Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0015230 | OGI:02037890 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:13985869-13989157 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacttaacatactcctttaaacaataaaaaaatgcaaagcagctaacaataccaaacatataatttgtcatagcttgataaacacttgaaaagctcaaagcaagatatttgtatttatggtattgaattaaaccccacagcctacaatatcttatcaggaaaaaagactcagatcttcaccaacaatacttcaaatatatccttcatggccagcatctaaaaatagcatttacatgatcaccaatgaggtgtatacagctcctgccgtgggtccacagaagttcatgtgatctgcaaaacacaaatttacatccatttcacttgtaagaaatggtcatcacatataattccaagaagaatattgtctatagttgccttaattgaagtaaaaaagtagatagcaagtgtgaacattccagaaacactaacatttgtcaaaacgcctctatattttccttgaccacaatattaatctaaagtggtcatattgctaaactatgcacacacctgcagttgaagtggcagcctcgaaaggatctaccactcttaaaatctggagaccaatatctttcatggaattccctcaaggaaagggttccactattagactggaaaaagggaaacatatcaaatcatgaaaaaggcataatctgaaattggaatagcgtatatctttttaagatttaatttaatcctggagtccacacttttttcgtgaagctacaaataaataatatatccataatggtgatgaaaaggatttaaaacatggatagtagcactggattaaaaacatgaaaagcaccttacaatccaaaagcttgagaagacattagcatcaggcatcttcctaagaaaccaaatgctcttttagccacatcaaaattttcaagcaaactacgtatgtccaaataaaaagaaataacaaaccgtccaagcaagcatatgccgatggataaaatttatgaattacatcattagtaattagaagtcatcagcacaaagcaaatattcaaacttcccaaaaacaatgcaaattatcagaggagaaacatcaaattccatgcttataacttgtagaatatacactggattcaactgatgcactttttaaggaaatgaagccatagttccattgtcctgagctccaaaattgatcattggtatatacaaaggggatattcacttatatttaagtctgctagaataaaactctcttgacctatggagttatatgtgcatacatacaaactgaaagagacgcttacatttaagcttgaggacatttcaacctgataggctcatgtcaaaccaaccgttgaaacaattccgaaattaagtgattaccagctagagtgacagccaaaagcaagctcaacattgcaatggggaaattgcgattagggaaatcttgcccgtgattgcaatttcggaacaaaattttcaaaattttgccccccccccccccaccggcaagcatatatctcacccgaaatttctccttttttcatgtttttgtgaatttggtcaaagtttattctaaatcattcaaaattcgtcaatttttcaaataaattcagtgattttggttctttcgccccctccccccacggaaaaaaccccaatttctagaatgcaaaccctgaatattgcagtaaaactacagtgaaatacttggtgcacaaatgtcattacgggtggcaccgcttcaggttttttttttcttttgcaaaaatttgagagcattacatcacctgtggcaattgtagattgatgcatccttccgctgcttgtactcatggttctgttgaaccttagcttgctactgcttacaattgagcaaagcgtacctcatccaagcttgctatcttctttaactcgagagcacttaaattagtggtattccctacggtgtttgccagtaaattagaattagttaactcaaacagtacatgatatatagtgaagaaatcacaagcttaaaagctgttacataccatcgatctgtataaattaatttcagagatatacaattagcaattaactggcagcggcataacagctttgcaaaagaagcgaacatgatgtgtattatttacttgtcactgcaagcaatggtgacgtaaagcttcctgcattaccgggccgagctgcaaaggtgagtcgtgataaactttattacattcagatcacaaatgttgattaaaatattttttttgagcattcaatcgatccagagtactacctgatgtagatcgaaccactatacatgaatatttgtcagaaccactatcaatgtttgtcgttgatgaaatcccactgatggatctgagcaaccaaaacatcacatcagcatttgcatgttcctagcaaggccgaggaaccaatcatgagtttgttctgcgtattgtattcatgcagaacatatgcgccaagcagaacctgaacccggacaggtcgccttcaatctcactcaaaatttgtaaagctagaaggaacaagaaaagggattgcgatgaacaagagttgtagccaatcgttgtacttacaggacagatcggtggaggaagaccttgggggtgcatgtagcgacgcaactgctcgcttgcggcggcaggaaagggaccacttgcgttccggtatttgcacgacgagcgcggccgcaacggcgaattgcctctcgctcgtggcggcaccaggggctccgacctcgccttcgtgtatcggtgtgcgactaaggatgaccgagctgcggtggagtgtacggtgaggcgctggagtggaggaaggctctcgccggcgcaagtggaggatgttggatcggttgagtgtattcaagcgctggcgggggcaggccgcggttggggaagacctcgacttcgtcgggggcagcggtggacttcggcggccaccacggatggggaagaactcggctccagcggcaactggggacgacgtcggctccggggaagaccacggctccggcggtggctggggatgacctaatctccggcgtgggcagcgggggtggcagcggaaggggacgacctcgttgccccgtcgcgaggaggagggaggatgcgcacggagcgaggagacggcggggattcgtgggtgtggaggagaagcgaggaggcgcggggattcgccgggcggcgaggaggagcgaggaggcagcgggggaggagggaggagcgaggaggcgggggcgattttgggggcgaagttgtcgcggcggggaggagcgagggggcggaggaggcggtggggatttgtgcggcgtagtcat
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| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgcccccaaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccccggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgtggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctgcccccgccagcgcttgaatacactcaaccgatccaacatcctccacttgcgccggcgagagccttcctccactccagcgcctcaccatccatcagtgggatttcatcaacgacaaacattgatagtggttctgacaaatattcatgtatagtggttcgatctacatcagctcggcccggtaatgcaggaagctttacgtcaccattgcttgcagtgacaactaaggttcaacagaaccatgagtacaagcagcggaaggatgcatcaatctacaattgccacaggaagatgcctgatgctaatgtcttctcaagcttttggatttctaatagtggaaccctttccttgagggaattccatgaaagatattggtctccagattttaagagtggtagatcctttcgaggctgccacttcaactgcagatcacatgaacttctgtggacccacggcaggagctgtatacacctcattggtgatcatgtaaatgctatttttagatgctggccatga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPQNRPRLLAPPSSPAASSLLLAARRIPAPPRFSSTPTNPRRLLAPCASSLLLATGQRGRPLPLPPPLPTPEIRSSPATAGAVVFPGADVVPSCRWSRVLPHPWWPPKSTAAPDEVEVFPNRGLPPPALEYTQPIQHPPLAPARAFLHSSASPSISGISSTTNIDSGSDKYSCIVVRSTSARPGNAGSFTSPLLAVTTKVQQNHEYKQRKDASIYNCHRKMPDANVFSSFWISNSGTLSLREFHERYWSPDFKSGRSFRGCHFNCRSHELLWTHGRSCIHLIGDHVNAIFRCWP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015230 | OsLima_02g0015230.01 | Chr02 | 13985869 | 13989157 | - | NAM | ||
| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgcccccaaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccccggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgtggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctgcccccgccagcgcttgaatacactcaaccgatccaacatcctccacttgcgccggcgagagccttcctccactccagcgcctcaccatccatcagtgggatttcatcaacgacaaacattgatagtggttctgacaaatattcatgtatagtggttcgatctacatcagctcggcccggtaatgcaggaagctttacgtcaccattgcttgcagtgacaactaaggttcaacagaaccatgagtacaagcagcggaaggatgcatcaatctacaattgccacaggaagatgcctgatgctaatgtcttctcaagcttttggatttctaatagtggaaccctttccttgagggaattccatgaaagatattggtctccagattttaagagtggtagatcctttcgaggctgccacttcaactgcagatcacatgaacttctgtggacccacggcaggagctgtatacacctcattggtgatcatgtaaatgctatttttagatgctggccatga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPQNRPRLLAPPSSPAASSLLLAARRIPAPPRFSSTPTNPRRLLAPCASSLLLATGQRGRPLPLPPPLPTPEIRSSPATAGAVVFPGADVVPSCRWSRVLPHPWWPPKSTAAPDEVEVFPNRGLPPPALEYTQPIQHPPLAPARAFLHSSASPSISGISSTTNIDSGSDKYSCIVVRSTSARPGNAGSFTSPLLAVTTKVQQNHEYKQRKDASIYNCHRKMPDANVFSSFWISNSGTLSLREFHERYWSPDFKSGRSFRGCHFNCRSHELLWTHGRSCIHLIGDHVNAIFRCWP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015230 | OsLima_02g0015230.04 | Chr02 | 13985869 | 13989114 | - | NAM | ||
| CDS seq | atgcacccccaaggtcttcctccaccgatctgtcctgaacatgcaaatgctgatgtgatgttttggttgctcagatccatcagtgggatttcatcaacgacaaacattgatagtggttctgacaaatattcatgtatagtggttcgatctacatcagctcggcccggtaatgcaggaagctttacgtcaccattgcttgcagtgacaagtaaataa
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| Protein seq | MHPQGLPPPICPEHANADVMFWLLRSISGISSTTNIDSGSDKYSCIVVRSTSARPGNAGSFTSPLLAVTSK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015230 | OsLima_02g0015230.03 | Chr02 | 13985869 | 13989114 | - | NAM | ||
| CDS seq | atgcacccccaaggtcttcctccaccgatctgtcctgaacatgcaaatgctgatgtgatgttttggttgctcagatccatcagtgggatttcatcaacgacaaacattgatagtggttctgacaaatattcatgtatagtggttcgatctacatcagctcggcccggtaatgcaggaagctttacgtcaccattgcttgcagtgacaagtaaataa
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| Protein seq | MHPQGLPPPICPEHANADVMFWLLRSISGISSTTNIDSGSDKYSCIVVRSTSARPGNAGSFTSPLLAVTSK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0015230 | OsLima_02g0015230.02 | Chr02 | 13985869 | 13989144 | - | NAM | ||
| CDS seq | atgaggaagatgcctgatgctaatgtcttctcaagcttttggatttctaatagtggaaccctttccttgagggaattccatgaaagatattggtctccagattttaagagtggtagatcctttcgaggctgccacttcaactgcagatcacatgaacttctgtggacccacggcaggagctgtatacacctcattggtgatcatgtaaatgctatttttagatgctggccatga
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| Protein seq | MRKMPDANVFSSFWISNSGTLSLREFHERYWSPDFKSGRSFRGCHFNCRSHELLWTHGRSCIHLIGDHVNAIFRCWP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 13988196 | 13988418 | - | OsLima_02g0015230.03,OsLima_02g0015230.04 | OsLima_02g0015230.02,OsLima_02g0015230.04,OsLima_02g0015230.03 | All |
| SE | Chr02 | 13986476 | 13987623 | - | OsLima_02g0015230.01 | OsLima_02g0015230.04,OsLima_02g0015230.01 | All |
| A5 | Chr02 | 13986718 | 13987719 | - | OsLima_02g0015230.03 | OsLima_02g0015230.02,OsLima_02g0015230.03 | All |
| A5 | Chr02 | 13988196 | 13988634 | - | OsLima_02g0015230.02 | OsLima_02g0015230.02,OsLima_02g0015230.01 | All |
| MX | Chr02 | 13986159 | 13987623 | - | OsLima_02g0015230.04 | OsLima_02g0015230.04,OsLima_02g0015230.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.033047 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0329600 | RBH | 1.733124 | 1.767506 | 1.748244 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g22374 | RBH | 1.950718 | 1.639101 | 0.915595 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0329600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0014970 | RBH | 0.420872 | 3.875707 | 4.034628 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0015160 | RBH | 0.115749 | 2.529946 | 0.797450 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0015050 | RBH | 0.000000 | 0.0 | 2.400282 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0014910 | RBH | 0.000000 | 0.058378 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0014880 | RBH | 1.529559 | 0.895587 | 9.947177 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0014700 | RBH | 0.087502 | 0.312711 | 1.074045 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0228900 | RBH | 1.9133525 | 6.2527675 | 5.673844 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003760 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0014810 | RBH | 0.175451 | 3.988170 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0015320 | RBH | 6.384998 | 11.911242 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0015120 | RBH | 0.316966 | 0.352527 | 0.151954 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0014910 | RBH | 0.341189 | 3.442992 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G015260 | RBH | 0.018743 | 1.105403 | 2.334673 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0014970 | RBH | 2.855313 | 13.623364 | 1.546404 |
