Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_03g0235000 | OGI:03018740 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr03:7128273-7130338 | ||||||||
| Gene Symbol | POXN, poxN, prx38, prxRPN, RPN, poxN/PRX38 | ||||||||||
| DNA seq | GATAAAACCATATGGCAGTTGCATATTCTTTCTTTTACTCTGATAGACACAGCGCGTTTGTCTGTGCTCTAATAATTGGTGATACACCCACTGAAAATGCAGCTGCAGATTCGTGTAGGACGAGCAACTTTGCATGCTAATTGCTTATTCTACTCGTGCATTGGAGAGAGAATCCTAGATAGCTTGAACAAAACGAAACATGTAGCGCTCCACAACACATTAAAAACGACAGATTCACACTTGAGTCCAAGAAGACGATATAGCTTCTGGCAAATCCAAGATGGGGTCATGGCAGATGCAAAAAATCTTTGCCTTTTTGCTCATCAGTTGACGGCCCTGCAGTTCTTGCGAATCTGGCCGGCAGAGCCGGTGAGAGGGCTGATGTTGCCCATCTTGACCATGGAGTTGCCGAAGTCGCAGGAGAAGCGCTGGCCGTTGGCGCTGTAGGCCTGCACCAGCGCCTTGGTGGCGGCGACGGCGGGGTCGCCGGAGCTGGAGACGAGGCCCTGGTCGGAGGCGAGGAGGCCCTTGTTGGCCAGCAGGTTCTGGTAGTAGTGGTTGTCGAACGCGTCGGCGGAGTTGACGTCCAGCGCCGCCAGCTGGTCAGCGCCGCCGCGGCACACCTGCTGCAGGCTGGACGCCAGCGACGAGTCCAGCGTCGGGTCGACGGAGTTGGTCGCCGAGAAGTTCGCCAGCCGGTTGCTGAACAGCAGGCAGCGAGATCGCCCGATCGTGTGCGCCCCTGTTCAGGTTCAGAAGAGTTCAGATCAGTCTTGGATTGATTCGTAGCCAAACATAACTATATTTTGAAACGGAGGGAGTAACAAATTGGTGCAGAAACTAGTTTTTGATCTGACAAATGCTAAATCATGCATAATCCACGTAAACTGCTATGCATGCCACACCGAGTAGAGTAGATGCGACATCGTTATTGATATCATAATTTGTGTCTTTATCAATTCATTTGTCAAATCCCAATCAATGTTTGATTGAAGAATTGACGAGGTAATTTTTGCTCGATGCATGAAGATATAGGAGATAGATAGAGGTACCTGATAAGACCACAACATCGGTTGCGTTGAGACCGACATCCTTGAACCTCGCAGTGATAACGCTGATCGAATCGAAAGGGCTAGGCAAGTTACTGTTCGCCCCCGTCTGATTTGCCACCAGACCATCTCTTCTTCCCAGGAGGACATCATAATCAGGTCCTCCACTCTGCAAAGACCAACACAGATATATTCAGCATGACTGAAAAATCAATTGTTCTTTTGCTCGATTGGTAATACTATAGTGCTTTACTATCAAAGATGAATTTTCATCCCTCCATTCGAGACATAGGAACGTACAAGTAGTACTCCGTATTTAGCTGCAAGGGCTACTATGTCGGCGCAGGAGACGACTCCCGGGCAGGCGCTCTCGAGGTCGGCCTTTATCGCATCGATGACTTCGTACCCTCTCACCGAGTTGTTGTTCGGCGCCGCGAACTTCTCGCTGTTTGTGCCGTCAAGGAGGATGGACGCGTCACAGCCCTGCAGAATTCACAGTGTGTCGGTAAGAAGTTCAGAGTTCAGTCTCTGAAGTTCAGTAACATATATCACATGAAAGTTCAGAGTCCTCTATACAGGTTAATTGAGATCGTTAATTTCATTTTCTTGTTTCGGTATGTGTACGTTTTGAATGCGACTTGCATGCACGTAGTGTATCTAGCGCACTGCAATGAGCAGCAGAAAAAGGGGAAAAATAAAATAGTTGGATGATTACATTGACGAAGCAGTCGTGGAAGTGAAGCCTGAGCAGGGAGGCGCCCATGCGCATCTCGGCCTTCATCGCGGCGGCCACGCGGGACCGGACGATGCGGTAAACCTGGGGGCAGCAATAGTCGTAGTAGTCGTCCGTCAGCTGCCCGCTCGCCGCCGCGGCGGCGAGGCCCAGCAGAACGACGATATTGCAGAGGAAACTCAGGCAGCTAGCCGTGCGATCTCCACGAGTAGCGTACTCCATGGCCAATCGATCGAATTGTAATTGATCTTTTACTTATGCACTTGTGATTGGACTCGATGTCT
More
|
||||||||||
| CDS seq | CTCGAATGGAGGGATGAAAATTCATCTTTGATAAGTGGAGGACCTGATTATGATGTCCTCCTGGGAAGAAGAGATGGTCTGGTGGCAAATCAGACGGGGGCGAACAGTAACTTGCCTAGCCCTTTCGATTCGATCAGCGTTATCACTGCGAGGTTCAAGGATGTCGGTCTCAACGCAACCGATGTTGTGGTCTTATCAGGGGCGCACACGATCGGGCGATCTCGCTGCCTGCTGTTCAGCAACCGGCTGGCGAACTTCTCGGCGACCAACTCCGTCGACCCGACGCTGGACTCGTCGCTGGCGTCCAGCCTGCAGCAGGTGTGCCGCGGCGGCGCTGACCAGCTGGCGGCGCTGGACGTCAACTCCGCCGACGCGTTCGACAACCACTACTACCAGAACCTGCTGGCCAACAAGGGCCTCCTCGCCTCCGACCAGGGCCTCGTCTCCAGCTCCGGCGACCCCGCCGTCGCCGCCACCAAGGCGCTGGTGCAGGCCTACAGCGCCAACGGCCAGCGCTTCTCCTGCGACTTCGGCAACTCCATGGTCAAGATGGGCAACATCAGCCCTCTCACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAGGGCCGTCAACTGA
More
|
||||||||||
| Protein seq | LEWRDENSSLISGGPDYDVLLGRRDGLVANQTGANSNLPSPFDSISVITARFKDVGLNATDVVVLSGAHTIGRSRCLLFSNRLANFSATNSVDPTLDSSLASSLQQVCRGGADQLAALDVNSADAFDNHYYQNLLANKGLLASDQGLVSSSGDPAVAATKALVQAYSANGQRFSCDFGNSMVKMGNISPLTGSAGQIRKNCRAVN |
||||||||||
| Function | Peroxidase 54 [UniProtKB/Swiss-Prot:Q9FG34] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0235000 | OsNip_03t0235000-01 | Chr03 | 7128273 | 7129609 | - | RAP2018-11-26 | ||
| CDS seq | CTCGAATGGAGGGATGAAAATTCATCTTTGATAAGTGGAGGACCTGATTATGATGTCCTCCTGGGAAGAAGAGATGGTCTGGTGGCAAATCAGACGGGGGCGAACAGTAACTTGCCTAGCCCTTTCGATTCGATCAGCGTTATCACTGCGAGGTTCAAGGATGTCGGTCTCAACGCAACCGATGTTGTGGTCTTATCAGGGGCGCACACGATCGGGCGATCTCGCTGCCTGCTGTTCAGCAACCGGCTGGCGAACTTCTCGGCGACCAACTCCGTCGACCCGACGCTGGACTCGTCGCTGGCGTCCAGCCTGCAGCAGGTGTGCCGCGGCGGCGCTGACCAGCTGGCGGCGCTGGACGTCAACTCCGCCGACGCGTTCGACAACCACTACTACCAGAACCTGCTGGCCAACAAGGGCCTCCTCGCCTCCGACCAGGGCCTCGTCTCCAGCTCCGGCGACCCCGCCGTCGCCGCCACCAAGGCGCTGGTGCAGGCCTACAGCGCCAACGGCCAGCGCTTCTCCTGCGACTTCGGCAACTCCATGGTCAAGATGGGCAACATCAGCCCTCTCACCGGCTCTGCCGGCCAGATTCGCAAGAACTGCAGGGCCGTCAACTGA
More
|
|||||||
| Protein seq | LEWRDENSSLISGGPDYDVLLGRRDGLVANQTGANSNLPSPFDSISVITARFKDVGLNATDVVVLSGAHTIGRSRCLLFSNRLANFSATNSVDPTLDSSLASSLQQVCRGGADQLAALDVNSADAFDNHYYQNLLANKGLLASDQGLVSSSGDPAVAATKALVQAYSANGQRFSCDFGNSMVKMGNISPLTGSAGQIRKNCRAVN
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_03g0235000 | OsNip_03t0235000-02 | Chr03 | 7128273 | 7130338 | - | IsoSeq | ||
| CDS seq | ATGACCCCATCTTGGATTTGCCAGAAGCTATATCGTCTTCTTGGACTCAAGTGTGAATCTGTCGTTTTTAATGTGTTGTGGAGCGCTACATGTTTCGTTTTGTTCAAGCTATCTAGGATTCTCTCTCCAATGCAC |
|||||||
| Protein seq | MTPSWICQKLYRLLGLKCESVVFNVLWSATCFVLFKLSRILSPMH |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.179738 | 0.856737 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0109600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13210 | RBH | 0.000000 | 0.113095 | 0.206322 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0235000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009990 | RBH | 0.0 | 17.051273 | 61.810951 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009850 | RBH | 0.0 | 10.707139 | 0.260655 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009910 | RBH | 0.000000 | 21.873028 | 52.885105 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009820 | RBH | 0.0 | 0.786356 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009710 | RBH | 1.179354 | 37.383377 | 7.763674 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0117600 | RBH | 0.710888 | 115.09676 | 0.6325665 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009630 | RBH | 0.0 | 0.903858 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0117500 | RBH | 0.8140265 | 155.9259645 | 0.777991 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009720 | RBH | 0.0 | 0.320250 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009830 | RBH | 0.197816 | 23.367628 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0009720 | RBH | 0.0 | 40.051628 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009790 | RBH | 0.193039 | 6.622882 | 0.065473 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009740 | RBH | 0.0 | 19.924496 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009740 | RBH | 0.000000 | 3.662923 | 4.986437 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009640 | RBH | 0.0 | 121.169945 | 0.682657 |
