Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsARC_03g0023380 OGI:07045580 | 13/16 ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) Chr03:21456779-21462970
Gene Symbol -
DNA seq

GAAGAAAAATATGTTCAGATTTAGCACAAACTGTATGTGTCAACATTTTGTTTGATTGATACAAGCACACTAGAGCTAGGGGCGCGCCGTTGGCGCGCCGCCTGGACGCAAGCAGGGGCAGAAAGTATGAGGAAGTGTCCATAGTACAAATTACACACAGGCATCTTGATATTTAGAGGTCTCTAATAGCAGTAAGTACATATATAGATGTTTCTTCATATTAGGAGGTTCCATGATTACCATGTAAGGCCTAGAACTAATACAGGTTATCTTGACAGTGATCAACCTGGTTGGTGGCAGCAAAAGAATGGCTGCAACATAGCCATGAGTATTGCTATGTTCTTTATAGAACATCGAAGGTGGCTTCCAGGCGAGTTGTTTTGTTGAAATGGAAGGTGCATAGTGATTGTAGGTATATGTGATTGCGGGTTGCAAATTTTGCCCATACTTTCTTCAGGTTGCATCGATCATCCGTTGACATCTGGAGCATCATATTCTTTGAAACACCACCTGCCATTTGAACTCCAATGCTGATGGTTTCCTTGCCGTCCATCAATGGCTTTAAGTAGTCTTTAGAAAATTCTTTCGTAAAGTACTGTAATTGGCATTGTATATCAGCCTTGACTTATAATTGGTAAGATAGATAGCCATGTATGGTGTATATAAATAAATGAGCAGCAGGTGTAGGAACTTACAACTCTATCCTGCTTCATGAATGTGTTATTCACAGCAACAGCATAGAATTTGCTTGAACGGTCTAGGCACTCAAGATCTTCGATATACTTTTTCAAGTCAGCTGTTGGATCAACATTCTTTGCACAGAAACACAGCTCAAGCGTACGCTTAGTGTTGCCTGTATGAAAATACTTCTATTAGTATTTGCATTGTTTGTGAAAGAACTGAATGAGCATTAAAAAGTTGCTGATGGAGAGAGTTTTTGCAGGCTGCAGCTGGTACATTAACATCTACTAGTAATATGCCCGTGCTAAATGCTACGGTGTAATTCTATTTGTCTTTAATAATTTTTAAAATTTTCATGTTAGCAAAAAATATTACTATATGAACGGTACATTTGAGCTTTAATTCAATTTATGTCATGCACAAATATATTTAACATAAAGTATAATAATATGATATGCCAATTCATGCACATATATAATGCATATATATGTGCCCCCGTGTCATAATGCATAATAATATGATATTAATAAGCATCTCCTTACGTTGAAGCTTAGTAGAAGTTGTACTTCCAGCTCTTGCATCTATGCTTATCGAAAAATCAGCAGACAAGGTATATGAATATATGCGATGGGAGTATGTAGAGATCACAAAGAAAGTCCAAAATATATACATGTCACAATACCTGAAGAAATATTAGTTATGTCTCGAAATGGGGCGCGTTCTTCAAACGCCGATCCATTTGGATCCATTCCTATCCGATAAAACATCAATCTACCTTAGTCCACAACAAACATATAATGTGATTTACAAACAAATCACATAACATTTCATCTAATCGAAAATTGCTAGTTGGATATCATGTCACATTTATTTCATTTAGGTACTTTAGCAATATTGTATTACCTAAAAATAAAAATCATTTGTATAAACAAATTTAAGAGTACAATATATCTACATAAAAAATAAATTGTGCATTACACTGATTTCGTGTAGGTAGTAATATAAATTTTAGGGCCCCGCAATGTTATATGGTTGGGAGTCAATGCAAAGAGCATATGCAAGGGAGAAATATCTATAAATGGATCAGCACTAGAGTTTGAATGGATCGAAGAACCCACGTCATGTATGTACTGCCTAAATGAGCTATCTCATCTATCGAAATACAGAGTTCATTAAGGCATTTCACATGGCTGACTATTTAGCCAGACTCTCATCTCTGTCAATTCTCAGAGTACCTGCTATCTTCACAATTGGTTTGATTCCTTATGAGTAAGCTTCATGTTCACTGAAAGTACCTGAGCTGTAAATAGCAAATGTGAAAACATGTAGATATCAATGCACCAGCGATTTATTATGAGCCATGAAGCGTAACAACAGTGATTTTGATATATCAGTACAAATTATTAAAAACATCAGTTAATTTGATATGCCAGTACAAATTATTAAAAACAGTAATTTGATATGCCAGTACAAATTATTAAAAACAGTAAATTATAATTTGAGAAGACGACATCGATTTATATAAATATCCTCCAGGAGCATCACATATGAGCGCATCAGGTTAAGAGTAAATAATCTCAAGCTGTACATTAGGCTCCCTCAGAAGCATCACATATGACATCCGGCAAAACTAAAAGTATATAATTAGCAATCAAGCATAGTTTCAACACATTAACTTAAGTATCGGAGAGTTCAATTAAAAAACCTGATTCAGTGAGCTGAGTACAGAAGCCATCTTTCATAAAATAAGATCCGTAGTTTAATTTCAATTTTCTTGGGTCTAAAACATGCAATTAATTGACCATTCTAAAGCATACAACTTTATTAGGCCTGAAATCATACAATTATCTTTATCAACCTCGTCCAATTCATGGCAAAATTTGGATCAGTGATGAATCTTGATCAATCTAGTCTAAAACTGGGATGAGCAATGAATAATGGTTTGATCATACAAAAATCAGTTCCACTCAACCTTTGCAAATTTTTAGACATCACATACAAAATCAGGGTTGATCATCTTGCGTCAAAGAATAATGGGATGAGAGCACAGAATCAGCATGTATGGATGCACCTTAGCATAGCATAGTGAATCAGTACAGGTTGTGCTTAGGTATTTACTGAAAATACTTAATATTATCAACAATATACATGTTGTTACAAGCATTTCTCTTAGCAATTCAGTGTACCAACTGTAGTTCACATCCTTGTTCATTTCGTTATATCAAACAAATTAAGTAGGTGCGACAAAGATGCTGGTAACAAGTAGAAGATTTATTGATGCAACCAAAATTTAACATTGATACAGTACATGGGTAATGTCAGTAAAATTCAAATGGGGAAGCAATCTACAGGAATTCCCAATGATTCAGTATACTTAATAAATGTTTGAACTTAAACTGTCTTATCAGCAGTTCAGTGTACGCATGTTTTTCTAGCTGTTCAGTCTATAGGGATACCAGCAGTTCAGCATAAGCATGTTTTATTTCCAAATGATTCAACTAAATATTGTGCCTATTTACATTCTGAACTTTAAACTGAGTTATATACAAAATCTGAAATATAAATCATGTGCTGAATCTGAAATAAGTAACACCATCTTATTTTTAGTAAATATCTCCATTATATTTTAGTAAATATCTCCATTATTAGAAGATTTAATTAGTTGCTATAGGATATGTAGTGGTCATTGATATATTAACAGCTTGAAAATTTGTCTGAATTTATATTGATTGCAAAGCAAGAAATTTGTGAACGAAAAAGGAAGTTAACGCTATTTTATAAATTCAGATAAATGACCGATTTGACATGTTCAGAGTAACAGTTTGCTCTAGTTCAATACACTTCATTGGAAAAAAAAGAGCCAATGATCATGAAGACAATAACCAATTTAAAATCTTACTGCTTGCACATAATTTTACAAGGAAAATAAGAGCAATTCTATATTATCAGGAAATGGATTGAATACCAATGGCATTAATATGACACATAAACTGTTGCAAGCTTCAGTTATGATGTCAGTAATAGAAGGAATGAACCTTCAGGATCAGGGCTTTCAGGATGAGCGAGGAAAAACACCGTCTAGGCAACCTTGTTCAAGCACTCCTTAATCTGCATGATCAACAAGTTGTATTTTTTTCTAAGACTTTAGTCCAATTGAGGATAGATCAAGAAGAGGAAGGAGCTCGCATTGTACCAGGGCAGAGAGGACTGCCGACGCTGATCTTGTAGGACTGACTGTGGCGCTCGGAATCATTTGTAATCCTAAGCAAATTAATAAGCTACGTGGATGTGGTTCTTGTAATTTATTTGGAGTAATCAGTTTAATTTAATCACAGACACATTGTGAAATTACACGTTTTTTGGATGCCCTATAGCAAATTTTGCTATCTAGAATAGAAACTGAATGACTGAGACGTGAATCCTAACAGCCCACACAACTCCCTTGTTACGAAGTATTCGGCACATGACATCAGCACAAAGAGAAATCTGCTTGTATGTCCAAGGTACTGTAGGTTCAAAGAAAGAAATTCTTGACTGGATGGCTACAATTTAACCCTTAGCATGGTGCAGTAGAAATGTTTACAGACCATTTAGCGAAGATTGATCCATGCAGGAGACATTTGCACTATTTGTAAGGGGTAATCATGATGGAAGGAAATTACCTTTACCAAACAGAAATTTAGTAGAATCAGCCAAAAATCTCCTTGATTGTGCAGTAAACAATAGCAATTGGCATGGTGTCCAGTCAGCTTTGCTTCGACAATCTGAACTTTTTTTTTCCTACATATTAAATAATTTGATATCAAAGGTTAAGTCAGTTTGCGAGATATAAGTTTTTTTTTAAAAAAAAAAGAAGTGTATCATCACTTCAGAGACAACTGTGATAGTTAATCTACATACAAAATTAAGTTTCAGGGACACAGAACTGAGTATGAATGCTTAGCACTTCGATCAGACTCCACAACACACTATACACACTTATGTTGACAGAATTGCATCTCCTATAGGATTTCCAGAAAAAACAGATAAATGAATGTATACCGCCTGCAGATTGGTGTATTCTCACATGATCCTACAGGTAAATCACAGGAGGCCTCTCATCTGCATGACAGAAGAGATAGATTGCTTTTAGTAAGTAAACTGAATAATATTTTTCATGGTTTAGCTGTAAGGAGCAACTTGTCTGCTTTTTTTCATGGTTTTTATAGCTTTGGGCAGTGCAGGACAAAAGAACCTTGGAACCAAAGTACCAAACTTTCATTAGTTAATATAAGCAGTTGATTGAGTTCAACACTCTGAACAGCAAATATTTGACAGGGAGATTAAGGAAGAGGGATAATCACCATCTTTAACAGTAAGTAAATCCAGCCTCCTCGGACTTTGACACAACGGTGCCATCCTCAAACATGGACAAGTTCTGTGCTTCCCCAAATCTGAAACGGAGCTCCCTATACCATTGATGAAATGCGGTTTTGATTTAGTGCAACTCCAAACCTGTACATGAAAACAGTCACAAAGGGGAAACATCAAGCTGCAAAGACCAAACTTCTTTTCAACCATCATAAGCAGAAACAAAATCAAGCAAAAATGGACCAACGAGTTGCCTAGATTAAGAAAGAAAGTACCCCACCGTCCTCTTCCCACCCGATGCCGACCTCATCCGGACATCACCTCGCGCCCGCCTCTCGAGCACCGCACCGTCTTGCATCCTCCACCATGCTTCACCACTCCCTGTACCAGCATCCTCCATGAGAAGCCACCCGGTGGAACCCTGTATAACACTGCCTCTATCTTCTTCTAACCTCCTCCCATCCAATGGGCGACGCAGAAAAAATTGGAAGGGCTATTCTTTCTAGTACAAACCGCAAAAAACTTATCTCAGAAATTGGCGCGCCGTCACCGTGCTCCTCACTGCCACTGCCAGTTCCATGCGCGCGGTCATTGGTGCCGGAGATCCAGGATGCGCTCGACGGCCTTGGATCTCCTCACCACCGAGCTGGACCCCGCCGAGCCAGAGGCCGGATCCAGACGTCGGCGGTCGGCAGCGACGGCGGCAGTGGCGGCGTGAGATGGAGGCGGATGCAGAGGTGGCGCACCCAGCGACGGCGACGGCGTGCCGCGAGGGAAAGACGCTCGGCAACGGCGCAGGCGGAGCGGAGACGGAAACGGAGACGGAGACGGTGGCGGCGGATGGGACAGAGGCGGCAGAGGGCGGAGGGCTAAGGGCGGCTGCTAGGGTCGAGGGAGACTGGGACCTGTGGCGTGGTCGTCGGTGCTCCGACCTCGTCGCCGATGGAGATAGCACCCGCCTTCACCGCCGCTCCGCGACGGCGACGATGTGAGGGGGAGGCGGAGGAGCTCGGAGATGGCGGCGCGACGGCGGCGGCGGAGGCGGAGGTGGAGACGGAGGCGGAGGCGGAGGCGGAGGTGGCGGCGCGAGGGGGAGGCGGTGGCGACGGCGGTGGAGAAAGCGGCGGCAGTGGCGACGCGAGCCGAAGGAGACGACGATGG

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CDS seq

ATGGATCCAAATGGATCGGCGTTTGAAGAACGCGCCCCATTTCGAGACATAACTAATATTTCTTCAGATGCAAGAGCTGGAAGTACAACTTCTACTAAGCTTCAACGCAACACTAAGCGTACGCTTGAGCTGTGTTTCTGTGCAAAGAATGTTGATCCAACAGCTGACTTGAAAAAGTATATCGAAGATCTTGAGTGCCTAGACCGTTCAAGCAAATTCTATGCTGTTGCTGTGAATAACACATTCATGAAGCAGGATAGAGTTTACTTTACGAAAGAATTTTCTAAAGACTACTTAAAGCCATTGATGGACGGCAAGGAAACCATCAGCATTGGAGTTCAAATGGCAGGTGGTGTTTCAAAGAATATGATGCTCCAGATGTCAACGGATGATCGATGCAACCTGAAGAAAGTATGGGCAAAATTTGCAACCCGCAATCACATATACCTACAATCACTATGCACCTTCCATTTCAACAAAACAACTCGCCTGGAAGCCACCTTCGATGTTCTATAA

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Protein seq

MDPNGSAFEERAPFRDITNISSDARAGSTTSTKLQRNTKRTLELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL

Function Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsARC_03g0023380 OsARC_03g0023380.02 Chr03 21456779 21462970 - NAM
CDS seq

ATGGATCCAAATGGATCGGCGTTTGAAGAACGCGCCCCATTTCGAGACATAACTAATATTTCTTCAGATGCAAGAGCTGGAAGTACAACTTCTACTAAGCTTCAACGCAACACTAAGCGTACGCTTGAGCTGTGTTTCTGTGCAAAGAATGTTGATCCAACAGCTGACTTGAAAAAGTATATCGAAGATCTTGAGTGCCTAGACCGTTCAAGCAAATTCTATGCTGTTGCTGTGAATAACACATTCATGAAGCAGGATAGAGTTTACTTTACGAAAGAATTTTCTAAAGACTACTTAAAGCCATTGATGGACGGCAAGGAAACCATCAGCATTGGAGTTCAAATGGCAGGTGGTGTTTCAAAGAATATGATGCTCCAGATGTCAACGGATGATCGATGCAACCTGAAGAAAGTATGGGCAAAATTTGCAACCCGCAATCACATATACCTACAATCACTATGCACCTTCCATTTCAACAAAACAACTCGCCTGGAAGCCACCTTCGATGTTCTATAA

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Protein seq

MDPNGSAFEERAPFRDITNISSDARAGSTTSTKLQRNTKRTLELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL

Gene Transcript Chromosome Start End Strand Source
OsARC_03g0023380 OsARC_03g0023380.01 Chr03 21456779 21462970 - NAM
CDS seq

ATGGATCCAAATGGATCGGCGTTTGAAGAACGCGCCCCATTTCGAGACATAACTAATATTTCTTCAGGCAACACTAAGCGTACGCTTGAGCTGTGTTTCTGTGCAAAGAATGTTGATCCAACAGCTGACTTGAAAAAGTATATCGAAGATCTTGAGTGCCTAGACCGTTCAAGCAAATTCTATGCTGTTGCTGTGAATAACACATTCATGAAGCAGGATAGAGTTTACTTTACGAAAGAATTTTCTAAAGACTACTTAAAGCCATTGATGGACGGCAAGGAAACCATCAGCATTGGAGTTCAAATGGCAGGTGGTGTTTCAAAGAATATGATGCTCCAGATGTCAACGGATGATCGATGCAACCTGAAGAAAGTATGGGCAAAATTTGCAACCCGCAATCACATATACCTACAATCACTATGCACCTTCCATTTCAACAAAACAACTCGCCTGGAAGCCACCTTCGATGTTCTATAA

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Protein seq

MDPNGSAFEERAPFRDITNISSGNTKRTLELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL

Gene Transcript Chromosome Start End Strand Source
OsARC_03g0023380 OsARC_03g0023380.04 Chr03 21460289 21462970 - NAM
CDS seq

ATGGAGGATGCTGGTACAGGGAGTGGTGAAGCATGGTGGAGGATGCAAGACGGTGCGGTGCTCGAGAGGCGGGCGCGAGGTGATGTCCGGATGAGGTCGGCATCGGGTGGGAAGAGGACGGTTTGGAGTTGCACTAAATCAAAACCGCATTTCATCAATGGTATAGGGAGCTCCGTTTCAGATTTGGGGAAGCACAGAACTTGTCCATGTTTGAGGATGGCACCGTTGTGTCAAAGTCCGAGGAGGCTGGATTTACTTACTGTTAAAGATGATGAGAGGCCTCCTGTGATTTACCTGTAG

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Protein seq

MEDAGTGSGEAWWRMQDGAVLERRARGDVRMRSASGGKRTVWSCTKSKPHFINGIGSSVSDLGKHRTCPCLRMAPLCQSPRRLDLLTVKDDERPPVIYL

Gene Transcript Chromosome Start End Strand Source
OsARC_03g0023380 OsARC_03g0023380.03 Chr03 21456779 21462970 - NAM
CDS seq

ATGGAGGATGCTGGTACAGGGAGTGGTGAAGCATGGTGGAGGATGCAAGACGGTGCGGTGCTCGAGAGGCGGGCGCGAGGTGATGTCCGGATGAGGTCGGCATCGGGTGGGAAGAGGACGGTTTGGAGTTGCACTAAATCAAAACCGCATTTCATCAATGGTATAGGGAGCTCCGTTTCAGATTTGGGGAAGCACAGAACTTGTCCATGTTTGAGGATGGCACCGTTGTGTCAAAGTCCGAGGAGGCTGGATTTACTTACTGTTAAAGATGATGAGAGGCCTCCTGTGATTTACCTGTAG

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Protein seq

MEDAGTGSGEAWWRMQDGAVLERRARGDVRMRSASGGKRTVWSCTKSKPHFINGIGSSVSDLGKHRTCPCLRMAPLCQSPRRLDLLTVKDDERPPVIYL

OsARC_03g0023380.04OsARC_03g0023380.03OsARC_03g0023380.02OsARC_03g0023380.01AS21457000 bp21458000 bp21459000 bp21460000 bp21461000 bp21462000 bp21463000 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr03 21457631 21458002 - OsARC_03g0023380.03 OsARC_03g0023380.03,OsARC_03g0023380.02 All
SE Chr03 21457631 21458142 - OsARC_03g0023380.02 OsARC_03g0023380.01,OsARC_03g0023380.02 All

Expression

Leaf Root Panicle
FPKM 0.678877 0.123736 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0562000 RBH 2.892160 2.255277 2.696196
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os03g0562000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0023460 RBH 0.949648 4.578158 12.714923
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_03g0023310 RBH 0.672308 4.131742 7.031319
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0023340 RBH 2.311965 1.499527 16.450228
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0023170 RBH 12.196071 10.702356 25.460316
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0343800 SBH 2.9201755 12.5689125 9.893421
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0022940 RBH 0.239247 0.459218 1.952846
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0345000 SBH 3.9925955 15.2179035 13.5500385
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0023210 RBH 0.248534 0.272078 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0023260 RBH 0.960227 5.425174 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0023310 RBH 4.358679 32.877029 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0023010 RBH 0.769832 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G023030 RBH 1.270754 2.698550 3.371190
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0022990 RBH 1.870727 22.770267 9.731681
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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