Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0023210 | OGI:07045580 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:22118859-22125038 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tagcacaaactgtatgtgtcaacattttgtttgattgatacaagcacattagagctaggggcgcgccgttggcgcgccgcctggacgcaagcaggggcagaaagtatgaggaagtgtccatagtacaaattacacacaggcatcttgatatttagaggtctctaatagcagtaagtacatatatagatgtttcttcatattaggaggttccatgattaccatgtaaggcctagaactaatacaggttatcttgacagtgatcaacctggttggtggcagcaaaagaatggctgcaacatagccatgagtattgctatgttctttatagaacatcgaaggtggcgtccaggcgagttgttttgttgaaatggaaggtgcatagtgattgtaggtatatgtgattgcgggttgcaaattttgctcatactttcttcaggttgcatcgatcatccgttgacatctggagcatcatattctttgaaacaccacctgccatttgaactccaatgctgatggtttccttgccgtccatcaatggctttaagtagtctttagaaaattctttcgtaaagtactgtaattggcattgtatatcagccttgacttataattggtaagatagatagccatgtatggtgtatataaataaatgagcagcaggtgtaggaacttacaactctatcctgcttcatgaatgtgttattcacagcaacagcatagaatttgcttgaacggtctaggcactcctcaagatcttcgatatactttttcaagtcagctgttggatcaacattctttgcacagaaacacagctcaagcgtacgcttagtgttgcctgtatgaaaatacttctattagtatttgcattgtttgtgaaagaactgaatgagcattaaaaagttgctgatggagagagtttttgcaggctgcagctggtacattaacatctactagtaatatgcccgtgctaaatgctacggtgtaattctatttgtctttaataatttttaaaattttcatgttagcaaaaaatattactatatgaacggtacatttgagctttaattcaatttatgtcatgcacaaatatatttaacataaagtataataatatgatatgccaattcatgcacatatataatgcATatatatgtgcccccgtgtcatgatgcataatatgatattaataagcatctccttcttacgttgaagcttagtagaagttgtacttccagctcttgcatctatgcttatcgaaaaatcagcagacaaggtatatgaatatatgcgatgggagtatgtagagatcacaaagaaagtccaaaatatatacatgtcacaatacctgaagaaatattagttatgtctcgaaatggggcgcgttcttcaaacgccgatccatttggatccattcctatccgataaaacatcaatctaccttagtccacaacaaacatataatgtgatttacaaacaaatcacataacatttcatctaatcgaaaattgctagttggatatcatgtcacatttatttcatttaggtactttagcaatattgtattacctaaaaataaaaatcatttgtataaaacaaatttaagagtacaatatatctacataaaaaataaattgtgcattacactgatttcgtgtaggtagtaatataaattttagggccccgcaatgttatatggttgggagtcaatgcaaagagcatatgcaagggagaaatatctataaatggatcagcactagagtttgaatggatcgaagaacccacgtcatgtatgtactgcctaaatgagctatctcatctatcgaaatacagagttcattaaggcatttcacatggctgactatttagccagactctcatctctgtcaattctcagagtacccgctatcttcacaattggtttgattccttatgagtaagcttcatgttcactgaaagtacctgagctgtaaatagcaaatgtgaaaacatgtagatatcaatgcaccagcgatttattatgagccatgaagcgtaacaacagtgattttgatatatcagtacagtttattaaaaacatcagttaatttgatatgccagtacaaattattaaaaacagtaatttgatatgccagtacaaattattaaaaacagtaaattataatttgagaagacgacatcgatttatataaatatcctccaggagcatcacatatgagcgcatcaggttaagagtaaataatctcaagctgtacattaggctccctcagaagcatcacatatgacatctggcaaaactaaaagtatataattagcaatcaagcatagtttcaacacattaacttaagtatcggagagttcaattaaaaaacctgattcagtgagctgagtacagaagccatctttcataaaataagatccgtagtttaatttcaattttcttgggtctaaaacatgcaattaattgaccattctaaagcatacaattttattaggcctgaaatcatacaattatctttatcaacctcgtccaattcatggcaaaatttggatcagtgatgaatcttgatcaatctagtctaaaactgggatgagcaatgaataatggtttgatcatacaaaaatcagttccactcaacctttgcaaatttttagacatcacatacaaaatcagggttgatcatcttgcgtcaaagaataatgggatgagagcacagaatcagcatgtatggatgcaccttagcatagcatagtgaatcagtacaggttgtgcttaggtatttactgaaaatacttaatattatcaacaatatacatgttgttacaagcatttctcttagcaattcagtgtaccaactgtagttcacatccttattcatttcgttatatcaaacaaattaagtaggtgcgacaaagatgctggtaacaagtagaagatttattgatgcaaccaaaatttaacattgatacagtacatgggtaatgtcagtaaaattcaaatggggaagcaatctacaggaattcccaatgattcagtatacttaataaatgtttgaacttaaactgtcttatcagcagttcagtgtacgcatgtttttctagctgttcagtctaaagggataccagcagttcagcataagcatgttttatttccaaatgattcaactaaatattgtgcctatttacattctgaactttaaactgagttatatacaaaatctgaaatataaatcatgtgctgaatctgaaataagtaacaccatcttatttttagtaaatatctccattatattttagtaaataTCtcTCCATTATTAGAAGATTTAATTAGTTGCTATAGGATATGTAGTGGTCATTGATATATTAACAGCTTGAAAATTTGTCTGAATTTATATTGATTGCAAAGCAAGAAATTTGTGAACGAAAAAGGAAGTTAATGCTATTTTATAAATTCAGATAAATGACCGATTTGACATGTTCAGAGTAACAGTTTGCTCTAGTTCAATACACTTCATTGGAAaaaaaaagagccaatgatcatgaagacaataaccaatttaaaatcttactgcttgcacataattttacaaggaaaataagagcaattctatattatcaggaaatggattgaataccaatggcattaatatgacacataaactgttgcaagcttcagttatgatgtcagtaatagaaggaatgaaccttcaggatcagggctttcaggatgagcgaggaaaaacaccgtctaggcaaccttgttcaagcactccttaatctgcatgatcaacaagttgtatttttttctaagactttagtccaattgaggatagatcaagaagaggaaggagctcgcattgtaccagggcagagaggactgccgacgctgatcttgtaggactgactgtggcgctcggaatcatttgtaatcctaagcaaattaataagctacgtggatgtggttcttgtaatttatttggagtaatcagtttaatttaatcacagacacattgtgaaattacacgttttttggatgccctatagcaaattttgctatctagaatagaaactgaatgactgagacgtgaatcctaacagcccacacaactcccttgttacgaagtattcggcacatgacatcagcacaaagagaaatctgcttgtatgtccaaggtactgtaggttcaaagaaagaaattcttgactggatggctacaatttaacccttagcatggtgcagtagaaatgtttatagaccatttagcgaagattgatccatgcaggagacatttgcactatttgtaaggggtaatcatgatggaaggaaattacctttaccaaacagaaatttagtagaatcagccaaaaatctccttgattgtgcagtaaacaatagcaattggcatggtgtccagtcagctttgcTtcgacaatctgaactttttttttcctacatattaaataatttgatatcaaaggttaagtcagtttgcgagatataagtttttttttaaaaaaaaagaagtgtatcatcacttcagagacaactgtgatagttaatctacatacaaaattaagtttcagggacacagaactgagtatgaatgcttagcacttcgatcagactccacaacacactatacacacttatgttgacagaattgcatctcctataggatttccagaaaaaacagagaaatgaatgtataccgcctgcagattggtgtattctcacatgatcctacaggtaaatcacaggaggcctctcatctgcatgacagaagagatagattgcttttagtaagtaaactgaataatatttttcatggtttagctgtaaggagcaacttgtctgcTTtttttcatggTttttatagctttgggcagtgcaggacaaaagaaccttggaaccaaagtaccaaactttcattagttaatataagcagttgattgagttcaacactctgaacagcaaatatttgacagggagattaaggaagagggataatcaccatctttaacagtaagtaaatccagcctcctcggactttgacacaacggtgccatcctcaaacatggacaagttctgtgcttccccaaatctgaaacggagctccctataccattgatgaaatgcggttttgatttagtgcaactccaaacctgtacatgaaaacagtcacaaaggggaaacatcaagctgcaaagaccaaacttcttttcaaccatcataagcagaaacaaaatcaagcaaaaatggaccaacgagttgcctagattaagaaagaaagtaCCccaccgtcctcttcccacccgatgccgacctcatccggacatcacctcgcgcccgcctctcgagcaccgcaccgtcttgcatcctccaccatgcttcaccactccctgtaccagcatcctccatgagaagccacccggtggaaccctgtataacactgcctCTAtcttcttctaacctcctcccatccaatgggcgacgcagaaaaaattggaagggctattctttctagtacaaaccgcaaaaaacttatctcagaaattggcgcgccgtcaccgtgctcctcactgccactgccagttccatgcgcgcggtcattggtgccggagacccaggatgcgctcgacggccttggatCtcctcaccaccgagctggaccccgccgagccagaggccggatccagacgtcggcggtcggcagcgacggcggcagtggcggcgtgagatggaggcggatgcagaggtggcgcacccggcgacggcgacggcgtgccgcgaGggaaagacgctcggcaacggcgcaggcggagcggagacggagacggagacggagacagtggcggcggatgggacAGaggcggcagagggcggaggagggctaagggcggctgctggggtcgagggagactgggacctgtggcgtggtcgtcggtgctccgacctcgtcgccgatggagatagcacccgccttcaccgccgctccgcgacggcgacgatgtgagggggacgcggaggagctcggagatggcggcgcgacggcggcggcggaggcggaggtggagacggaggcggaggcggaggcggaggtggcggcgcgagggggaggcggtggcgacggcggtggagaaagcggcggcagtggcgacgcgagccgaaggagacgacgatgg
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| CDS seq | atggatccaaatggatcggcgtttgaagaacgcgccccatttcgagacataactaatatttcttcaggcaacactaagcgtacgcttgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgaggagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactttacgaaagaattttctaaagactacttaaagccattgatggacggcaaggaaaccatcagcattggagttcaaatggcaggtggtgtttcaaagaatatgatgctccagatgtcaacggatgatcgatgcaacctgaagaaagtatga |
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| Protein seq | MDPNGSAFEERAPFRDITNISSGNTKRTLELCFCAKNVDPTADLKKYIEDLEECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKV |
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| Function | Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0023210 | OsLima_03g0023210.02 | Chr03 | 22118859 | 22125038 | - | NAM | ||
| CDS seq | atggatccaaatggatcggcgtttgaagaacgcgccccatttcgagacataactaatatttcttcaggcaacactaagcgtacgcttgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgaggagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactttacgaaagaattttctaaagactacttaaagccattgatggacggcaaggaaaccatcagcattggagttcaaatggcaggtggtgtttcaaagaatatgatgctccagatgtcaacggatgatcgatgcaacctgaagaaagtatga
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| Protein seq | MDPNGSAFEERAPFRDITNISSGNTKRTLELCFCAKNVDPTADLKKYIEDLEECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0023210 | OsLima_03g0023210.01 | Chr03 | 22118859 | 22125038 | - | NAM | ||
| CDS seq | atggaggatgctggtacagggagtggtgaagcatggtggaggatgcaagacggtgcggtgctcgagaggcgggcgcgaggtgatgtccggatgaggtcggcatcgggtgggaagaggacggtttggagttgcactaaatcaaaaccgcatttcatcaatggtatagggagctccgtttcagatttggggaagcacagaacttgtccatgtttgaggatggcaccgttgtgtcaaagtccgaggaggctggatttacttactgttaaagatgatgagaggcctcctgtgatttacctgtag
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| Protein seq | MEDAGTGSGEAWWRMQDGAVLERRARGDVRMRSASGGKRTVWSCTKSKPHFINGIGSSVSDLGKHRTCPCLRMAPLCQSPRRLDLLTVKDDERPPVIYL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr03 | 22119693 | 22120204 | - | OsLima_03g0023210.01 | OsLima_03g0023210.02,OsLima_03g0023210.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.248534 | 0.272078 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0562000 | RBH | 2.892160 | 2.255277 | 2.696196 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0562000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0023460 | RBH | 0.949648 | 4.578158 | 12.714923 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0023310 | RBH | 0.672308 | 4.131742 | 7.031319 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0023340 | RBH | 2.311965 | 1.499527 | 16.450228 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0023380 | RBH | 0.678877 | 0.123736 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0023170 | RBH | 12.196071 | 10.702356 | 25.460316 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0343800 | RBH | 2.9201755 | 12.5689125 | 9.893421 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0022940 | RBH | 0.239247 | 0.459218 | 1.952846 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0345000 | RBH | 3.9925955 | 15.2179035 | 13.5500385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0023260 | RBH | 0.960227 | 5.425174 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0023310 | RBH | 4.358679 | 32.877029 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0023010 | RBH | 0.769832 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G023030 | RBH | 1.270754 | 2.698550 | 3.371190 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022990 | RBH | 1.870727 | 22.770267 | 9.731681 |
