Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsKeNa_03g0023310 OGI:07045580 | 13/16 KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) Chr03:21199651-21205945
Gene Symbol -
DNA seq

gcaggtagcagcacctgaagaaaaatatgttcagatttagcacaaactgtatgtgtcaacattttgtttgattgatacaagcacactagagctaggggcgcgccgttggcgcgccgcctggacgcaagcaggggcagaaagtatgaggaagtgtccatagtacaaattacacacaggcatcttgatatttagaggtctctaatagcagtaagtacatatatagatgtttcttcatattaggaggttccatgattaccatgtaaggcctagaactaatacaggttatcttgacagtgatcaacctggttggtggcagcaaaagaatggctgcaacatagccatgagtattgctatgttctttatagaacatcgaaggtggcttccaggcgagttgttttgttgaaatggaaggtgcatagtgattgtaggtatatgtgattgcgggttgcaaattttgcccatactttcttcaggttgcatcgatcatccgttgacatctggagcatcatattctttgaaacaccacctgccatttgaactccaatgctgatggtttccttgccgtccatcaatggctttaagtagtctttagaaaattctttcgtaaagtactgtaattggcattgtatatcagccttgacttataattggtaagatagatagccatgtatggtgtatataaataaatgagcagcaggtgtaggaacttacaactctatcctgcttcatgaatgtgttattcacagcaacagcatagaatttgcttgaacggtctaggcactcaagatcttcgatatactttttcaagtcagctgttggatcaacattctttgcacagaaacacagctcaagcgtacgcttagtgttgcctgtatgaaaatacttctattagtatttgcattgtttgtgaaagaactgaatgagcattaaaaagttgctgatggagagagtttttgcaggctgcagctggtacattaacatctactagtaatatgcccgtgctaaatgctacggtgtaattctatttgtctttaataatttttaaaattttcatgttagcaaaaaatattactatatgaacggtacatttgagctttaattcaatttatgtcatgcacaaatatatttaacataaagtataataatatgatatgccaattcatgcacatatataatgcatatatatgtgcccccgtgtcataatgcataataatatgatattaataagcatctccttcttacgttgaagcttagtagaagttgtacttccagctcttgcatctatgcttatcgaaaaatcagcagacaaggtatatgaatatatgcgatgggagtatgtagagatcacaaagaaagtccaaaatatatacatgtcacaatacctgaagaaatattagttatgtctcgaaatggggcgcgttcttcaaacgccgatccatttggatccattcctatccgataaaacatcaatctaccttagtccacaacaaacatataatgtgatttacaaacaaatcacataacatttcatctaatcgaaaattgctagttggatatcatgtcacatttatttcatttaggtactttagcaatattgtattacctaaaaataaaaatcatttgtataaacaaatttaagagtacaatatatctacataaaaaataaattgtgcattacactgatttcgtgtaggtagtaatataaattttagggccccgcaatgttatatggttgggagtcaatgcaaagagcatatgcaagggagaaatatctataaatggatcagcactagagtttgaatggatcgaagaacccacgtcatgtatgtactgcctaaatgagctatctcatctatcgaaatacagagttcattaaggcatttcacatggctgactatttagccagactctcatctctgtcaattctcagagtacctgctatcttcacaattggtttgattccttatgagtaagcttcatgttcactgaaagtacctgagctgtaaatagcaaatgtgaaaacatgtagatatcaatgcaccagcgatttattatgagccatgaagcgtaacaacagtgattttgatatatcagtacaaattattaaaaacatcagttaatttgatatgccagtacaaattattaaaaacagtaatttgatatgccagtacaaattattaaaaacagtaaattataatttgagaagacgacatcgatttatataaatatcctccaggagcatcacatatgagcgcatcaggttaagagtaaataatctcaagctgtacattaggctccctcagaagcatcacatatgacatccggcaaaactaaaagtatataattagcaatcaagcatagtttcaacacattaacttaagtatcggagagttcaattaaaaaacctgattcagtgagctgagtacagaagccatctttcataaaataagatccgtagtttaatttcaattttcttgggtctaaaacatgcaattaattgaccattctaaagcatacaactttattaggcctgaaatcatacaattatctttatcaacctcgtccaattcatggcaaaatttggatcagtgatgaatcttgatcaatctagtctaaaactgggatgagcaatgaataatggtttgatcatacaaaaatcagttccactcaacctttgcaaatttttagacatcacatacaaaatcagggttgatcatcttgcgtcaaagaataatgggatgagagcacagaatcagcatgtatggatgcaccttagcatagcatagtgaatcagtacaggttgtgcttaggtatttactgaaaatacttaatattatcaacaatatacatgttgttacaagcatttctcttagcaattcagtgtaccaactgtagttcacatccttgttcatttcgttatatcaaacaaattaagtaggtgcgacaaagatgctggtaacaagtagaagatttattgatgcaaccaaaatttaacattgatacagtacatgggtaatgtcagtaaaattcaaatggggaagcaatctacaggaattcccaatgattcagtatacttaataaatgtttgaacttaaactgtcttatcagcagttcagtgtacgcatgtttttctagctgttcagtctatagggataccagcagttcagcataagcatgttttatttccaaatgattcaactaaatattgtgcctatttacattctgaactttaaactgagttatatacaaaatctgaaatataaatcatgtgctgaatctgaaataagtaacaccatcttatttttagtaaatatctccattatattttagtaaatatctccattattagaagatttaattagttgctataggatatgtagtggtcattgatatattaacagcttgaaaatttgtctgaatttatattgattgcaaagcaagaaatttgtgaacgaaaaaggaagttaacgctattttataaattcagataaatgaccgatttgacatgttcagagtaacagtttgctctagttcaatacacttcattggaaaaaaaagagccaatgatcatgaagacaataaccaatttaaaatcttactgcttgcacataattttacaaggaaaataagagcaattctatattatcaggaaatggattgaataccaatggcattaatatgacacataaactgttgcaagcttcagttatgatgtcagtaatagaaggaatgaaccttcaggatcagggctttcaggatgagcgaggaaaaacaccgtctaggcaaccttgttcaagcactccttaatctgcatgatcaacaagttgtatttttttctaagactttagtccaattgaggatagatcaagaagaggaaggagctcgcattgtaccagggcagagaggactgccgacgctgatcttgtaggactgactgtggcgctcggaatcatttgtaatcctaagcaaattaataagctacgtggatgtggttcttgtaatttatttggagtaatcagtttaatttaatcacagacacattgtgaaattacacgttttttggatgccctatagcaaattttgctatctagaatagaaactgaatgactgagacgtgaatcctaacagcccacacaactcccttgttacgaagtattcggcacatgacatcagcacaaagagaaatctgcttgtatgtccaaggtactgtaggttcaaagaaagaaattcttgactggatggctacaatttaacccttagcatggtgcagtagaaatgtttacagaccatttagcgaagattgatccatgcaggagacatttgcactatttgtaaggggtaatcatgatggaaggaaattacctttaccaaacagaaatttagtagaatcagccaaaaatctccttgattgtgcagtaaacaatagcaattggcatggtgtccagtcagctttgcttcgacaatctgaactttttttttcctacatattaaataatttgatatcaaaggttaagtcagtttgcgagatataagtttttttttaaaaaaaaagaagtgtatcatcacttcagagacaactgtgatagttaatctacatacaaaattaagtttcagggacacagaactgagtatgaatgcttagcacttcgatcagactccacaacacactatacacacttatgttgacagaattgcatctcctataggatttccagaaaaaacagataaatgaatgtataccgcctgcagattggtgtattctcacatgatcctacaggtaaatcacaggaggcctctcatctgcatgacagaagagatagattgcttttagtaagtaaactgaataatatttttcatggtttagctgtaaggagcaacttgtctgctttttttcatggtttttatagctttgggcagtgcaggacaaaagaaccttggaaccaaagtaccaaactttcattagttaatataagcagttgattgagttcaacactctgaacagcaaatatttgacagggagattaaggaagagggataatcaccatctttaacagtaagtaaatccagcctcctcggactttgacacaacggtgccatcctcaaacatggacaagttctgtgcttccccaaatctgaaacggagctccctataccattgatgaaatgcggttttgatttagtgcaactccaaacctgtacatgaaaacagtcacaaaggggaaacatcaagctgcaaagaccaaacttcttttcaaccatcataagcagaaacaaaatcaagcaaaaatggaccaacgagttgcctagattaagaaagaaagtaccccaccgtcctcttcccacccgatgccgacctcatccggacatcacctcgcgcccgcctctcgagcaccgcaccgtcttgcatcctccaccatgcttcaccactccctgtaccagcatcctccatgagaagccacccggtggaaccctgtataacactgcctctatcttcttctaacctcctcccatccaatgggcgacgcagaaaaaattggaagggctattctttctagtacaaaccgcaaaaaacttatctcagaaattggcgcgccgtcaccgtgctcctcactgccactgccagttccatgcgcgcggtcattggtgccggagatccaggatgcgctcgacggccttggatctcctcaccaccgagctggaccccgccgagccagaggccggatccagacgtcggcggtcggcagcgacggcggcagtggcggcgtgagatggaggcggatgcagaggtggcgcacccagcgacggcgacggcgtgccgcgagggaaagacgctcggcaacggcgcaggcggagcggagacggaaacggagacggagacggtggcggcggatgggacagaggcggcagagggcggagggctaagggcggctgctagggtcgagggagactgggacctgtggcgtggtcgtcggtgctccgacctcgtcgccgatggagatagcacccgccttcaccgccgctccgcgacggcgacgatgtgagggggaggcggaggagctcggagatggcggcgcgacggcggcggcggaggcggaggtggagacggaggcggaggcggaggcggaggtggcggcgcgagggggaggcggtggcgacggcggtggagaaagcggcggcagtggcgacgcgagccgaaggagacgacgatggcgatggcgcgagggggaggcggaggcggtaaaagaattcacaccacgatgcagtagtccacactccacagaccacagtaaaagaa

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CDS seq

atggatccaaatggatcggcgtttgaagaacgcgccccatttcgagacataactaatatttcttcagatgcaagagctggaagtacaacttctactaagcttcaacgcaacactaagcgtacgcttgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactttacgaaagaattttctaaagactacttaaagccattgatggacggcaaggaaaccatcagcattggagttcaaatggcaggtggtgtttcaaagaatatgatgctccagatgtcaacggatgatcgatgcaacctgaagaaagtatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttcaacaaaacaactcgcctggaagccaccttcgatgttctataa

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Protein seq

MDPNGSAFEERAPFRDITNISSDARAGSTTSTKLQRNTKRTLELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL

Function Putative B3 domain-containing protein Os11g0242900 [UniProtKB/Swiss-Prot:Q53N90]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0023310 OsKeNa_03g0023310.02 Chr03 21199651 21205860 - NAM
CDS seq

atggaggatgctggtacagggagtggtgaagcatggtggaggatgcaagacggtgcggtgctcgagaggcgggcgcgaggtgatgtccggatgaggtcggcatcgggtgggaagaggacggtttggagttgcactaaatcaaaaccgcatttcatcaatggtatagggagctccgtttcagatttggggaagcacagaacttgtccatgtttgaggatggcaccgttgtgtcaaagtccgaggaggctggatttacttactgttaaagatgatgagaggcctcctgtgatttacctgtag

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Protein seq

MEDAGTGSGEAWWRMQDGAVLERRARGDVRMRSASGGKRTVWSCTKSKPHFINGIGSSVSDLGKHRTCPCLRMAPLCQSPRRLDLLTVKDDERPPVIYL

Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0023310 OsKeNa_03g0023310.01 Chr03 21199651 21205860 - NAM
CDS seq

atggatccaaatggatcggcgtttgaagaacgcgccccatttcgagacataactaatatttcttcaggcaacactaagcgtacgcttgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactttacgaaagaattttctaaagactacttaaagccattgatggacggcaaggaaaccatcagcattggagttcaaatggcaggtggtgtttcaaagaatatgatgctccagatgtcaacggatgatcgatgcaacctgaagaaagtatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttcaacaaaacaactcgcctggaagccaccttcgatgttctataa

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Protein seq

MDPNGSAFEERAPFRDITNISSGNTKRTLELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL

Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0023310 OsKeNa_03g0023310.06 Chr03 21199651 21203401 - NAM
CDS seq

atggatccaaatggatcggcgtttgaagaacgcgccccatttcgagacataactaatatttcttcagatgcaagagctggaagtacaacttctactaagcttcaacgcaacactaagcgtacgcttgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactttacgaaagaattttctaaagactacttaaagccattgatggacggcaaggaaaccatcagcattggagttcaaatggcaggtggtgtttcaaagaatatgatgctccagatgtcaacggatgatcgatgcaacctgaagaaagtatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttcaacaaaacaactcgcctggaagccaccttcgatgttctataa

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Protein seq

MDPNGSAFEERAPFRDITNISSDARAGSTTSTKLQRNTKRTLELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL

Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0023310 OsKeNa_03g0023310.04 Chr03 21199651 21205202 - NAM
CDS seq

atggaggatgctggtacagggagtggtgaagcatggtggaggatgcaagacggtgcggtgctcgagaggcgggcgcgaggtgatgtccggatgaggtcggcatcgggtgggaagaggacggtgggcttgatgtttcccctttgtgactgttttcatgtacaggtttggagttgcactaaatcaaaaccgcatttcatcaatggtatagggagctccgtttcagatttggggaagcacagaacttgtccatgtttgaggatggcaccgttgtgtcaaagtccgaggaggctggatttacttactgttaaagatgatgagaggcctcctgtgatttacctgtag

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Protein seq

MEDAGTGSGEAWWRMQDGAVLERRARGDVRMRSASGGKRTVGLMFPLCDCFHVQVWSCTKSKPHFINGIGSSVSDLGKHRTCPCLRMAPLCQSPRRLDLLTVKDDERPPVIYL

Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0023310 OsKeNa_03g0023310.07 Chr03 21199651 21202241 - NAM
CDS seq

atggatccaaatggatcggcgtttgaagaacgcgccccatttcgagacataactaatatttcttcagatgcaagagctggaagtacaacttctactaagcttcaacgcaacactaagcgtacgcttgagctgtgtttctgtgcaaagaatgttgatccaacagctgacttgaaaaagtatatcgaagatcttgagtgcctagaccgttcaagcaaattctatgctgttgctgtgaataacacattcatgaagcaggatagagtttactttacgaaagaattttctaaagactacttaaagccattgatggacggcaaggaaaccatcagcattggagttcaaatggcaggtggtgtttcaaagaatatgatgctccagatgtcaacggatgatcgatgcaacctgaagaaagtatgggcaaaatttgcaacccgcaatcacatatacctacaatcactatgcaccttccatttcaacaaaacaactcgcctggaagccaccttcgatgttctataa

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Protein seq

MDPNGSAFEERAPFRDITNISSDARAGSTTSTKLQRNTKRTLELCFCAKNVDPTADLKKYIEDLECLDRSSKFYAVAVNNTFMKQDRVYFTKEFSKDYLKPLMDGKETISIGVQMAGGVSKNMMLQMSTDDRCNLKKVWAKFATRNHIYLQSLCTFHFNKTTRLEATFDVL

Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0023310 OsKeNa_03g0023310.03 Chr03 21204164 21205860 - NAM
CDS seq

atggaggatgctggtacagggagtggtgaagcatggtggaggatgcaagacggtgcggtgctcgagaggcgggcgcgaggtgatgtccggatgaggtcggcatcgggtgggaagaggacggtttggagttgcactaaatcaaaaccgcatttcatcaatggtatagggagctccgtttcagatttggggaagcacagaacttgtccatgtttgaggatggcaccgttgtgtcaaagtccgaggaggctggatttacttactgttaaagatgatgagaggcctcctgtgatttacctgtag

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Protein seq

MEDAGTGSGEAWWRMQDGAVLERRARGDVRMRSASGGKRTVWSCTKSKPHFINGIGSSVSDLGKHRTCPCLRMAPLCQSPRRLDLLTVKDDERPPVIYL

Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0023310 OsKeNa_03g0023310.05 Chr03 21202965 21205202 - NAM
CDS seq

atggaggatgctggtacagggagtggtgaagcatggtggaggatgcaagacggtgcggtgctcgagaggcgggcgcgaggtgatgtccggatgaggtcggcatcgggtgggaagaggacggtgggcttgatgtttcccctttgtgactgttttcatgtacaggtttggagttgcactaaatcaaaaccgcatttcatcaatggtatagggagctccgtttcagatttggggaagcacagaacttgtccatgtttgaggatggcaccgttgtgtcaaagtccgaggaggctggatttacttactgttaaagatgatgagaggcctcctgtgatttacctgtag

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Protein seq

MEDAGTGSGEAWWRMQDGAVLERRARGDVRMRSASGGKRTVGLMFPLCDCFHVQVWSCTKSKPHFINGIGSSVSDLGKHRTCPCLRMAPLCQSPRRLDLLTVKDDERPPVIYL

Gene Transcript Chromosome Start End Strand Source
OsKeNa_03g0023310 OsKeNa_03g0023310.08 Chr03 21199669 21205945 - IsoSeq
CDS seq

cttttactgtggtctgtggagtgtggactactgcatcgtggtgtgaattcttttaccgcctccgcctccccctcgcgccatcgccatcgtcgtctccttcggctcgcgtcgccactgccgccgctttctccaccgccgtcgccaccgcctccccctcgcgccgccacctccgcctccgcctccgcctccgtctccacctccgcctccgccgccgccgtcgcgccgccatctccgagctcctccgcctccccctcacatcgtcgccgtcgcggagcggcggtgaaggcgggtgctatctccatcggcgacgaggtcggagcaccgacgaccacgccacaggtcccagtctccctcgaccctagcagccgc

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Protein seq

LLLWSVECGLLHRGVNSFTASASPSRHRHRRLLRLASPLPPLSPPPSPPPPPRAATSASASASVSTSASAAAVAPPSPSSSASPSHRRRRGAAVKAGAISIGDEVGAPTTTPQVPVSLDPSSR

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr03 21204843 21204975 - OsKeNa_03g0023310.04,OsKeNa_03g0023310.05 OsKeNa_03g0023310.04,OsKeNa_03g0023310.08,OsKeNa_03g0023310.05 All
SE Chr03 21200519 21201033 - OsKeNa_03g0023310.07,OsKeNa_03g0023310.06 OsKeNa_03g0023310.08,OsKeNa_03g0023310.07,OsKeNa_03g0023310.01,OsKeNa_03g0023310.06 All
SE Chr03 21200519 21201033 - OsKeNa_03g0023310.04,OsKeNa_03g0023310.02 OsKeNa_03g0023310.01,OsKeNa_03g0023310.04,OsKeNa_03g0023310.02,OsKeNa_03g0023310.08 All
A5 Chr03 21200519 21200893 - OsKeNa_03g0023310.04,OsKeNa_03g0023310.02 OsKeNa_03g0023310.04,OsKeNa_03g0023310.07,OsKeNa_03g0023310.02,OsKeNa_03g0023310.06 All
A5 Chr03 21204843 21204980 - OsKeNa_03g0023310.08 OsKeNa_03g0023310.08,OsKeNa_03g0023310.02,OsKeNa_03g0023310.03,OsKeNa_03g0023310.01 All

Expression

Leaf Root Panicle
FPKM 0.672308 4.131742 7.031319

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_03g0562000 RBH 2.892160 2.255277 2.696196
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db Os03g0562000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_03g0023460 RBH 0.949648 4.578158 12.714923
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_03g0023340 RBH 2.311965 1.499527 16.450228
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_03g0023380 RBH 0.678877 0.123736 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_03g0023170 RBH 12.196071 10.702356 25.460316
Minghui 63 | MH63RS3 | HZAU OsMH63_03G0343800 SBH 2.9201755 12.5689125 9.893421
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_03g0022940 RBH 0.239247 0.459218 1.952846
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_03G0345000 SBH 3.9925955 15.2179035 13.5500385
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_03g0023210 RBH 0.248534 0.272078 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_03g0023260 RBH 0.960227 5.425174 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_03g0023310 RBH 4.358679 32.877029 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_03g0023010 RBH 0.769832 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_03G023030 RBH 1.270754 2.698550 3.371190
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_03g0022990 RBH 1.870727 22.770267 9.731681
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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