Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_04g0003760 | OGI:04020690 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr04:6796745-6800065 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctgcccccgccagcgcttgaatacactcaaccgatccaacatcctccacttgcgccggcgagagccttcctccactccagcgcctcaccgtacactccaccgtagctcggtcatccttagtcgcacaccgatacacgaaggcgaggtcggagcccctggtgctgccacgagcgagaggcaattcgccgttgcggccgcgctcgtcgcgcaaataccggaacgcaagtggtccctttcctaccgccgcaagcgaggagttgcgtcgctacatgcacccccaaggtcttcctccaccgatctgtcctgtaactacaacgattggctacaactcttgttcatcgcaatcccttttcttgttccttctagctttacaaattttgagggagattgaaggcgacctgtccgggttcaggttctgcttggcgcatatgttctgcatgaatacaatacgcagaacaaactcatgattggttcctcggccttgctaggaacatgcaaatgctgatgtgatgttttggttgctcagatccatcagtgggatttcatcaacgacaaacattgatagtggttctgacaaatattcatgtatagtggttcgatctacattaggtagtactctggatcaattgaatgctcaaaaaaatattttaatcaacatttgtgatctgaatgtaataaagtttatcacgactcacctttgcagctcggcccggtaatgcaggaagctttacatcaccatcgcttgcagtgacaagtaaataatacacatcatgttcgcttcttttgcaaagctattatgccgctgccagttaattgctaattgtatatctctgaaattaatttatacagatcgatggtatgtaacagcttttaagcttgtgatttcttcactatatatcatgtactgtttgagttaactaattctaatttactggcaaacaccgtagggaataccactaatttaagtgctctcgagttaaagaagatagcaagctcggatgaggtacgctttgctcaattgtaagcagtagcaagctaaggttcaacagaaccatgagtacaagcagcggaaggatgcatcaatctacaactgccacaggtgatgtaatgctctcaaattttttgcaaaagAaaaaaaaaaacctgaagcggtgccacccgtaatgacatttgtgcaccaagtatttcactgcagttttactgcaatattcagggtttgcattctagaaattggggttttttccgtggggggagggggcgaaagaaccaaaatcactgaatttatttgaaaaattgatgaattttgaatgatttagaataagctttgaccaaattcacaaaaacatgaaaaaaggagaaatttcgggtgagatatatgcttgccggtggagagggggcaaaattttgaaaattttgttccgaaattgcaatcacgggcaagatttccctaatcgcaatttccccattgcaatgttgagcttgcttttagctgtcactctagctggtaatcacttaatttcggatttgtttcaacggttggtttgacatgaacctatcaggttgaaatgtcctcaagcttaaatgtaagcgtctctttcagtttgtatgtatgcacatataactccataggtcaagagagttttattctagcagacttaaatataagtgaatatcccctttgtatataccaatgatcaattttggagctcaggacaatggaactatggcttcatttccttaaaaagtgcatcagttgaatccagtgtatgttctacaagttataagcatggattttgatgtttctcctctgataatttgcattgtttttgggaagtttgaatatttgctttgtgctgatgacttctaattactaatgatgtaattcataaattttatccatcagcatatgcttgcttggacggtttgttatttctttttatttggacatacgtagtttgcttgaaaaatttgatgtggctaaaagagcatttggtttcttaggaagatgcctgatgctaatgtcttctcaagcttttggattgtaaggtgcttttcatgtttttaatccagtgctactatccatgttttaaatccttttcatcaccattgtggatatattatttatttgtagcttcacgaaaaaagtgtggactccaggattaaattaaatcttaaaaagatatacgctattccaatttcagattatgccttttcaatgatttgatatgtttcccTttttccagtctaatagtggaaccctttccttgtgggaattccatgaaagatattggtctccagattttaagattggtagatcctttcgtggctgccacttcaactgcaggtgtgtgcatagtttagcaatatgaccactttagattaatattgtggtcaaggaaaatatagaggcgttttgacaaatgttagtgtttctggaatgttcacacttgctatctacttttttacttcaattaaggcaactatagacaatattctttttgaaattatatgtgatgaccatttcttacaagtgaaatggatgtaaatttgtgttttgtagatcacgtgaacttctgtggactcacggcaggagctgtatacacctcattggtgatcatgtaaatgctatttttagttgctggccatgagggatatatttgaagtattgttggtgaagatctgagttttttttcctgataagatattgtaggctgtggggtttaattcaataccataaatacaaatatcttgctttgagcttttcaagtgtttatcaagctatgacaaattatatgtttggtattgttagctgctttgcatttttttattgtttaaaggagtatgttaagttacattatagtacatatagttcttaaactttttagtatg
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| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctgcccccgccagcgcttgaatacactcaaccgatccaacatcctccacttgcgccggcgagagccttcctccactccagcgcctcaccatccatcagtgggatttcatcaacgacaaacattgatagtggttctgacaaatattcatgtatagtggttcgatctacattagctcggcccggtaatgcaggaagctttacatcaccatcgcttgcagtgacaactaaggttcaacagaaccatgagtacaagcagcggaaggatgcatcaatctacaactgccacaggaagatgcctgatgctaatgtcttctcaagcttttggatttctaatagtggaaccctttccttgtgggaattccatgaaagatattggtctccagattttaagattggtagatcctttcgtggctgccacttcaactgcagatcacgtgaacttctgtggactcacggcaggagctgtatacacctcattggtgatcatgtaaatgctatttttagttgctggccatga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRLLAPPSSPAASSLLLAARRIPAPPRFSSTPTNPRRLLAPCASSLLATGQRGRPLPLPPPLPTPEIRSSPATAGAVVFPGADVVPSCRWSRVLPHPRWPPKSTAAPDEVEVFPNRGLPPPALEYTQPIQHPPLAPARAFLHSSASPSISGISSTTNIDSGSDKYSCIVVRSTLARPGNAGSFTSPSLAVTTKVQQNHEYKQRKDASIYNCHRKMPDANVFSSFWISNSGTLSLWEFHERYWSPDFKIGRSFRGCHFNCRSRELLWTHGRSCIHLIGDHVNAIFSCWP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0003760 | OsLima_04g0003760.02 | Chr04 | 6796745 | 6800027 | + | NAM | ||
| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggaacatgcaaatgctgatgtgatgttttggttgctcagatccatcagtgggatttcatcaacgacaaacattgatagtggttctgacaaatattcatgtatagtggttcgatctacattagctcggcccggtaatgcaggaagctttacatcaccatcgcttgcagtgacaagtaaataa
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRLLAPPSSPAASSLLLAARRIPAPPRFSSTPTNPRRLLAPCASSLLATGQRGRPLPLPPPLPTPEIRSSPATAGAVVFPGADVVPSCRWSRVLPHPRWPPKSTAAPDEVEEHANADVMFWLLRSISGISSTTNIDSGSDKYSCIVVRSTLARPGNAGSFTSPSLAVTSK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0003760 | OsLima_04g0003760.04 | Chr04 | 6799071 | 6800065 | + | NAM | ||
| CDS seq | atgtttcccTttttccagtctaatagtggaaccctttccttgtgggaattccatgaaagatattggtctccagattttaagattggtagatcctttcgtggctgccacttcaactgcagatcacgtgaacttctgtggactcacggcaggagctgtatacacctcattggtgatcatgtaaatgctatttttagttgctggccatga
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| Protein seq | MFPFFQSNSGTLSLWEFHERYWSPDFKIGRSFRGCHFNCRSRELLWTHGRSCIHLIGDHVNAIFSCWP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0003760 | OsLima_04g0003760.01 | Chr04 | 6796745 | 6800065 | + | NAM | ||
| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggaacatgcaaatgctgatgtgatgttttggttgctcagatccatcagtgggatttcatcaacgacaaacattgatagtggttctgacaaatattcatgtatagtggttcgatctacattagctcggcccggtaatgcaggaagctttacatcaccatcgcttgcagtgacaagtaaataa
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRLLAPPSSPAASSLLLAARRIPAPPRFSSTPTNPRRLLAPCASSLLATGQRGRPLPLPPPLPTPEIRSSPATAGAVVFPGADVVPSCRWSRVLPHPRWPPKSTAAPDEVEEHANADVMFWLLRSISGISSTTNIDSGSDKYSCIVVRSTLARPGNAGSFTSPSLAVTSK |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_04g0003760 | OsLima_04g0003760.03 | Chr04 | 6796745 | 6800027 | + | NAM | ||
| CDS seq | atgactacgccgcacaaatccccaccgcctcctccgccccctcgctcctccccgccgcgacaacttcgccccccaaatcgcccccgcctcctcgctcctccctcctcccccgctgcctcctcgctcctcctcgccgcccggcgaatccccgcgcctcctcgcttctcctccacacccacgaatccccgccgtctcctcgctccgtgcgcatcctccctcctcgcgacggggcaacgaggtcgtccccttccgctgccacccccgctgcccacgccggagattaggtcatccccagccaccgccggagccgtggtcttccctggagccgacgtcgtccccagttgccgctggagccgagttcttccccatccgcggtggccgccgaagtccaccgctgcccccgacgaagtcgaggtcttccccaaccgcggcctgcccccgccagcgcttgaatacactcaaccgatccaacatcctccacttgcgccggcgagagccttcctccactccagcgcctcaccatccatcagtgggatttcatcaacgacaaacattgatagtggttctgacaaatattcatgtatagtggttcgatctacattagctcggcccggtaatgcaggaagctttacatcaccatcgcttgcagtgacaactaaggttcaacagaaccatgagtacaagcagcggaaggatgcatcaatctacaactgccacaggaagatgcctgatgctaatgtcttctcaagcttttggatttctaatagtggaaccctttccttgtgggaattccatgaaagatattggtctccagattttaagattggtagatcctttcgtggctgccacttcaactgcagatcacgtgaacttctgtggactcacggcaggagctgtatacacctcattggtgatcatgtaaatgctatttttagttgctggccatga
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| Protein seq | MTTPHKSPPPPPPPRSSPPRQLRPPNRPRLLAPPSSPAASSLLLAARRIPAPPRFSSTPTNPRRLLAPCASSLLATGQRGRPLPLPPPLPTPEIRSSPATAGAVVFPGADVVPSCRWSRVLPHPRWPPKSTAAPDEVEVFPNRGLPPPALEYTQPIQHPPLAPARAFLHSSASPSISGISSTTNIDSGSDKYSCIVVRSTLARPGNAGSFTSPSLAVTTKVQQNHEYKQRKDASIYNCHRKMPDANVFSSFWISNSGTLSLWEFHERYWSPDFKIGRSFRGCHFNCRSRELLWTHGRSCIHLIGDHVNAIFSCWP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr04 | 6798275 | 6799420 | + | OsLima_04g0003760.03 | OsLima_04g0003760.01,OsLima_04g0003760.03 | All |
| A5 | Chr04 | 6799222 | 6799737 | + | OsLima_04g0003760.04 | OsLima_04g0003760.04,OsLima_04g0003760.02 | All |
| MX | Chr04 | 6798275 | 6799737 | + | OsLima_04g0003760.02 | OsLima_04g0003760.01,OsLima_04g0003760.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0194800 | RBH | 1.464403 | 1.447274 | 1.206512 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g22374 | SBH | 1.950718 | 1.639101 | 0.915595 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0194800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004310 | RBH | 0.220672 | 0.684101 | 1.674781 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003940 | RBH | 0.279674 | 0.069297 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003810 | RBH | 0.832741 | 5.294008 | 7.245941 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0095200 | SBH | 0.9298215 | 4.078635 | 2.1897635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003940 | RBH | 0.141529 | 0.000000 | 1.516694 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0098900 | SBH | 0.7842595 | 2.811332 | 3.099913 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0015230 | RBH | 0.033047 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004010 | RBH | 0.470000 | 1.428711 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003800 | RBH | 0.000000 | 5.051398 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0015120 | SBH | 0.316966 | 0.352527 | 0.151954 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003870 | RBH | 0.272978 | 1.447755 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004050 | RBH | 0.000000 | 0.000000 | 0.309005 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003810 | RBH | 0.000000 | 0.0 | 5.567215 |
