Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0021570 | OGI:03043860 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:18391520-18392207 | ||||||||
| Gene Symbol | BIP102, - | ||||||||||
| DNA seq | tgcccggagaaaattcagagctgattaaagaggatcgctttccgatgagtgcaggaatgacatttctcctgactcgtcataaatttggagtccatccatatatgttggtgagcctattacctcctttgtatgtctgacattgaagtgttttctgatttttcagtgaacagagtatttttatgcaatgttgtttccagaattttgcattcgcgtgtttttcttttctgtattattgttttctgcattattgacataacaatgttccttgtataccaggttactaaacttattattgagaaggcaggcgtcgtgtttgagtgcgatcgctgtgtggacgatcatcatgactcactgcgcggtgctgctgagcacattaagaaaatatcttgcattgacacacagagttgggatttactgaaacttgcggcagcgttcaaggtgatatgctgccctaaagaaaaagttgaacttggagaacatgtaaccataatattttgtgaatgcgtacgcattttgatggaaaattctcattcaactaaggccgagtttagttccaaaatttttcttcaaacctccaacttttctatcacattaaaatttttctacacacacaaacttccaacttttctgtcacatcgttccaatttcaaccaaacttccaattttggagtaaactaaacacacccta
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| CDS seq | atgagtgcaggaatgacatttctcctgactcgtcataaatttggagtccatccatatatgttggttactaaacttattattgagaaggcaggcgtcgtgtttgagtgcgatcgctgtgtggacgatcatcatgactcactgcgcggtgctgctgagcacattaagaaaatatcttgcattgacacacagagttgggatttactgaaacttgcggcagcgttcaaggtgatatgctgccctaaagaaaaagttgaacttggagaacatgtaaccataatattttgtgaatgcgtacgcattttgatggaaaattctcattcaactaaggccgagtttagttccaaaatttttcttcaaacctccaacttttctatcacattaaaatttttctacacacacaaacttccaacttttctgtcacatcgttccaatttcaaccaaacttccaattttggagtaaactaa
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| Protein seq | MSAGMTFLLTRHKFGVHPYMLVTKLIIEKAGVVFECDRCVDDHHDSLRGAAEHIKKISCIDTQSWDLLKLAAAFKVICCPKEKVELGEHVTIIFCECVRILMENSHSTKAEFSSKIFLQTSNFSITLKFFYTHKLPTFLSHRSNFNQTSNFGVN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0021570 | OsLima_03g0021570.01 | Chr03 | 18391520 | 18392207 | + | NAM | ||
| CDS seq | atgagtgcaggaatgacatttctcctgactcgtcataaatttggagtccatccatatatgttggttactaaacttattattgagaaggcaggcgtcgtgtttgagtgcgatcgctgtgtggacgatcatcatgactcactgcgcggtgctgctgagcacattaagaaaatatcttgcattgacacacagagttgggatttactgaaacttgcggcagcgttcaaggtgatatgctgccctaaagaaaaagttgaacttggagaacatgtaaccataatattttgtgaatgcgtacgcattttgatggaaaattctcattcaactaaggccgagtttagttccaaaatttttcttcaaacctccaacttttctatcacattaaaatttttctacacacacaaacttccaacttttctgtcacatcgttccaatttcaaccaaacttccaattttggagtaaactaa
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| Protein seq | MSAGMTFLLTRHKFGVHPYMLVTKLIIEKAGVVFECDRCVDDHHDSLRGAAEHIKKISCIDTQSWDLLKLAAAFKVICCPKEKVELGEHVTIIFCECVRILMENSHSTKAEFSSKIFLQTSNFSITLKFFYTHKLPTFLSHRSNFNQTSNFGVN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0145500 | RBH | 2.759188 | 0.193097 | 2.199765 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g28270 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0145500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0021050 | SBH | 0.171690 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020900 | SBH | 0.119150 | 0.035115 | 0.072934 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0021740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0269000 | SBH | 0.433808 | 0.735119 | 0.14582 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021290 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0289600 | RBH | 0 | 0 | 0.022013 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020760 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0021660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021530 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020630 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021330 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020460 | SBH | 0.0 | 0.0 | 0.0 |
