Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0016830 | OGI:03033550 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:13075207-13076835 | ||||||||
| Gene Symbol | prx40 | ||||||||||
| DNA seq | ggtgatcaaattaacatcttctcggagttttcactctcaaatagtggctttcatcagaaatgtcaactgcccgcgactgcgtacaaaaactcagtgcatttaacttttgaactcatcactattacaagaggaaatggaaatcaaagaacaccagaacgtttaaacaatattcacttcactcacacaaactgaattaaatgagctaattaaaccacaatgaagaactctcatccacaggagaaggtaattaattaacatacttaagcactactaattcattcggaactcatttaatttaggccatctcgcgttcttgctagtagtagttcaccttcctgcagttgacgcggacctcgccttggctcccgacgagcgggctcaggctggccatcctcaccatggactcggcgaagtctcgccggaacgcgtccgggttggcggcgtagaacctgacgagcccgtcggtggcgccgaggccgccgccggcgaacagctgctggtccgagtgcaggagccccctggcgcgcagcagcgaggcgtagtacgcggcgtcgaacctcgccggcgtcgggtcgagcggcgcgaggttgtcgtcgccggcgccggcggtacgcgggcaggttcccccgagcgacgcggcgagggaggcgtcgagcgtggtcgtctcgttgtagaggcggtcgcggaagttggtgcagcgggagaagcccagcgtgtgggcgccggagaggaggacgaggtcctgcacggagaggccctgcgcggcgaagctggagacgaggccgtcgaggttgagcgtcggcgccgggatgctgctgttcgccgccgcctggctcgccgtccgcgcgtccctccggcccagcggcacgtggtacgacggccctcccagctgcgcgcgcacacacacatgcatgaatgcattcagttcagtgagcgatgcctttgccaaagctaggtttcaggtatggtacgcacggcgacgatggagtcgcgcgcggcgacggcgacgatgtcggcgcaggagacgacgttgcggcggcaggcggcgttgacggcgtccttgatgcggtcgatgacgtcgaagccgcggacggagttcatgttgggcgccgcgttcttctctcccgtgaagaatggcgtgtcgtccagcaggatggacccgtcgcaaccctgatcacgcatatgtccatccattaccgatcatcacaagcatatcgacagatcgatcgatcaagaaaacaatcaacaagatcttaacgtgttcatgccatgctgatcgatgccgatttgatttacttacgttgacgaagcagtcgtggaagtgcaggcgcaggagcgaggcgcccatgcggggctccgccgcgacggcctcctcgacgatccgcttgatggtgggcagcgccgccgggcacaagccgtcgtagaagtgcgggtcaagttgcgcgctgctcatcgtcgcggccaccactacagcaaacgccaccgccaccgccgccatagcagaggacaccatggcaagctagcgagctatagatgacacggctaacagcacaagctcaattaattgattagctggtcgaggcttaatttgctactgatggttaattagttaagctcgatcgagtgcgt
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| CDS seq | atggtgtcctctgctatggcggcggtggcggtggcgtttgctgtagtggtggccgcgacgatgagcagcgcgcaacttgacccgcacttctacgacggcttgtgcccggcggcgctgcccaccatcaagcggatcgtcgaggaggccgtcgcggcggagccccgcatgggcgcctcgctcctgcgcctgcacttccacgactgcttcgtcaacctgggagggccgtcgtaccacgtgccgctgggccggagggacgcgcggacggcgagccaggcggcggcgaacagcagcatcccggcgccgacgctcaacctcgacggcctcgtctccagcttcgccgcgcagggcctctccgtgcaggacctcgtcctcctctccggcgcccacacgctgggcttctcccgctgcaccaacttccgcgaccgcctctacaacgagacgaccacgctcgacgcctccctcgccgcgtcgctcgggggaacctgcccgcgtaccgccggcgccggcgacgacaacctcgcgccgctcgacccgacgccggcgaggttcgacgccgcgtactacgcctcgctgctgcgcgccagggggctcctgcactcggaccagcagctgttcgccggcggcggcctcggcgccaccgacgggctcgtcaggttctacgccgccaacccggacgcgttccggcgagacttcgccgagtccatggtgaggatggccagcctgagcccgctcgtcgggagccaaggcgaggtccgcgtcaactgcaggaaggtgaactactactag
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| Protein seq | MVSSAMAAVAVAFAVVVAATMSSAQLDPHFYDGLCPAALPTIKRIVEEAVAAEPRMGASLLRLHFHDCFVNLGGPSYHVPLGRRDARTASQAAANSSIPAPTLNLDGLVSSFAAQGLSVQDLVLLSGAHTLGFSRCTNFRDRLYNETTTLDASLAASLGGTCPRTAGAGDDNLAPLDPTPARFDAAYYASLLRARGLLHSDQQLFAGGGLGATDGLVRFYAANPDAFRRDFAESMVRMASLSPLVGSQGEVRVNCRKVNYY |
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| Function | Peroxidase 52 [UniProtKB/Swiss-Prot:Q9FLC0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0016830 | OsLima_03g0016830.01 | Chr03 | 13075207 | 13076719 | - | NAM | ||
| CDS seq | atggtgtcctctgctatggcggcggtggcggtggcgtttgctgtagtggtggccgcgacgatgagcagcgcgcaacttgacccgcacttctacgacggcttgtgcccggcggcgctgcccaccatcaagcggatcgtcgaggaggccgtcgcggcggagccccgcatgggcgcctcgctcctgcgcctgcacttccacgactgcttcgtcaacctgggagggccgtcgtaccacgtgccgctgggccggagggacgcgcggacggcgagccaggcggcggcgaacagcagcatcccggcgccgacgctcaacctcgacggcctcgtctccagcttcgccgcgcagggcctctccgtgcaggacctcgtcctcctctccggcgcccacacgctgggcttctcccgctgcaccaacttccgcgaccgcctctacaacgagacgaccacgctcgacgcctccctcgccgcgtcgctcgggggaacctgcccgcgtaccgccggcgccggcgacgacaacctcgcgccgctcgacccgacgccggcgaggttcgacgccgcgtactacgcctcgctgctgcgcgccagggggctcctgcactcggaccagcagctgttcgccggcggcggcctcggcgccaccgacgggctcgtcaggttctacgccgccaacccggacgcgttccggcgagacttcgccgagtccatggtgaggatggccagcctgagcccgctcgtcgggagccaaggcgaggtccgcgtcaactgcaggaaggtgaactactactag
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| Protein seq | MVSSAMAAVAVAFAVVVAATMSSAQLDPHFYDGLCPAALPTIKRIVEEAVAAEPRMGASLLRLHFHDCFVNLGGPSYHVPLGRRDARTASQAAANSSIPAPTLNLDGLVSSFAAQGLSVQDLVLLSGAHTLGFSRCTNFRDRLYNETTTLDASLAASLGGTCPRTAGAGDDNLAPLDPTPARFDAAYYASLLRARGLLHSDQQLFAGGGLGATDGLVRFYAANPDAFRRDFAESMVRMASLSPLVGSQGEVRVNCRKVNYY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0016830 | OsLima_03g0016830.02 | Chr03 | 13075285 | 13076835 | - | IsoSeq | ||
| CDS seq | atgttaattaattaccttctcctgtggatgagagttcttcattgtggtttaattagctcatttaattcagtttgtgtgagtgaagtgaatatt |
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| Protein seq | MLINYLLLWMRVLHCGLISSFNSVCVSEVNI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr03 | 13076095 | 13076507 | - | OsLima_03g0016830.02 | OsLima_03g0016830.01,OsLima_03g0016830.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.091018 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0235000 | SBH | 0.000000 | 0.179738 | 0.856737 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g22020 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0235000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0017110 | RBH | 0.0 | 9.842962 | 0.406076 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016950 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016960 | RBH | 0.0 | 11.738766 | 0.896377 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016960 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016750 | RBH | 0.0 | 7.459991 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0208600 | RBH | 1.2368115 | 8.1869735 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016610 | RBH | 0.0 | 0.971560 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0213300 | RBH | 0.935811 | 1.894304 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0027330 | SBH | 0.221365 | 0.326599 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016910 | RBH | 0.0 | 17.341703 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016790 | RBH | 0.0 | 0.667443 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016710 | RBH | 0.0 | 6.129101 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016660 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016640 | RBH | 0.0 | 0.000000 | 0.000000 |
