Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_03G035120 | OGI:03088560 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr03:34149391-34153810 | ||||||||
| Gene Symbol | HD6, Hd6(t)*, OSCKA2, OsCKA2, CKA2, OsCKA2-1, CKA2-1, Hd6/CK2alpha, CK2alpha, CK2, OsCKA2-4, CKA2-4, OspCKII | ||||||||||
| DNA seq | GAGCTGAGCGGCGTAGGTCGCGGAGACCAACCCACCCATCCCTCGCGCCGGAAGAGAGGTACATGGCCTGGTGCGCCGCGCGCAGCCGCCTCCTCCCCCTCGCCACCGCGCCGCAGCTGCTCCGCCGCCTCCTCCTCTCCTCCGCCGCGGCCCCGCGCTACGCGCACCCCCACCACCACCACAGCAACAGCCGCCGCCGCCGCCGCCCCCTCGCCCCCACCGTCTACGCCGCTGCCGCGGCAGCCGCAGCCGAGGCGCCGCTCCCCATGCCGCCGCGCATCGGCCGCGCCACGCGGCACCCCGGGGGCGCCGCCTCCGTGGCGCGCGTCTACGCCGACGCCAACTCCCAGCGGCCCAAGGAGTACTGGGACTACGAGTCGCTCGACATCGAGTGGGGGTATGTATGAGCCATGGTGGTGGCGGGGGAGCTGATCTCGAACCTCCAGATTTGGGGGCTAGGGTTTGTGCTCTAATGGGGATGCACTTTGTTGTGCGTGTGTGTAGGGAGCAGGATGGGTACGAGGTGCTGCGCAAGCTTGGGAGGGGGAAGTACAGCGAGGTGTTCGAGGGATTCCGGCCCGGGGGTGACGAGAGGTGCGTTATTAAGATCCTCAAGCCCGTCAAGAAGAAAAAGGTAGGCTTTGCCCTCATCAAAATGTAGTATGCCTCTGCGGTGGAACTTTCAATTGTATGGTTCAAATTTAGCTTCCCCACAGATGTCTCAGTAATATTTATCATTTCTGTTAGACTTACATTGCCTGCTTGAGGAATCTAGGGTACACATGAGCATTAGGAAATGCAGTTTAGGCTGATTCCTCAGCTGGTCGTAGGAGTTTGGGATGATGTGGCTCCATGAGTGTTATTTTGCCTTGTGTGATAAACAAAATCAGTAGAAAAACTTGTCACTTTCAAATCTTATCGATGTTAAGTCTTATTAGAGGAAAGTGTAGTTCAATGAGGTAGGTGTTATGTTTTTTGCTTGGTTGCATAGTGTTCTCGTTGCATCTTTTACTATAGTTCATGTGTATTCTTAGCAATCCTTACTGAATTCTTTTATGATGATGCAGATAAAGAGGGAAATAAAGATACTTCAAAACTTATATGGCGGACCGAATATTGTAAAGCTACTTGATGTTGTCAGGGATGATGAATCGAAGACACCTAGTTTGATCTTTGAATATGTCAACAATACTGATTTCAAAGTACTCTACCCAACACTATTGGATTACGATATCAGATACTACATTTATGAATTATTAAAGGTAATAATCTGAATTGCAGAATCCTATGTCTGTAATAATCAATGTTTTTATTTATGCTATCTTGTCTATGGAACATTTCTTTGTACTGATAGTATTTTGAGAATTTTACATGCTTGGTTCTAATTTCTAAGAATGTATCATATCATTAGGAGTTTGGTACCAACTTGTCAGATATAATCCACTGCTTATGTATTTTTCTTCAAACATCACAATGGATCGTAGGAGGTTACGGAGTAAAATAATGGGACTGAAATCTATGCTCATGTATACTGTATGCTGATAAATAATTAATTTAAATTGTCATGGTAGTTTTTATTCCTAGATACCTTTCCTGTTTAAAGCTCATATGCATAGAAAGTGGTATGATGGATGGGTCGATTGCGTCAATATGACTTGGACAAGGTTTGGAAGATAAAACGATAGTTTGCCTACATGACAATGATGTAACACATCTGTTCGGGAAGTTGGGGTTATGTTCCTATCGATTGAGGCGCGTGTGCAAGCACCCAGAAAGAAGTTTTGCTTAAAAAAAATGTAAAAGGGGAACAATCTTCAATGGCCGTGCAAGCAATCATCATTAATAAACCTCTGGTTGAATTAATCATGACATTTTGAATAACCTGTCTATTGGAGCCAGCCTTGTAAATTCTAGCGAGTTCAAATTAATTAAATCAATACTAGAGAATAAATAGTAGTAAATAAGATTAGCACGGGGTATCTACTACACAACATCAACTACATTACTTCTTAATTTTTCTTCGAAATCTATTCTGTAGCATTTTCTGACCTGTAGGTTATCTGTCCGACCAGTCTCTTTAGTAATGTAAGCATGACATTTGGCAGGCTTTTACCGTGATGTCTTTTGGCCAAAGTTTGCATCGTGTAAACTTAACTTGCCAACGATAAGGACAATCACAGTGCACTATGCAGACATTTGAGTTTATTGCAAATTATCTGTAATGCTTCTTGGTTCTCCTGTTTTGAAACTTTCAAAGAGAGTGAACATACTACCGTTTATATGTATTTTATAACTGTGATAGATATCAGAAGAGACCATATTTCACATATTCATAAGCAGTGAGAATGAAATTAGTTCACTTGATTTATTTTGGAAGAACCATAAAAGGCAACAGTTGATGTTGTCAAGTTTTGGTATTTTTCACATCTTTTTTGTTCTGTGGGACTACTTCTGCCAGATTAAATTCTGCAAACCAGATTCCCATGTTCTCGATTAATGTGCTAACGCGGTTTACAATCAAGCCCTCATCCTATTTACATCAGAGATCAGACTACCTTCATTTTGATGGTCTTTAACTTATCCAGGTGTGTCTGTAGGCACTAGATTATTGTCATTCACGAGGCATCATGCATCGAGATGTCAAACCTCACAATATCATGATTGATCATGAGAAACGCCAGCTTTGTCTTATTGATTGGGGTCTAGCAGAGTTCTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAGGTTAGTCTCCCTTGCATTGGAAGTTCAATGTTTCAGACTTGTTCAGCTTATTAAGAAGGAACTTCACTTGCATGCCTAACCCTCTGAGATCCTTTTATGTTGGATCTGTATTTGAGGAAATTTCAAGATCTCTTTTCCATAACTCAATGGAAAGGGTCATGCAGGGAGTGAGATTCACTTCATTGTATGGTACCATTCACATATAGTTATAGGATAATTTCATTTACAGCAAGCTTTCTTAATAATTTCATTATTCCCCACTCAAGCTGATCCAGTCGGTTGCTATTCTATAGTATCTTCTGTAAATTTCCCATCCTTGACTTACTGCATGTGTGTGCTCTCGTGCTGTGTTATTGACAGATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTCGTTGGATTTGTGGAGCCTTGGTTGCATGTTTGCCGCAATGGTAAGTGCAAGTTTAGGGTCAGCCATTTATCTATCAATAATTTATTGATATACATTATGGTAATCTTAACAGATATTCCGAGTCGACCCTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAGGTATGTCTGTCCGTAGCTTCTTAAACTTCTAAGTATTTCTGGCAGCTTTCTTGTGTTGATTTATGCTTGACTTGTGCTTTGGGACATGTTTAGCTAGGGTTATCTTTAAATTTAGTAAGATTTTCTGTTATAGCTCTAACAGAAATGCTTTAGCTACCTACTGAATTGAAGTAGGAACATTTTCTATTTGGTAACTGTGACCAAACCACTACGTATACAGATGTTTACCTGCCTTGTGCAAAGAAGCAAGGCTTCGCAGTGCATTTTTCAGAACTGAAGCAGCTACTGATTACAAAAAAATGTTTATTGTGAATGATATATGCAATATGTCATTATCGTAGGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAGCTTGACCCGCAGCTTGAAAGACTTGTTGGAAGGTCATGCATTACTTTGGATAATCTTAAATATACATCATTCTCATAACTTAGCATGATCTAACTGAATATTATTTGCTGCAGACATAATAGGAAGTCATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGGTGATTTGTGTTGCCTTTCAATCAACCTACTGGCTTAGTCATCTCTTATTTGATGTATTTTGACATGTTTCTACCTATATAGGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCTACAGCAAAGGAAGCCATGGTGACAATCCCTCTCCTACTTTATAGAAGCACATGCCATAGAAATCCTAAATATATGTGCTCTAAATGCATATATTTGCTGTGTGCAGGCTCATCCATATTTCAATCCAGTGAGAAGCACTTAAAACGGCAGGAAGAGTGCCCATTAGTGGTATGCGGCATATTTGACAATTTTTGCTACGGTGTCAAATATATAGAGGGAATTTAATTTTCAAGGCTGTATGGTTTATCCAGAATAAATCCTTGACCAACATGTAACCGTCACATCATTTGTGTGAATTAATTCATTCCTCTCTGCTAACTCTGTTTTATGATCAGTTTTTATCAATAATAATTCATCTCTGCACTTTCATCACC
More
|
||||||||||
| CDS seq | ATGGCCTGGTGCGCCGCGCGCAGCCGCCTCCTCCCCCTCGCCACCGCGCCGCAGCTGCTCCGCCGCCTCCTCCTCTCCTCCGCCGCGGCCCCGCGCTACGCGCACCCCCACCACCACCACAGCAACAGCCGCCGCCGCCGCCGCCCCCTCGCCCCCACCGTCTACGCCGCTGCCGCGGCAGCCGCAGCCGAGGCGCCGCTCCCCATGCCGCCGCGCATCGGCCGCGCCACGCGGCACCCCGGGGGCGCCGCCTCCGTGGCGCGCGTCTACGCCGACGCCAACTCCCAGCGGCCCAAGGAGTACTGGGACTACGAGTCGCTCGACATCGAGTGGGGGGAGCAGGATGGGTACGAGGTGCTGCGCAAGCTTGGGAGGGGGAAGTACAGCGAGGTGTTCGAGGGATTCCGGCCCGGGGGTGACGAGAGGTGCGTTATTAAGATCCTCAAGCCCGTCAAGAAGAAAAAGATAAAGAGGGAAATAAAGATACTTCAAAACTTATATGGCGGACCGAATATTGTAAAGCTACTTGATGTTGTCAGGGATGATGAATCGAAGACACCTAGTTTGATCTTTGAATATGTCAACAATACTGATTTCAAAGTACTCTACCCAACACTATTGGATTACGATATCAGATACTACATTTATGAATTATTAAAGGCACTAGATTATTGTCATTCACGAGGCATCATGCATCGAGATGTCAAACCTCACAATATCATGATTGATCATGAGAAACGCCAGCTTTGTCTTATTGATTGGGGTCTAGCAGAGTTCTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAGATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTCGTTGGATTTGTGGAGCCTTGGTTGCATGTTTGCCGCAATGATATTCCGAGTCGACCCTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAGGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAGCTTGACCCGCAGCTTGAAAGACTTGTTGGAAGACATAATAGGAAGTCATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCTACAGCAAAGGAAGCCATGGCTCATCCATATTTCAATCCAGTGAGAAGCACTTAA
More
|
||||||||||
| Protein seq | MAWCAARSRLLPLATAPQLLRRLLLSSAAAPRYAHPHHHHSNSRRRRRPLAPTVYAAAAAAAAEAPLPMPPRIGRATRHPGGAASVARVYADANSQRPKEYWDYESLDIEWGEQDGYEVLRKLGRGKYSEVFEGFRPGGDERCVIKILKPVKKKKIKREIKILQNLYGGPNIVKLLDVVRDDESKTPSLIFEYVNNTDFKVLYPTLLDYDIRYYIYELLKALDYCHSRGIMHRDVKPHNIMIDHEKRQLCLIDWGLAEFYHPKMEYNARVASRSYKGPELLVDLLDYDYSLDLWSLGCMFAAMIFRVDPFFNGQDNYDQLVKITEVLGTEDFYNYLEKYGLELDPQLERLVGRHNRKSWSMFVNSGNRHLASPEAIDFVDRLLRYDHQERPTAKEAMAHPYFNPVRST |
||||||||||
| Function | Casein kinase II subunit alpha-4, chloroplastic [UniProtKB/Swiss-Prot:O64816] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_03G035120 | OsN22_03G035120_01 | Chr03 | 34149391 | 34153810 | + | NAM | ||
| CDS seq | ATGGCCTGGTGCGCCGCGCGCAGCCGCCTCCTCCCCCTCGCCACCGCGCCGCAGCTGCTCCGCCGCCTCCTCCTCTCCTCCGCCGCGGCCCCGCGCTACGCGCACCCCCACCACCACCACAGCAACAGCCGCCGCCGCCGCCGCCCCCTCGCCCCCACCGTCTACGCCGCTGCCGCGGCAGCCGCAGCCGAGGCGCCGCTCCCCATGCCGCCGCGCATCGGCCGCGCCACGCGGCACCCCGGGGGCGCCGCCTCCGTGGCGCGCGTCTACGCCGACGCCAACTCCCAGCGGCCCAAGGAGTACTGGGACTACGAGTCGCTCGACATCGAGTGGGGGGAGCAGGATGGGTACGAGGTGCTGCGCAAGCTTGGGAGGGGGAAGTACAGCGAGGTGTTCGAGGGATTCCGGCCCGGGGGTGACGAGAGGTGCGTTATTAAGATCCTCAAGCCCGTCAAGAAGAAAAAGATAAAGAGGGAAATAAAGATACTTCAAAACTTATATGGCGGACCGAATATTGTAAAGCTACTTGATGTTGTCAGGGATGATGAATCGAAGACACCTAGTTTGATCTTTGAATATGTCAACAATACTGATTTCAAAGTACTCTACCCAACACTATTGGATTACGATATCAGATACTACATTTATGAATTATTAAAGGCACTAGATTATTGTCATTCACGAGGCATCATGCATCGAGATGTCAAACCTCACAATATCATGATTGATCATGAGAAACGCCAGCTTTGTCTTATTGATTGGGGTCTAGCAGAGTTCTATCATCCCAAGATGGAATATAATGCTAGAGTTGCTTCAAGATCTTATAAGGGCCCTGAACTTCTTGTGGATTTGCTAGATTATGATTACTCGTTGGATTTGTGGAGCCTTGGTTGCATGTTTGCCGCAATGATATTCCGAGTCGACCCTTTCTTTAATGGTCAGGATAACTACGACCAATTAGTCAAAATTACCGAGGTTCTTGGAACAGAAGATTTCTACAATTACCTTGAAAAGTATGGTCTTGAGCTTGACCCGCAGCTTGAAAGACTTGTTGGAAGACATAATAGGAAGTCATGGTCAATGTTTGTTAACTCGGGGAACAGACACCTAGCAAGCCCTGAGGCTATTGATTTTGTAGACAGGTTGCTTCGCTACGATCACCAGGAAAGGCCTACAGCAAAGGAAGCCATGGCTCATCCATATTTCAATCCAGTGAGAAGCACTTAA
More
|
|||||||
| Protein seq | MAWCAARSRLLPLATAPQLLRRLLLSSAAAPRYAHPHHHHSNSRRRRRPLAPTVYAAAAAAAAEAPLPMPPRIGRATRHPGGAASVARVYADANSQRPKEYWDYESLDIEWGEQDGYEVLRKLGRGKYSEVFEGFRPGGDERCVIKILKPVKKKKIKREIKILQNLYGGPNIVKLLDVVRDDESKTPSLIFEYVNNTDFKVLYPTLLDYDIRYYIYELLKALDYCHSRGIMHRDVKPHNIMIDHEKRQLCLIDWGLAEFYHPKMEYNARVASRSYKGPELLVDLLDYDYSLDLWSLGCMFAAMIFRVDPFFNGQDNYDQLVKITEVLGTEDFYNYLEKYGLELDPQLERLVGRHNRKSWSMFVNSGNRHLASPEAIDFVDRLLRYDHQERPTAKEAMAHPYFNPVRST
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.577867 | 3.619794 | 1.863277 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0763000 | RBH | 2.830820 | 2.732396 | 3.897912 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g55490 | RBH | 1.950063 | 2.421573 | 1.281875 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0763000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035750 | RBH | 1.053877 | 5.111952 | 4.012838 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035420 | RBH | 0.492634 | 1.538856 | 1.888766 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035510 | RBH | 1.610408 | 3.180741 | 7.368580 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035810 | RBH | 0.040705 | 0.077716 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035330 | RBH | 8.009788 | 2.273269 | 10.082131 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0539300 | RBH | 8.8431255 | 9.085324 | 33.077743 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035120 | RBH | 0.643391 | 0.366083 | 1.231520 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0539200 | RBH | 7.772803 | 7.449307 | 17.2808205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035600 | RBH | 0.031742 | 0.079888 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035620 | RBH | 0.748376 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035280 | RBH | 4.487675 | 8.313689 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035340 | RBH | 0.850631 | 0.471482 | 1.211422 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035300 | RBH | 0.267623 | 1.363279 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000980 | SBH | 2.013873 | 18.951296 | 12.317120 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034930 | RBH | 3.379735 | 6.055433 | 6.810257 |
