Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g55389 | OGI:03088350 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:31508811-31514460 | ||||||||
| Gene Symbol | HD6, Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha, CK2 | ||||||||||
| DNA seq | TTGTTATGGTAAAACATTACAGAAATAAATAATTATGTGCATGTCACGGCATTCATCAAACGCAACCAACGGAGTGAATTACAGTTTACAAATGCAAGGCTACAAGCACATTCCACGATCGTTCACACAAACTCAAAGTAGTACCGTCGTGGATCATCAGCTGGATCATCATTTTAGCAGGTACACAAGATCATTGTGGTCGTGCTCTGCTATTTTCTGCAGCTCTCACTTGGAGGAAGTACGGATGTGCCTGCAAGTATTCATGATTATGGCATTAATTTGAGAAGTCCAAGAGTAATCAAATAACAATTTGTTCCTCCTACAACTGGCCAGATACTATGTGAAGATGAAACGTTGTTCATTGCATACAAAAGCCAATGTGGCAGAGAAATTTGAAGGGTTTCTATCTATTGCCAAATGCACCATTTGCCAAATTATATTGGGTTGAAGTTAGCGATGCGAGTAAGCAATCCTGTTACCTGCATAAATACCTACAACAATTGAACTAGAATTGAGATAAACAGGCAAAAAATAACCGATTGCCCGCTCCACTTGCATCCCTAGTTGAAGTGTACCTATACAAATGCATAACTTGCCAACTATTTTTGGTTGAGGGTCAGGAAAATGTTTTATGATATTGTCATAATACAGAGCAATAAGTGAAACAGAATATGCCTAAAATAAAAATTGAACAGAGGTGTGATAGGATAGGAAGATGAAAGTACTATTATGACATCATTGATGTAATTCTTATGACTAAAAAGGAGGATATATACTAAAATATTCAGCAATAAACTAACAATCTCAGTGAACAGTCAATACTGTTACATAAATAGGAAATATCCAGTCAAACAAAATCAGTATCTTCTTGGAATGTAACAAATATTATCTGTCGGGGTAGACTTACCATAGCTTCACGTGCAGTGAGCCTATCTTGGTGATCATAACGTAGAAGCTTATCAAGAAAATCTACAGCCTACAAATGTACAAGCATGATGTTAAGCAAACATTATCTTAAGGTTGATTTGGAAACAGCAAGAGCCATTGACAAACCTCAGGAGATACTAGATGTTGGTTATCAGCATTAATGAATTTCGACCATGGTTTTCTACTATGCCTGCATATGTATATGTAAGTGTTATACTTCTGAATCTTCCCGTTCAAAACCAATATCTAAAAGCATGGCAACGTACCTCCCAACAAGAGCTTCAAGCTGAGGATCAAGCTCAATATGGTACTTGTTCAAATAAGCATTTAGTGCTTCTGTTCCAAGTACCTGAGAATGATGGGGAAAACACATGGATCAGATACCAATATTTCACATATAGCTGTTTTATTGTTATTCCAAAATAAGCACTTATATAAACCACTAAAACAGATCAAGAATAAAATTTGCATAGATATCAAAGTACATTATGACATCTGCCTTAGTCCGATATCAATAGCATAATGCTGGAAAAGTACTTAGTTTTCAACTGATGACAAGCGAATCAACACTGCTGACACACACTCGAGGCATTATTGGATGCTTAAAACATCTTTAAATGCCAATAACCGTCCTAGTAAGAGTTCGAGAGCAACAAATAAGAACTTCAAAAATCACAATTTACAAATGAACATAATTTATTTTGACGACATCACACTGCTTATATGTCAGAATAACATATGAGTACTAAGCTAAAAGGAGCACAAACAGCAATTTTTTTTAGAAACAAAGTAAAACATGTATACCAACCAGTCCAAAACACGAGTTGCATAACTAAACATTTTATCAGGCATACCAAACCATTTTTTTTCCCTTGAGAAATGTGAGAGGCCAGAATCAAACTGGGACTTACCTTTGCGATCTTGACAAGTTGATCATGGTTATCATGACCATAGAAGAATGGCTCCTTGCGGAATATCTGCATCATAGCATACAGTTAACTGAGTTCAGACGTCAGACTTATTATCAATACAATAGTACATTAGATATCCAGACATTGACCTAGACAGGCGATATTTTTTACAGCCACACATACCATCCCAGCAAACATGCAACCAAGGCTCCACATGTCCAAAGAATAATCATAATCTTGCAAATCAACAAGAAGCTCAGGCCCCTTGAAATACCTGAATAAAAACGAGAAACCATATGCTCAACTCAGGTACCAAAGCAAAAATGAGCAAAGAATTGACGCATTAGTAAGCAATAATTGCATGATCTATTCCAGTGATAACATGCTTACAAAAATAATAAAGTCCTAGTAATGGTATCTGTTTTATTGCCTTTTTTCAGACGTACACCCAATAATTGCATGATATACTCCAGTGATAACATGCTTACAAAAATAATAAAGGGCTAGTAATGGTATCTGTTTTATTGCCTTTTTTTCAGACGTAAACTTAGTTGTTTAAGGGTAAACAGCTTCATTGCTTAACTTTCAGCATTTCGTAACATTAATGTTGCAAAAGGACCACTAGGCAATTCAGACTTCAACAGTAGCAGTGAATTCAAACCAAGTAATTTATCGGTTCACGTATTGCTTCTAGAGCCAAGTTAGCAAACAAACTGCAAAACAGGGATGCTACCTTCTTAAGTTAGCTTCCTCTCATGATTCAAGTGATTATCAGGGTGCAATCCAATTCAATAAAAAAGCAAGAAAATCATAACCAAACAAGTAGTTTGCTTGTAACTACACCAACCTTGAAGCAACACGAACATTATATTCCTTCCCTGGATGATAGAACTCAGCCAGGCCCCAGTCTATCAATCGAAGTTTTCGGAGCTCATGATCTATCATAACATTGTGGGGCTTGACATCTCGATGCATAATGCCTTGTGAATGGCAGTAGTCTAATGCCTGGGGCCATAAACAGAAGGAAAATATTGTAAAGAAAATCAACTAGATTCTTTAAACAAACTTAACACACAGGATTAAGGGCAAATGATGCTACTGTTCTTGGCTAAGAATATCGATATGAAAAACACACACTGTGTGTTAACAGTTTATTACCCATGGATAGAAGGCATGACCTAGCACATACGTTAAGATGCCCATTGATGGCTGAATTCTTAACACCAACATAGTGCTGAACTTAGAAATGTATAAAACGACACTTCTCTTCAAAATCCCAGATCATAAACCATTATAGCACATATGCAATTCAGGAATTCTTTTGTCATCTGTACATTATGAAGTGCAAGATGCTACTATAATTAAAACTCAAAACAAAACTGATCCATAAACTGCTTGAGATTGTGACAAGTTTTAAGCCATGTAACTTAGAAAATAATCAAGTTCATATATACATAAATAATTAAAGATATGTTGCAACTTGCAAGCAGTGAGAATGGTGATATTTGTCTAGGATATATTACAAGTGTGTTTAGTTGGATCTTCACATAATAGGAAAGTAATTGTGAAACAATTTCTATAAGAGATACATCATTCTACAGATCCACAGAACAGGATGTTTTACTGAATAGAGTAAATAAATAGGGATGACAATGAAGGCTCAATGAAGACCTTGAGTAGCTCATATATGTAGTAGCGGATATCATAATCTGTCAACGTGGGGTACAGCACTTTGAAGTCTGTATTGTTGACATATTCAAAGATCAAGCTAGGAGTCTTAGAATGTTGATCTCTGACAATATCAAGAAGCTACACAATGTTTGGACCTCCACAAAGATTCTGAAGTATTTTAATCTCCCTTTTGATCTGTTCAAACATATGAAAGGTAGGTTAAGAACTTCAACACTAGCAATTAAAAAAAACAGTCAATAAGATCAATTAAATACCTTCTTTTTCTTCACAGGCTTGAGTATCTTGATGATGCATTTCTCATTGTTGTTAACATTGATGCCTTCAAAGACTTCACTATATTTACCTCTTCCAACTTTCCTGACAACTTCATAGTCATCCTGCTCACTGTTAAAGATGCACCATAATAGTTAGCGAGGTATTGTGTAAGTCATAACATGCTGCCAGGTCCCTCAATGACTTGAGGTAACAAGAATTAAATGGACAAAAGATGGGAGATATATGGCAATTCTTAGTGTTGGTGTGTAAACTGAACAAACTTCGAAGAAAGCTCAATTCTTAACAAGTATTTAACATCAGGTCAGGGAAAACACCACTGCTTTCTATAGTTTCTCATAAAGTTCAAGCAGACAAGGGATCATCAATGAGCTACATATTGTTCATCTCTTCTTTTATTTTTCTTTTTTTTTTGTCACCAGACAACTTATTTAATAATTCACCATAGATAAGGAATACATCTAGAGGAAACACAACTGGTAACAGAGTCAGATTGAGAAAAACAGTGCACTTTTGGAGTACCAAAATTAAACAAGCACACTCCTACCAGGCCTCAACTGTCATCTAGGTAGCATGACATGTACAGAATATACTAGGGCTGTAACTTCTACAGGGAAAAGAAGATGGGTTGTTAAGGACAGTATTATATGTGTTGAGTTGTTTGGCACCATATTACTCAGCATGTTACAATCATATAGGTAGAAACGAAGTTATATTTGATTTCATTGATTGCTTTCAGGTAGTATATTCTAGGGTGAGTGAAGGAAAACACAATGTTAAATTTGAGATTACATAAAAGCATAGAACTTGGTGAATGTTCAGTGCTAAAGAAGATTAGGCCCAAAGCACTATACTACCAAGTTATGCTTTACTCATCAATCTTGGTTATCAGATGATGCAAAAGAAACACCCAGAAACCCATCACCAACTTACTTTGTTCCAATGATTAAACATAAAACTGCCTAATTTTGCCTTAACTTAGATTTTATCCCCAACAAAAATAGGATCAATACCTACAGCTTGCCATTCACAATCAAACAAAGGCTCTTAACTGAACAACACTAGTATCAACTTTAAAAGGAAGATATAGTGAGATTGATTCCAAAATTAAAATCATAACCTTGCAAATTCATAACAATTTCTTCAACCATTCGGTAAACATGTGTCCCCTACTCCTATAGTACAAACATGTAAAACTACCAAAGCAGTCTTCGGTATTGAGTTCGTCCTAATAGAAACAGAAGCAATTCAATCTAACCTTCAAGCTACAATAAATTCCCAATTCCCTGACCAAAACCAAAATCTACAGGCACAAGCAAACCTACGCATAACCCAATAATCCAACCTAATCCCAATAAGCAAACCCAGCCCAGGTGTACGGGATACGGATCGCGAACTAAATCTGGAGAATACAAGCTACGGCCGCTGATCAGGGGGCTCAGGAAGGTGACGTCAGCTGGCTGGCTGTGCTACCTACCCCCATTGAACGGTGAGCGCCTCGTAGTCCCAGTACTCCTTGGGGCGCAGCACGTTGACGTCGGCGTAGACCCTCGCCTTCGACATGCCGACCCTGGATCCCGCGGCGACCGGGGCGCGCCGGGGCGGCTGCAGCAGGGCGAGGAAGGAGGACGCGAGGGCGGCTGCGATCACTGCCGCCGCGGCGGCGGGCACGGCGACGCTGCTGCTGGGTGGGTGCGGGCGGCTCCTCGGCGGAGGCGCATCGGTCATGCGGCCATTGCCGGCGGCGAGGTCGCGCTAGGGTTTCGGGGGTGGGGGAGAGAGAATATTTTCGGGAGCTTTGTTTTTTTTTTATTTCACGTGGAGATAGATAGAGGCGGCGTGGGACG
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| CDS seq | ATGCATCGAGATGTCAAGCCCCACAATGTTATGATAGATCATGAGCTCCGAAAACTTCGATTGATAGACTGGGGCCTGGCTGAGTTCTATCATCCAGGGAAGGAATATAATGTTCGTGTTGCTTCAAGGTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTCTTTGGACATGTGGAGCCTTGGTTGCATGTTTGCTGGGATGATATTCCGCAAGGAGCCATTCTTCTATGGTCATGATAACCATGATCAACTTGTCAAGATCGCAAAGGTACTTGGAACAGAAGCACTAAATGCTTATTTGAACAAGTACCATATTGAGCTTGATCCTCAGCTTGAAGCTCTTGTTGGGAGGCATAGTAGAAAACCATGGTCGAAATTCATTAATGCTGATAACCAACATCTAGTATCTCCTGAGGCTGTAGATTTTCTTGATAAGCTTCTACGTTATGATCACCAAGATAGGCTCACTGCACGTGAAGCTATGGCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGACCACAATGA
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| Protein seq | MHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTEALNAYLNKYHIELDPQLEALVGRHSRKPWSKFINADNQHLVSPEAVDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRARPQ |
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| Function | Casein kinase II subunit alpha-2 [UniProtKB/Swiss-Prot:B6F107] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g55389 | LOC_Os03g55389.1 | Chr03 | 31508811 | 31514460 | - | MSU_osa1r7 | ||
| CDS seq | ATGCATCGAGATGTCAAGCCCCACAATGTTATGATAGATCATGAGCTCCGAAAACTTCGATTGATAGACTGGGGCCTGGCTGAGTTCTATCATCCAGGGAAGGAATATAATGTTCGTGTTGCTTCAAGGTATTTCAAGGGGCCTGAGCTTCTTGTTGATTTGCAAGATTATGATTATTCTTTGGACATGTGGAGCCTTGGTTGCATGTTTGCTGGGATGATATTCCGCAAGGAGCCATTCTTCTATGGTCATGATAACCATGATCAACTTGTCAAGATCGCAAAGGTACTTGGAACAGAAGCACTAAATGCTTATTTGAACAAGTACCATATTGAGCTTGATCCTCAGCTTGAAGCTCTTGTTGGGAGGCATAGTAGAAAACCATGGTCGAAATTCATTAATGCTGATAACCAACATCTAGTATCTCCTGAGGCTGTAGATTTTCTTGATAAGCTTCTACGTTATGATCACCAAGATAGGCTCACTGCACGTGAAGCTATGGCACATCCGTACTTCCTCCAAGTGAGAGCTGCAGAAAATAGCAGAGCACGACCACAATGA
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| Protein seq | MHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTEALNAYLNKYHIELDPQLEALVGRHSRKPWSKFINADNQHLVSPEAVDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRARPQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.103695 | 0.543562 | 1.021000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0763000 | SBH | 2.830820 | 2.732396 | 3.897912 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02350 | RBH | 4.440914 | 4.826646 | 3.528938 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0763000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035750 | SBH | 1.053877 | 5.111952 | 4.012838 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035420 | SBH | 0.492634 | 1.538856 | 1.888766 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035510 | SBH | 1.610408 | 3.180741 | 7.368580 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035810 | SBH | 0.040705 | 0.077716 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035330 | SBH | 8.009788 | 2.273269 | 10.082131 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0538200 | RBH | 22.9106405 | 50.410673 | 32.6773225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035120 | SBH | 0.643391 | 0.366083 | 1.231520 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0538100 | RBH | 24.0348835 | 42.2727985 | 47.2420005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035510 | RBH | 0.683362 | 0.465095 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035620 | SBH | 0.748376 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035280 | SBH | 4.487675 | 8.313689 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035340 | SBH | 0.850631 | 0.471482 | 1.211422 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035300 | SBH | 0.267623 | 1.363279 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035120 | SBH | 0.577867 | 3.619794 | 1.863277 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034930 | SBH | 3.379735 | 6.055433 | 6.810257 |
