Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0145500 | OGI:03043860 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:2516847-2519234 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACTGTGGAGGCGTGGAAAAATACATCTCGCATGGAGGAGACGAGAAGGCAGCGGCGGCGACGCAAGCGCGAGTGCGAGTGTCAACCGCGTGACGGCGCGACGGCAACACTGCGCTCTCCCCGGCGGCGGCGCTCTCCCCTCCGCTGGCCACCTTCCCACCGGTGAGTATCTCTTCATTCCCCTCTCTTCTCCCTGTACTACCTAGGGTTTGGAACTTTGGATCTTGGTTCTTGAAGCCTAGGGTTCTTGGTTCTCACCGGACCGTCTCCTACCTAGGATTCTGTCGCCGCCTCCGTCGCCGTCCTCGCCGTCTTGGAGGTCGCCGTCATATCCGCCGTCCCCTCGAACTCCGCGGCTGATGCCTGTTCTTTTTTGTTTTTTCGCAAAATTCCTTTTCATCTTTCGCTGCTTAATTCTGCTTGTTATGCGTATGAATCAGGAATCCACAGATTCTCTTTAATGTCAACTAGTATAGTTGGTTCCAATCTTCAAGAATCACCATTTCTACTTGTATGTTTCTCAGCATGCTGATGTTGTTATTAGGGAGGTGATTCTGTGACGGCTCAGTAGAACTCTATTGTGCATATGTTCTTCTATTTTGATGAATCACCAATGATTATTTTGTGTGCCATAAAACTCTATTGACAAATCACCAATAATACTTCCAATGCTTTTTTCTTTGGTAAAAACCACAAATGAAGGTCCCTTGGACTAATTACCATATTACTTCAATTTATAATATAAATGGAATATGCATTATTTGTTTTATTATAGTACTTTCCTTGGTTATTTTTCTATAGTTCATCTTCAGGAATGCTAGATCTATTGTTGCTGCGTATGGGGTGAAATAAAGGAAATGCAATGCATTGCTGACTTTGTGGGGAATGGGAGGAAGTCCTGATGTTTTTTTTATTAAGATAATATATGCAAAATGTGTGCACTGATATTATGTTAGACCCTTGCATTTGATTTCTCTAGACTCCTACAGAACTTATATTATTGCTAGTGTCAGAATTTGAAAAGCCACGCAATATAAAAAATGCACATAAAAATTTCTTTGTACATGTACAGGTAATCTAGGAGCCAACCATATGCTCATATAGACCGTGTTTAGTTCCACTCAAACTTCCTCTCAACTCCCAACTTTCCATAACATCACATCACATCCAAAACTTTCCTACACACATAAACTCCTAACTTTTTTTCCAAACTACCAACTTTCCCCAAACTTCTCCCCAATTTCAGGAACTAAACACAGCCCTAATTGACCTGCTAGTAATTTGCTTTAAAATTGGTACAACTATATGAACTGGAAACTTTAGTAGTACTATATACTGCTCTAACTATTACTGGTTTTTAGACCTATATATGTGCACGCTCCATATCCATATGTACTCTCATTGTTTCTTGATATACTAGTTAGGAGGACGATTACAGGCACATATGATTCTTTCCCCCAATTCAGAAGTACTTGATATTGTCCTATTCATATGCATGCTCTTGTATTAGAACTTTAGGAGCAGGAAAAGAAAAGGCAAGTCACTGTTTTATTTTTGTTAGCCATCCAACTTACAGTCAGCAAATATTTCCTATGTCATTTTTTTGTCTTAATGTTATTCTATTTCCTACATGTGAACTTTTCAATAGTATAGTATTGATTTGATATATGCATCAATGTTCTTGGCCATCAGCAATTAAGCAAGTATATTTTTTTCTGATTTTTTATCATCAATCACACACACCTGTTATATTTTGCTGAAAGATAGATTCTTGGTTGAGATGTGCAAGCAGCAAGCAACAACCTACAGAGGGCCGTCCATTATTTTAAATTTCATTTTTGGTAGTTAAAGGCCGTGTTTAGTTTCAAAGTTTTTCTTCAAACTTCAAACTTTTCTATCACATCAAAACTTTTCTACACACACAAACTTTCAACTTTTCCGTCACATCGTTCCAATTTCAACCAAATTTCTAATTTTGGCGTGAACTAAACACAGCCAAAATTATGAAAAATGCACATAAAAATTTCTCTTTTCTACATCATAGATTGAGATCACAACCACCAATTCGAAACAATTGCTCATTGCACAGAAGTGTTCCTTAAATTATGCAGTTTCAGTCAGAAACTAAAGGGAACTTTTTTCTCTGCAGGCTTTGGGAAGAAGGAAGTCTGCAAGGATACTGCTTTTTTGCGGCATCAGCAAATGTTGATCCCTGAACCTTTGAATATGTATATTGTTGATGCAACCTTTGAATAGAACAAATGTTCAGACTTGTTTAATTTATTTAATTTGTCAGGTCGTCTCCTGCTGCTCGTCAGCTCTCCACTCATCTTGGACTTGTTTAATTTGTGATGTTTCCATTTTCATTGGTTCATACTTTCAGTCAT
More
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| CDS seq | TTAAAGGCCGTGTTTAGTTTCAAAGTTTTTCTTCAAACTTCAAACTTTTCTATCACATCAAAACTTTTCTACACACACAAACTTTCAACTTTTCCGTCACATCGTTCCAATTTCAACCAAATTTCTAATTTTGGCGTGAACTAA |
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| Protein seq | LKAVFSFKVFLQTSNFSITSKLFYTHKLSTFPSHRSNFNQISNFGVN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0145500 | OsNip_02t0145500-01 | Chr02 | 2516847 | 2518586 | + | RAP2018-11-26 | ||
| CDS seq | - |
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| Protein seq | - |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0145500 | OsNip_02t0145500-02 | Chr02 | 2516879 | 2519232 | + | RAP2018-11-26 | ||
| CDS seq | TTAAAGGCCGTGTTTAGTTTCAAAGTTTTTCTTCAAACTTCAAACTTTTCTATCACATCAAAACTTTTCTACACACACAAACTTTCAACTTTTCCGTCACATCGTTCCAATTTCAACCAAATTTCTAATTTTGGCGTGAACTAA |
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| Protein seq | LKAVFSFKVFLQTSNFSITSKLFYTHKLSTFPSHRSNFNQISNFGVN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0145500 | OsNip_02t0145500-03 | Chr02 | 2516849 | 2519234 | + | IsoSeq | ||
| CDS seq | TGTGGAGGCGTGGAAAAATACATCTCGCATGGAGGAGACGAGAAGGCAGCGGCGGCGACGCAAGCGCGAGTGCGAGTGTCAACC |
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| Protein seq | CGGVEKYISHGGDEKAAAATQARVRVST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 2517009 | 2518997 | + | OsNip_02t0145500-02 | OsNip_02t0145500-03,OsNip_02t0145500-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.759188 | 0.193097 | 2.199765 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0406701 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0145500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021290 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021570 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0021660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021530 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
