcaaggcattagactactgccattcacaaggcattatgcatcgagatgtcaagccccacaatgttatgatagatcatgagctccgaaaacttcgattgatagactggggcctggctgagttctatcatccagggaaggaatataatgttcgtgttgcttcaaggtatttcaaggggcctgagcttcttgttgatttgcaagattatgattattctttggacatgtggagccttggttgcatgtttgctgggatgatattccgcaaggagccattcttctatggtcatgataaccatgatcaacttgtcaagatcgcaaaggctgtagattttcttgataagcttctacgttatgatcaccaagataggctcactgcacgtgaagctatggcacatccgtacttcctccaagtgagagctgcagaaaAtagcagagcacgaccacaatga
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| Protein seq | MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKAVDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRARPQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0035510 | OsLima_03g0035510.01 | Chr03 | 34649489 | 34655168 | - | NAM | ||
| CDS seq | atgtcgaaggcgagggtctacgccgacgtcaacgtgctgcgccccaaggagtactgggactacgaggcgctcaccgttcaatggggtgagcaggatgactatgaagttgtcaggaaagttggaagaggtaaatatagtgaagtctttgaaggcatcaatgttaacaacaatgagaaatgcatcatcaagatactcaagcctgtgaagaaaaagaagatcaaaagggagattaaaatacttcagaatctttgtggaggtccaaacattgtgaagcttcttgatattgtcagagatcaacattctaagactcctagcttgatctttgaatatgtcaacaatacagacttcaaagtgctgtaccccacgttgacagattatgatatccgctactacatatatgagctactcaaggcattagactactgccattcacaaggcattatgcatcgagatgtcaagccccacaatgttatgatagatcatgagctccgaaaacttcgattgatagactggggcctggctgagttctatcatccagggaaggaatataatgttcgtgttgcttcaaggtatttcaaggggcctgagcttcttgttgatttgcaagattatgattattctttggacatgtggagccttggttgcatgtttgctgggatgatattccgcaaggagccattcttctatggtcatgataaccatgatcaacttgtcaagatcgcaaagttcttatttgttgctctcgaactcttactaggacggcatagtagaaaaccatggtcgaaattcattaatgctgataaccaacatctagtatctcctgaggctgtagattttcttgataagcttctacgttatgatcaccaagataggctcactgcacgtgaagctatggcacatccgtacttcctccaagtgagagctgcagaaaAtagcagagcacgaccacaatga
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| Protein seq | MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKFLFVALELLLGRHSRKPWSKFINADNQHLVSPEAVDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRARPQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0035510 | OsLima_03g0035510.03 | Chr03 | 34649489 | 34655121 | - | IsoSeq | ||
| CDS seq | atgactatgaagttgtcaggaaagttggaagaggtaaatatagtgaagtctttgaaggcatcaatgttaacaacaatgagaaatgcatcatcaagatactcaagc |
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| Protein seq | MTMKLSGKLEEVNIVKSLKASMLTTMRNASSRYSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| MX | Chr03 | 34650635 | 34651357 | - | OsLima_03g0035510.03 | OsLima_03g0035510.03,OsLima_03g0035510.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.683362 | 0.465095 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0763000 | SBH | 2.830820 | 2.732396 | 3.897912 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g55389 | RBH | 0.103695 | 0.543562 | 1.021000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0763000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035670 | RBH | 3.117727 | 19.280519 | 14.797595 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035340 | RBH | 0.318669 | 8.636811 | 7.330666 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035430 | RBH | 2.946886 | 51.008430 | 26.976833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035730 | RBH | 0.307471 | 1.216192 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035250 | RBH | 19.327316 | 42.350773 | 37.144970 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0538200 | RBH | 22.9106405 | 50.410673 | 32.6773225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035040 | RBH | 1.127540 | 4.076485 | 3.451841 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0538100 | RBH | 24.0348835 | 42.2727985 | 47.2420005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0000980 | RBH | 0.959614 | 0.408768 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035540 | RBH | 1.794813 | 49.909401 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035200 | RBH | 6.026178 | 56.617912 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035270 | RBH | 2.843492 | 3.395498 | 3.571573 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035220 | RBH | 1.149761 | 14.564241 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035040 | RBH | 1.819411 | 8.326234 | 9.506146 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034860 | RBH | 4.283946 | 41.497295 | 19.602373 |
