Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0000980 | OGI:07002100 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:812511-818081 | ||||||||
| Gene Symbol | OsCKA2-2, CKA2-2, CK2alpha2 | ||||||||||
| DNA seq | aaaaaaaaaacatttatactcaacgagttacatgaacaatgtgtttcaatcaatcgtcagaaacaaagatacaaacaacacgagtaaatcacaatccacgtttgcggttaagcacacatgagctgttacatgctctcccagaatcctcttgccaggtgattcaaccattaccgaatctcaaactcccaatacaagtgactggactaagtcactaatacggtgcagctccatgactgctgctaatcgacagtcagcaatagtcccgttcttttgtctattgtgcacgaggcctactgttctccgcagccctcacttggagaaagtatgggtgtgcctgcaatcatccaatgttatataagtgcatggcaatggtacaccaaatcaaaggtcagagaccaataatgcccaggaacaatcgcaaaaaaaatatcatgatgttgtacactagtaaaacgcatattttgcatagaaaaaaggaaatcaaaggaagtgcagaacaagttacttaccatagcttcacgtgcagtaagtctatcctggtgatcatagcgaagaagcttgtcaaggaaatcgatggcctaacatagaaaagaaatcatgttgaaaaccattaatactttaatgacagtaggtacatttgtgataacctctgaagaaggggcactggaaatacctctggggatactagatgttggttgtcagcattaataaactttgaccaaggtttcctgctgtgcctgcatatgaaaaaaaaatgtcaaaattttaattcatattaaaactagaggtcttgcattgcatcacatataattgtaattcatataccttccaacgagggcttcaagctgtgggtcaagctcaatacggtacttgttcaagtatgaattcaggctgtctgtcccaagtacctgtgaatgcagggagtcagggaaacaacacaaataactaaagatgatttatcacatatctagctcaagttcaataagacttttactgaagcagtactcaacagaaaggaagggtgtccatagttaacgtgcaagtttgaataaaatgttagtgactaagtttgaccagaataaagttcagcggagaaaaatagttgtaactgttacttttttttctcgaacacgcaggagagcgttacaactgttgctcctgattactatcagaactaatcgcatcataacaacaaatgaaacaattcctaacatcaaacatggataacttgagctgcaaatgaaataagataaaccatagtgtacagtatgaatgataagctaaacatgaaatgcatttcattcttgtatgaacatcatcttttaacataaacaagctgagaaatcacctttgcaatcttaacaagttgatcatggttgtcatgaccatagaaaaatggctccttgcggaagatctgcactcaacaacacattattagcgaatcagcaccagttaattcttttatagaaaaaggcagttgcattacaaaattgatgaaatgagaaaaagtaatgtataaatgtcatggtaataccattccagcaaacatgcaaccaagactccacatgtccaaagagtagtcataatcttgcaagtcaacaagaagctcaggtcccttgaagtacctgaattccagtgaaacagaacatgtcaaccaaaaaaaaaagagaaagggatgcaacagggaaaatatggaatgagagtagtacaggcacagcaaacatagtagctacagaaaacattctttaaacgtgattatatgctcatgctgctggcattttcctgttcttcatagtactttaaacatcattaacgcaaacaatccaatatccgcaagaattagatttgcctattgcctcagtaaatcatcaaaacaatcatcaaataaactgcacgccagtttattctaacttaaatagttcaccaaacatactaagattaatacatgttgttaattactctataagaaaatcaaatgataaacccattaacagagcagtatgtgcccctaccttgaagcaacacggacattatattccttgccagggtggtagaattcagcaaggccccagtctattaatcggagttttcgaagctcgtgatctatcataacattgtgaggcttcacatcgcggtgcatgatgccttgtgaatggcagtaatctaaagcctgcacccatcaacagaaaagggtgttatatcataattggatcagccaaaaattgctcaaaccaaacgatgtatgacttggattctcctatagaagaaaaagaacatgatatcattgcttttatcatgggcaaagatttcttcatctcgttactagcatagaaaaagccttcatgcacacagagaagccctcagggaagaaaaatagtattaagcataagttggaactagaagttagatactatgcatatagttgcaaatttcaaagatttcatttcaacaagaacgatactctggaaaagtgctgaataagtagtttcttgttggcaatgttacagtaacaaaaaattgagaaagaataaaaccttcagtagctcgtagatataataacggatgtcataatctgtcagggttgggtatagcactttgaaatctgtgttgttgacatattcaaatatcaagcttggtgtttttgagtgctgatctctaacaatatcaagcagtttcacgatatttggacctccacaaagattctgaagtatttttatctctcttttgatctgcatacaaaagaaaactatggttaaaataataaacactaatgccattgacacaaagctaggtgtaagatggaaacagtaccatgttaccagtaaaagagcatgttcaggggaaaaggaaaaaaaggatggacaacaggattcatgaatcatgaactaccttctttttcttcacaggcttgagaattttgataatgcatttttcgttgttgttgacattaataccctcaaagacctcgctgtattttcctctcccaactttcctgacaacttcataatcatcctgctcactgctcaaagagatcataaattcagatactgttaacaggataggctgggaaaatataagtgcccagttggacattttttgtgagctcactcacagcatgaattcctaattgactggagatataagtacactattcaaaacattaagtgatgaacactggtatatttgtggggagaagacatgcgtcaagctaaagtaatcatatacaaccaaagttattttgggttgcttttagagtacatgatcttcctgttctgtctttagaaaataaagaacaagcagaaaacaccagtgccagaccgggcacttgagggtaatgtgctgttgagctataacctctaggcataatgcactacaatcaatcctgatatctatttttcaagctatacaaaggccaaagaaccaaagtactatcaggttattacacttaattcataccatatttaatccatacaagaatacagtagcaataaaaacacttcaagctaatcacatgattgccttcattcagtgataaaatacatattgacaaaggtccattgtcatggttaattaagtaaaataagtttattataacatatatagtcatttcaatggacttgattaagaatatttactaaaaaaataacatggttactctaatccttaggttgaactgttgaagaacaatccttcagcacaagccttaatgctgcacatggttgctgcccaaaatagctgttttaagaccacaggatcagtatgacccgtggactctaaacttatagagcaattgacgcatgccctggattcctattacaaagtaaattaaattgtaacaccaaatgatgagcccaattctatctaaactaaatcattcgacagattgaaactaactAaaaaacatgccctctgcgcaacatcgctaatctaacatgcaatctgaaacaatgggagttcaatgagaacgacagcagtttatgtgttattgttgcctccatgtacgtggtttagagaaatgtacttacgatgcaaacttgtagatgacaccgtaatcgcaagtcaaaaaatgggtaatttaagtagccactagtgaacagaaattattagtaagtaatcaattgtcccaatgatttcagggagtatatccattttcccaatataatatatgcgaataaaaaaaatcgcacgactcaatcaagctcgcacccaacaataccttccctggatcaccgacgtctagaattccaacagcacactccagatgcagcatccaaccctgaatctaactgaatggatgaattcaccgcatgcagatacacaggcagcaacaaatgcaggagggcctgctgcccacatgggtgggtgggtgggcgcgaagcaattgcgacgtaggacacactcacccccatcggatggtgagggcctcgtagtcccaggaccttgtttggccgcttttacagaacatgatcttcctgtcgtttcttaggaagatgaagaacaagcagtaaaccctagtaccataacaaacacttgagagggtaatatactgttgcactctagacatacagcatattgcatcacaatcaatcaggatagctgttagtcatatactagacaaaggccatggagcccagctcatatcaggttgttacacttaattatatcatctttcaccaatacaagaatacagtaccaataaaaccattccaagctaatcaggcggtttccttgatccagtgatagaatacatattagcatagatccaatttatgattatttgatgtaggagaagtttattataatctacacggtcatttcattgacatggtttaccagtgtacactaagtcgtattcttcaatttagctctgtatattgcataatccttggcttgtattgttggagtataacaaataattaattgaaatcgactgtaacaataaataagaccgagttctatctaaactaaacaatttgacagctctccgcacaagatcactaatctaacatgcaacctgaaacaatggaactccaataacaacaagagcagcagttgattcacaaacaattctatttacaatcctaataacttgatgataacaccggcgattgcaaagtcatgaaacgggtaactaaaaagctttatcatacgtatcagcacgcaacatccgacactgaatctaaactgacccacacagatgcagaggcgacaacacagggtggaagcaagagcgaggtagcgaggtaggagtgggaggcactcacccccattggacggtgagggcctcgtagtcccagtactccttggggcgcagcacgttgacgtcggtgtagaccctggccttggacatggcgccgatctgggactggatcccgcccgctgcccaggtgggggtgggcgggcacagcggtgaggcaacgacgacccgggagagcgaggcggagcggtcaggtgggggagcgcatcggcgaggcgggcgtcgccggcggcgagcctagctagggtttcgacgagggaaggggacaagacgaggaggaagagatgaatcttttttcctttttctttcttttt
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| CDS seq | atgtccaaggccagggtctacaccgacgtcaacgtgctgcgccccaaggagtactgggactacgaggccctcaccgtccaatggggtgagcaggatgattatgaagttgtcaggaaagttgggagaggaaaatacagcgaggtctttgagggtattaatgtcaacaacaacgaaaaatgcattatcaaaattctcaagcctgtgaagaaaaagaagatcaaaagagagataaaaatacttcagaatctttgtggaggtccaaatatcgtgaaactgcttgatattgttagagatcagcactcaaaaacaccaagcttgatatttgaatatgtcaacaacacagatttcaaagtgctatacccaaccctgacagattatgacatccgttattatatctacgagctactgaaggctttagattactgccattcacaaggcatcatgcaccgcgatgtgaagcctcacaatgttatgatagatcacgagcttcgaaaactccgattaatagactggggccttgctgaattctaccaccctggcaaggaatataatgtccgtgttgcttcaaggtacttcaagggacctgagcttcttgttgacttgcaagattatgactactctttggacatgtggagtcttggttgcatgtttgctggaatgatcttccgcaaggagccatttttctatggtcatgacaaccatgatcaacttgttaagattgcaaaggcacagcaggaaaccttggtcaaagccatcgatttccttgacaagcttcttcgctatgatcaccaggatagacttactgcacgtgaagctatggcacacccatactttctccaagtgagggctgcggagaacagtaggcctcgtgcacaatag
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| Protein seq | MSKARVYTDVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKAQQETLVKAIDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRPRAQ |
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| Function | Casein kinase II subunit alpha-2 [UniProtKB/Swiss-Prot:B6F107] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000980 | OsLima_07g0000980.02 | Chr07 | 812511 | 818005 | - | NAM | ||
| CDS seq | atgtccaaggccagggtctacaccgacgtcaacgtgctgcgccccaaggagtactgggactacgaggccctcaccgtccaatggggtgagcaggatgattatgaagttgtcaggaaagttgggagaggaaaatacagcgaggtctttgagggtattaatgtcaacaacaacgaaaaatgcattatcaaaattctcaagcctgtgaagaaaaagaagatcaaaagagagataaaaatacttcagaatctttgtggaggtccaaatatcgtgaaactgcttgatattgttagagatcagcactcaaaaacaccaagcttgatatttgaatatgtcaacaacacagatttcaaagtgctatacccaaccctgacagattatgacatccgttattatatctacgagctactgaaggctttagattactgccattcacaaggcatcatgcaccgcgatgtgaagcctcacaatgttatgatagatcacgagcttcgaaaactccgattaatagactggggccttgctgaattctaccaccctggcaaggaatataatgtccgtgttgcttcaaggtacttcaagggacctgagcttcttgttgacttgcaagattatgactactctttggacatgtggagtcttggttgcatgtttgctggaatggcacagcaggaaaccttggtcaaagccatcgatttccttgacaagcttcttcgctatgatcaccaggatagacttactgcacgtgaagctatggcacacccatactttctccaagtgagggctgcggagaacagtaggcctcgtgcacaatag
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| Protein seq | MSKARVYTDVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMAQQETLVKAIDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRPRAQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000980 | OsLima_07g0000980.01 | Chr07 | 812511 | 818005 | - | NAM | ||
| CDS seq | atgtccaaggccagggtctacaccgacgtcaacgtgctgcgccccaaggagtactgggactacgaggccctcaccgtccaatggggtgagcaggatgattatgaagttgtcaggaaagttgggagaggaaaatacagcgaggtctttgagggtattaatgtcaacaacaacgaaaaatgcattatcaaaattctcaagcctgtgaagaaaaagaagatcaaaagagagataaaaatacttcagaatctttgtggaggtccaaatatcgtgaaactgcttgatattgttagagatcagcactcaaaaacaccaagcttgatatttgaatatgtcaacaacacagatttcaaagtgctatacccaaccctgacagattatgacatccgttattatatctacgagctactgaaggctttagattactgccattcacaaggcatcatgcaccgcgatgtgaagcctcacaatgttatgatagatcacgagcttcgaaaactccgattaatagactggggccttgctgaattctaccaccctggcaaggaatataatgtccgtgttgcttcaaggtacttcaagggacctgagcttcttgttgacttgcaagattatgactactctttggacatgtggagtcttggttgcatgtttgctggaatgatcttccgcaaggagccatttttctatggtcatgacaaccatgatcaacttgttaagattgcaaaggcacagcaggaaaccttggtcaaagccatcgatttccttgacaagcttcttcgctatgatcaccaggatagacttactgcacgtgaagctatggcacacccatactttctccaagtgagggctgcggagaacagtaggcctcgtgcacaatag
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| Protein seq | MSKARVYTDVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKAQQETLVKAIDFLDKLLRYDHQDRLTAREAMAHPYFLQVRAAENSRPRAQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000980 | OsLima_07g0000980.03 | Chr07 | 812511 | 818081 | - | IsoSeq | ||
| CDS seq | aaaaagaaagaaaaaggaaaaaagattcatctcttcctcctcgtcttgtccccttccctcgtcgaaaccctagctaggctcgccgccggcgacgcccgcctcgccgatgcgctcccccacctgaccgctccgcctcgctctcccgggtcgtcgttgcctcaccgctgtgcccgcccacccccacctgggcagcgggcgggatccagtcccagatcggcgccatgtccaaggccagggtctacaccgacgtcaacgtgctgcgccccaaggagtactgggactacgaggccctcaccgtccaatggggtgagcaggatgattatgaagttgtcaggaaagttgggagaggaaaatacagcgaggtctttgagggtattaatgtcaacaacaacgaaaaatgcattatcaaaattctcaagc
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| Protein seq | KKKEKGKKIHLFLLVLSPSLVETLARLAAGDARLADALPHLTAPPRSPGSSLPHRCARPPPPGQRAGSSPRSAPCPRPGSTPTSTCCAPRSTGTTRPSPSNGVSRMIMKLSGKLGEENTARSLRVLMSTTTKNALSKFSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr07 | 813247 | 814045 | - | OsLima_07g0000980.01 | OsLima_07g0000980.02,OsLima_07g0000980.01 | All |
| SE | Chr07 | 813247 | 813859 | - | OsLima_07g0000980.03 | OsLima_07g0000980.03,OsLima_07g0000980.01 | All |
| A5 | Chr07 | 813088 | 813224 | - | OsLima_07g0000980.03 | OsLima_07g0000980.02,OsLima_07g0000980.03,OsLima_07g0000980.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.959614 | 0.408768 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0114400 | RBH | 7.105729 | 7.831886 | 14.585298 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02350 | RBH | 4.440914 | 4.826646 | 3.528938 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0114400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000940 | RBH | 1.892729 | 58.387367 | 13.700301 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000970 | RBH | 1.431513 | 14.067100 | 8.405732 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000900 | RBH | 4.055372 | 32.652615 | 26.114759 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000920 | RBH | 0.603623 | 1.620329 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000920 | RBH | 15.827249 | 52.512398 | 36.749062 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0013500 | RBH | 18.882561 | 31.3625805 | 23.2917005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000920 | RBH | 0.948193 | 4.331468 | 3.296290 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0011400 | RBH | 28.9016665 | 38.647892 | 54.658575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035510 | RBH | 0.683362 | 0.465095 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0001020 | RBH | 1.910514 | 35.670639 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0001010 | RBH | 6.838718 | 47.551678 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0001090 | RBH | 1.981419 | 2.516135 | 1.834425 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000950 | RBH | 0.934278 | 22.591944 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000980 | RBH | 2.013873 | 18.951296 | 12.317120 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000990 | RBH | 6.238750 | 27.507566 | 19.705563 |
