Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_02g0014700 OGI:02037890 | 15/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr02:13693943-13697231
Gene Symbol -
DNA seq

AACTTAACATACTCCTTTAAACAATAAAAAAATGCAAAGCAGCTAACAATACCAAACATATAATTTGTCATAGCTTGATAAACACTTGAAAAGCTCAAAGCAAGATATTTGTATTTATGGTATTGAATTAAACCCCACAGCCTACAATATCTTATCAGGAAAAAAGACTCAGATCTTCACCAACAATACTTCAAATATATCCTTCATGGCCAGCATCTAAAAATAGCATTTACATGATCACCAATGAGGTGTATACAGCTCCTGCCGTGGGTCCACAGAAGTTCATGTGATCTGCAAAACACAAATTTACATCCATTTCACTTGTAAGAAATGGTCATCACATATAATTCCAAGAAGAATATTGTCTATAGTTGCCTTAATTGAAGTAAAAAAGTAGATAGCAAGTGTGAACATTCCAGAAACACTAACATTTGTCAAAACGCCTCTATATTTTCCTTGACCACAATATTAATCTAAAGTGGTCATATTGCTAAACTATGCACACACCTGCAGTTGAAGTGGCAGCCTCGAAAGGATCTACCACTCTTAAAATCTGGAGACCAATATCTTTCATGGAATTCCCTCAAGGAAAGGGTTCCACTATTAGACTGGAAAAAGGGAAACATATCAAATCATGAAAAAGGCATAATCTGAAATTGGAATAGCGTATATCTTTTTAAGATTTAATTTAATCCTGGAGTCCACACTTTTTTCGTGAAGCTACAAATAAATAATATATCCATAATGGTGATGAAAAGGATTTAAAACATGGATAGTAGCACTGGATTAAAAACATGAAAAGCACCTTACAATCCAAAAGCTTGAGAAGACATTAGCATCAGGCATCTTCCTAAGAAACCAAATGCTCTTTTAGCCACATCAAAATTTTCAAGCAAACTACGTATGTCCAAATAAAAAGAAATAACAAACCGTCCAAGCAAGCATATGCCGATGGATAAAATTTATGAATTACATCATTAGTAATTAGAAGTCATCAGCACAAAGCAAATATTCAAACTTCCCAAAAACAATGCAAATTATCAGAGGAGAAACATCAAATTCCATGCTTATAACTTGTAGAATATACACTGGATTCAACTGATGCACTTTTTAAGGAAATGAAGCCATAGTTCCATTGTCCTGAGCTCCAAAATTGATCATTGGTATATACAAAGGGGATATTCACTTATATTTAAGTCTGCTAGAATAAAACTCTCTTGACCTATGGAGTTATATGTGCATACATACAAACTGAAAGAGACGCTTACATTTAAGCTTGAGGACATTTCAACCTGATAGGCTCATGTCAAACCAACCGTTGAAACAATTCCGAAATTAAGTGATTACCAGCTAGAGTGACAGCCAAAAGCAAGCTCAACATTGCAATGGGGAAATTGCGATTAGGGAAATCTTGCCCGTGATTGCAATTTCGGAACAAAATTTTCAAAATTTTGCCCCCCCCCCCCCCACCGGCAAGCATATATCTCACCCGAAATTTCTCCTTTTTTCATGTTTTTGTGAATTTGGTCAAAGTTTATTCTAAATCATTCAAAATTCGTCAATTTTTCAAATAAATTCAGTGATTTTGGTTCTTTCGCCCCCTCCCCCCACGGAAAAAACCCCAATTTCTAGAATGCAAACCCTGAATATTGCAGTAAAACTACAGTGAAATACTTGGTGCACAAATGTCATTACGGGTGGCACCGCTTCAGGTTTTTTTTTTCTTTTGCAAAAATTTGAGAGCATTACATCACCTGTGGCAATTGTAGATTGATGCATCCTTCCGCTGCTTGTACTCATGGTTCTGTTGAACCTTAGCTTGCTACTGCTTACAATTGAGCAAAGCGTACCTCATCCAAGCTTGCTATCTTCTTTAACTCGAGAGCACTTAAATTAGTGGTATTCCCTACGGTGTTTGCCAGTAAATTAGAATTAGTTAACTCAAACAGTACATGATATATAGTGAAGAAATCACAAGCTTAAAAGCTGTTACATACCATCGATCTGTATAAATTAATTTCAGAGATATACAATTAGCAATTAACTGGCAGCGGCATAACAGCTTTGCAAAAGAAGCGAACATGATGTGTATTATTTACTTGTCACTGCAAGCAATGGTGACGTAAAGCTTCCTGCATTACCGGGCCGAGCTGCAAAGGTGAGTCGTGATAAACTTTATTACATTCAGATCACAAATGTTGATTAAAATATTTTTTTTGAGCATTCAATCGATCCAGAGTACTACCTGATGTAGATCGAACCACTATACATGAATATTTGTCAGAACCACTATCAATGTTTGTCGTTGATGAAATCCCACTGATGGATCTGAGCAACCAAAACATCACATCAGCATTTGCATGTTCCTAGCAAGGCCGAGGAACCAATCATGAGTTTGTTCTGCGTATTGTATTCATGCAGAACATATGCGCCAAGCAGAACCTGAACCCGGACAGGTCGCCTTCAATCTCACTCAAAATTTGTAAAGCTAGAAGGAACAAGAAAAGGGATTGCGATGAACAAGAGTTGTAGCCAATCGTTGTACTTACAGGACAGATCGGTGGAGGAAGACCTTGGGGGTGCATGTAGCGACGCAACTGCTCGCTTGCGGCGGCAGGAAAGGGACCACTTGCGTTCCGGTATTTGCACGACGAGCGCGGCCGCAACGGCGAATTGCCTCTCGCTCGTGGCGGCACCAGGGGCTCCGACCTCGCCTTCGTGTATCGGTGTGCGACTAAGGATGACCGAGCTGCGGTGGAGTGTACGGTGAGGCGCTGGAGTGGAGGAAGGCTCTCGCCGGCGCAAGTGGAGGATGTTGGATCGGTTGAGTGTATTCAAGCGCTGGCGGGGGCAGGCCGCGGTTGGGGAAGACCTCGACTTCGTCGGGGGCAGCGGTGGACTTCGGCGGCCACCACGGATGGGGAAGAACTCGGCTCCAGCGGCAACTGGGGACGACGTCGGCTCCGGGGAAGACCACGGCTCCGGCGGTGGCTGGGGATGACCTAATCTCCGGCGTGGGCAGCGGGGGTGGCAGCGGAAGGGGACGACCTCGTTGCCCCGTCGCGAGGAGGAGGGAGGATGCGCACGGAGCGAGGAGACGGCGGGGATTCGTGGGTGTGGAGGAGAAGCGAGGAGGCGCGGGGATTCGCCGGGCGGCGAGGAGGAGCGAGGAGGCAGCGGGGGAGGAGGGAGGAGCGAGGAGGCGGGGGCGATTTTGGGGGCGAAGTTGTCGCGGCGGGGAGGAGCGAGGGGGCGGAGGAGGCGGTGGGGATTTGTGCGGCGTAGTCAT

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CDS seq

ATGACTACGCCGCACAAATCCCCACCGCCTCCTCCGCCCCCTCGCTCCTCCCCGCCGCGACAACTTCGCCCCCAAAATCGCCCCCGCCTCCTCGCTCCTCCCTCCTCCCCCGCTGCCTCCTCGCTCCTCCTCGCCGCCCGGCGAATCCCCGCGCCTCCTCGCTTCTCCTCCACACCCACGAATCCCCGCCGTCTCCTCGCTCCGTGCGCATCCTCCCTCCTCCTCGCGACGGGGCAACGAGGTCGTCCCCTTCCGCTGCCACCCCCGCTGCCCACGCCGGAGATTAGGTCATCCCCAGCCACCGCCGGAGCCGTGGTCTTCCCCGGAGCCGACGTCGTCCCCAGTTGCCGCTGGAGCCGAGTTCTTCCCCATCCGTGGTGGCCGCCGAAGTCCACCGCTGCCCCCGACGAAGTCGAGGTCTTCCCCAACCGCGGCCTGCCCCCGCCAGCGCTTGAATACACTCAACCGATCCAACATCCTCCACTTGCGCCGGCGAGAGCCTTCCTCCACTCCAGCGCCTCACCATCCATCAGTGGGATTTCATCAACGACAAACATTGATAGTGGTTCTGACAAATATTCATGTATAGTGGTTCGATCTACATCAGCTCGGCCCGGTAATGCAGGAAGCTTTACGTCACCATTGCTTGCAGTGACAACTAAGGTTCAACAGAACCATGAGTACAAGCAGCGGAAGGATGCATCAATCTACAATTGCCACAGGAAGATGCCTGATGCTAATGTCTTCTCAAGCTTTTGGATTTCTAATAGTGGAACCCTTTCCTTGAGGGAATTCCATGAAAGATATTGGTCTCCAGATTTTAAGAGTGGTAGATCCTTTCGAGGCTGCCACTTCAACTGCAGATCACATGAACTTCTGTGGACCCACGGCAGGAGCTGTATACACCTCATTGGTGATCATGTAAATGCTATTTTTAGATGCTGGCCATGA

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Protein seq

MTTPHKSPPPPPPPRSSPPRQLRPQNRPRLLAPPSSPAASSLLLAARRIPAPPRFSSTPTNPRRLLAPCASSLLLATGQRGRPLPLPPPLPTPEIRSSPATAGAVVFPGADVVPSCRWSRVLPHPWWPPKSTAAPDEVEVFPNRGLPPPALEYTQPIQHPPLAPARAFLHSSASPSISGISSTTNIDSGSDKYSCIVVRSTSARPGNAGSFTSPLLAVTTKVQQNHEYKQRKDASIYNCHRKMPDANVFSSFWISNSGTLSLREFHERYWSPDFKSGRSFRGCHFNCRSHELLWTHGRSCIHLIGDHVNAIFRCWP

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_02g0014700 OsIR64_02g0014700.03 Chr02 13693943 13697218 - NAM
CDS seq

ATGAGGAAGATGCCTGATGCTAATGTCTTCTCAAGCTTTTGGATTTCTAATAGTGGAACCCTTTCCTTGAGGGAATTCCATGAAAGATATTGGTCTCCAGATTTTAAGAGTGGTAGATCCTTTCGAGGCTGCCACTTCAACTGCAGATCACATGAACTTCTGTGGACCCACGGCAGGAGCTGTATACACCTCATTGGTGATCATGTAAATGCTATTTTTAGATGCTGGCCATGA

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Protein seq

MRKMPDANVFSSFWISNSGTLSLREFHERYWSPDFKSGRSFRGCHFNCRSHELLWTHGRSCIHLIGDHVNAIFRCWP

Gene Transcript Chromosome Start End Strand Source
OsIR64_02g0014700 OsIR64_02g0014700.05 Chr02 13693943 13697188 - NAM
CDS seq

ATGCACCCCCAAGGTCTTCCTCCACCGATCTGTCCTGAACATGCAAATGCTGATGTGATGTTTTGGTTGCTCAGATCCATCAGTGGGATTTCATCAACGACAAACATTGATAGTGGTTCTGACAAATATTCATGTATAGTGGTTCGATCTACATCAGCTCGGCCCGGTAATGCAGGAAGCTTTACGTCACCATTGCTTGCAGTGACAAGTAAATAA

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Protein seq

MHPQGLPPPICPEHANADVMFWLLRSISGISSTTNIDSGSDKYSCIVVRSTSARPGNAGSFTSPLLAVTSK

Gene Transcript Chromosome Start End Strand Source
OsIR64_02g0014700 OsIR64_02g0014700.02 Chr02 13693943 13697231 - NAM
CDS seq

ATGACTACGCCGCACAAATCCCCACCGCCTCCTCCGCCCCCTCGCTCCTCCCCGCCGCGACAACTTCGCCCCCAAAATCGCCCCCGCCTCCTCGCTCCTCCCTCCTCCCCCGCTGCCTCCTCGCTCCTCCTCGCCGCCCGGCGAATCCCCGCGCCTCCTCGCTTCTCCTCCACACCCACGAATCCCCGCCGTCTCCTCGCTCCGTGCGCATCCTCCCTCCTCCTCGCGACGGGGCAACGAGGTCGTCCCCTTCCGCTGCCACCCCCGCTGCCCACGCCGGAGATTAGGTCATCCCCAGCCACCGCCGGAGCCGTGGTCTTCCCCGGAGCCGACGTCGTCCCCAGTTGCCGCTGGAGCCGAGTTCTTCCCCATCCGTGGTGGCCGCCGAAGTCCACCGCTGCCCCCGACGAAGTCGAGGTCTTCCCCAACCGCGGCCTGCCCCCGCCAGCGCTTGAATACACTCAACCGATCCAACATCCTCCACTTGCGCCGGCGAGAGCCTTCCTCCACTCCAGCGCCTCACCATCCATCAGTGGGATTTCATCAACGACAAACATTGATAGTGGTTCTGACAAATATTCATGTATAGTGGTTCGATCTACATCAGCTCGGCCCGGTAATGCAGGAAGCTTTACGTCACCATTGCTTGCAGTGACAACTAAGGTTCAACAGAACCATGAGTACAAGCAGCGGAAGGATGCATCAATCTACAATTGCCACAGGAAGATGCCTGATGCTAATGTCTTCTCAAGCTTTTGGATTTCTAATAGTGGAACCCTTTCCTTGAGGGAATTCCATGAAAGATATTGGTCTCCAGATTTTAAGAGTGGTAGATCCTTTCGAGGCTGCCACTTCAACTGCAGATCACATGAACTTCTGTGGACCCACGGCAGGAGCTGTATACACCTCATTGGTGATCATGTAAATGCTATTTTTAGATGCTGGCCATGA

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Protein seq

MTTPHKSPPPPPPPRSSPPRQLRPQNRPRLLAPPSSPAASSLLLAARRIPAPPRFSSTPTNPRRLLAPCASSLLLATGQRGRPLPLPPPLPTPEIRSSPATAGAVVFPGADVVPSCRWSRVLPHPWWPPKSTAAPDEVEVFPNRGLPPPALEYTQPIQHPPLAPARAFLHSSASPSISGISSTTNIDSGSDKYSCIVVRSTSARPGNAGSFTSPLLAVTTKVQQNHEYKQRKDASIYNCHRKMPDANVFSSFWISNSGTLSLREFHERYWSPDFKSGRSFRGCHFNCRSHELLWTHGRSCIHLIGDHVNAIFRCWP

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Gene Transcript Chromosome Start End Strand Source
OsIR64_02g0014700 OsIR64_02g0014700.01 Chr02 13693943 13697231 - NAM
CDS seq

ATGACTACGCCGCACAAATCCCCACCGCCTCCTCCGCCCCCTCGCTCCTCCCCGCCGCGACAACTTCGCCCCCAAAATCGCCCCCGCCTCCTCGCTCCTCCCTCCTCCCCCGCTGCCTCCTCGCTCCTCCTCGCCGCCCGGCGAATCCCCGCGCCTCCTCGCTTCTCCTCCACACCCACGAATCCCCGCCGTCTCCTCGCTCCGTGCGCATCCTCCCTCCTCCTCGCGACGGGGCAACGAGGTCGTCCCCTTCCGCTGCCACCCCCGCTGCCCACGCCGGAGATTAGGTCATCCCCAGCCACCGCCGGAGCCGTGGTCTTCCCCGGAGCCGACGTCGTCCCCAGTTGCCGCTGGAGCCGAGTTCTTCCCCATCCGTGGTGGCCGCCGAAGTCCACCGCTGCCCCCGACGAAGTCGAGGTCTTCCCCAACCGCGGCCTGCCCCCGCCAGCGCTTGAATACACTCAACCGATCCAACATCCTCCACTTGCGCCGGCGAGAGCCTTCCTCCACTCCAGCGCCTCACCATCCATCAGTGGGATTTCATCAACGACAAACATTGATAGTGGTTCTGACAAATATTCATGTATAGTGGTTCGATCTACATCAGCTCGGCCCGGTAATGCAGGAAGCTTTACGTCACCATTGCTTGCAGTGACAAGTAAATAA

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Protein seq

MTTPHKSPPPPPPPRSSPPRQLRPQNRPRLLAPPSSPAASSLLLAARRIPAPPRFSSTPTNPRRLLAPCASSLLLATGQRGRPLPLPPPLPTPEIRSSPATAGAVVFPGADVVPSCRWSRVLPHPWWPPKSTAAPDEVEVFPNRGLPPPALEYTQPIQHPPLAPARAFLHSSASPSISGISSTTNIDSGSDKYSCIVVRSTSARPGNAGSFTSPLLAVTSK

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Gene Transcript Chromosome Start End Strand Source
OsIR64_02g0014700 OsIR64_02g0014700.04 Chr02 13693943 13697188 - NAM
CDS seq

ATGCACCCCCAAGGTCTTCCTCCACCGATCTGTCCTGAACATGCAAATGCTGATGTGATGTTTTGGTTGCTCAGATCCATCAGTGGGATTTCATCAACGACAAACATTGATAGTGGTTCTGACAAATATTCATGTATAGTGGTTCGATCTACATCAGCTCGGCCCGGTAATGCAGGAAGCTTTACGTCACCATTGCTTGCAGTGACAAGTAAATAA

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Protein seq

MHPQGLPPPICPEHANADVMFWLLRSISGISSTTNIDSGSDKYSCIVVRSTSARPGNAGSFTSPLLAVTSK

OsIR64_02g0014700.05OsIR64_02g0014700.04OsIR64_02g0014700.03OsIR64_02g0014700.02OsIR64_02g0014700.01AS13694000 bp13694500 bp13695000 bp13695500 bp13696000 bp13696500 bp13697000 bp13697500 bpAll AS eventsIsoSeq based ASRoot based ASLeaf based ASPanicle based AS
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr02 13696270 13696492 - OsIR64_02g0014700.04,OsIR64_02g0014700.05 OsIR64_02g0014700.05,OsIR64_02g0014700.03,OsIR64_02g0014700.04 All
SE Chr02 13694550 13695697 - OsIR64_02g0014700.02 OsIR64_02g0014700.05,OsIR64_02g0014700.02,OsIR64_02g0014700.01 All
A5 Chr02 13694792 13695793 - OsIR64_02g0014700.04 OsIR64_02g0014700.03,OsIR64_02g0014700.04 All
A5 Chr02 13696270 13696708 - OsIR64_02g0014700.03 OsIR64_02g0014700.02,OsIR64_02g0014700.03,OsIR64_02g0014700.01 All
MX Chr02 13694233 13695697 - OsIR64_02g0014700.05,OsIR64_02g0014700.01 OsIR64_02g0014700.05,OsIR64_02g0014700.01,OsIR64_02g0014700.04 All

Expression

Leaf Root Panicle
FPKM 0.087502 0.312711 1.074045

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_02g0329600 RBH 1.733124 1.767506 1.748244
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g22374 RBH 1.950718 1.639101 0.915595
Nipponbare | IRGSP 1.0 | RAP-db Os02g0329600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_02g0014970 RBH 0.420872 3.875707 4.034628
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_02g0015160 RBH 0.115749 2.529946 0.797450
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_02g0015050 RBH 0.000000 0.0 2.400282
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_02g0014910 RBH 0.000000 0.058378 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_02g0014880 RBH 1.529559 0.895587 9.947177
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0003940 RBH 0.141529 0.000000 1.516694
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_02G0228900 RBH 1.9133525 6.2527675 5.673844
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_02g0015230 RBH 0.033047 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_02g0014810 RBH 0.175451 3.988170 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_02g0015320 RBH 6.384998 11.911242 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_02g0015120 RBH 0.316966 0.352527 0.151954
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_02g0014910 RBH 0.341189 3.442992 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_02G015260 RBH 0.018743 1.105403 2.334673
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_02g0014970 RBH 2.855313 13.623364 1.546404
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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