Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0008380 | OGI:02017350 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:6153449-6154927 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctattccactccagtttgcgtgaacctcgcaatgagccgcataacgttctcatacgaggagcctcctttcgccatggcccttcgagcttgctcaccgtactccttggccttcctcctcctctccttggcctcctcgccgccgccgtccatcagcaccgacaccacccgcgcgacgtcaccccgatcaactgtcaaggactcctcgttcaacatgctcaccggcgccgtcacgccgatcggcacgccgacgccgagcacgtccacggcgagctgctcgttcaggaactggtcggcgaagtgtggccacgtcgccacgggcacgccacgggcgatggcctccagcagcgagttccacccgcagtgcgtgaggaagccaccgacggcgcggtgcgacaggatggtcacctgcggcgcccacccgcgcaccacgaggccgcgcgtcgcggttcgcgccatgaactcgtccagccattcctgcacctccggcctcgacgaaactaattcggactccttcaccacccagaggaacggcttgccggagtcctcgaggccatggccgacctcgaacaggtgcttcggaagccttcgcaggacgctgccgaagccgacgtagacgacggagccggtggcctgcttgtcgagccacacggtgatcgcgcgctggtccgtgctagccatggcctcgtcgtcccggttgtgcaagcagagcgggccaagcgtccacaccggcttgccgagcgccgcctcgtagcacgccacgaactgagcctcgaggtccaggaaggtgttcaccaccacgccgtcggcggcgagcatcgcctcgatggcctcgtcacggagcgcttcacaacccggagcgttgtagaaaccggggaccgtgcccttcgtcaccgtcacacgtaccggcatcccgggcacgacgtaggtctcctgttcgtcgtcggcatcggcggcggcggctatctgctcgtgcaggccgtgcacgacggcgttgaggtcgcagagcgagtagaagcacgacggcccgtggaagaagagccgcggaatgccgaggctccgggcgactccggcggcccacgtgttgcaccagtcggagatgatgcagctcgggcgccgctccagagcgcgcacgtaggcctcgaagggcgcgtcgagggcgcgcatggctttgacaaagggcgtgaactgctcgttctccgagagcttgtcggcgctctggtagtccggcggcaggccggccacggccggcgagaacgggagctccacgatctcgaggggcagcttctcgcgcgcggccttgccggcgacgccgcgcagccacgtggcgttcagcggcgtcgtgacgaggctggcgcgtgcgccatgcgcggcgaggaggcccgcgagatcgaccatggggatgaggtgaccgtgcgccgcgagaggggcgaggacgaagtgcggctgcgccggcgcctgtgctgtggactcagctgccat
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| CDS seq | atggcagctgagtccacagcacaggcgccggcgcagccgcacttcgtcctcgcccctctcgcggcgcacggtcacctcatccccatggtcgatctcgcgggcctcctcgccgcgcatggcgcacgcgccagcctcgtcacgacgccgctgaacgccacgtggctgcgcggcgtcgccggcaaggccgcgcgcgagaagctgcccctcgagatcgtggagctcccgttctcgccggccgtggccggcctgccgccggactaccagagcgccgacaagctctcggagaacgagcagttcacgccctttgtcaaagccatgcgcgccctcgacgcgcccttcgaggcctacgtgcgcgctctggagcggcgcccgagctgcatcatctccgactggtgcaacacgtgggccgccggagtcgcccggagcctcggcattccgcggctcttcttccacgggccgtcgtgcttctactcgctctgcgacctcaacgccgtcgtgcacggcctgcacgagcagatagccgccgccgccgatgccgacgacgaacaggagacctacgtcgtgcccgggatgccggtacgtgtgacggtgacgaagggcacggtccccggtttctacaacgctccgggttgtgaagcgctccgtgacgaggccatcgaggcgatgctcgccgccgacggcgtggtggtgaacaccttcctggacctcgaggctcagttcgtggcgtgctacgaggcggcgctcggcaagccggtgtggacgcttggcccgctctgcttgcacaaccgggacgacgaggccatggctagcacggaccagcgcgcgatcaccgtgtggctcgacaagcaggccaccggctccgtcgtctacgtcggcttcggcagcgtcctgcgaaggcttccgaagcacctgttcgaggtcggccatggcctcgaggactccggcaagccgttcctctgggtggtgaaggagtccgaattagtttcgtcgaggccggaggtgcaggaatggctggacgagttcatggcgcgaaccgcgacgcgcggcctcgtggtgcgcgggtgggcgccgcaggtgaccatcctgtcgcaccgcgccgtcggtggcttcctcacgcactgcgggtggaactcgctgctggaggccatcgcccgtggcgtgcccgtggcgacgtggccacacttcgccgaccagttcctgaacgagcagctcgccgtggacgtgctcggcgtcggcgtgccgatcggcgtgacggcgccggtgagcatgttgaacgaggagtccttgacagttgatcggggtgacgtcgcgcgggtggtgtcggtgctgatggacggcggcggcgaggaggccaaggagaggaggaggaaggccaaggagtacggtgagcaagctcgaagggccatggcgaaaggaggctcctcgtatgagaacgttatgcggctcattgcgaggttcacgcaaactggagtggaatag
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| Protein seq | MAAESTAQAPAQPHFVLAPLAAHGHLIPMVDLAGLLAAHGARASLVTTPLNATWLRGVAGKAAREKLPLEIVELPFSPAVAGLPPDYQSADKLSENEQFTPFVKAMRALDAPFEAYVRALERRPSCIISDWCNTWAAGVARSLGIPRLFFHGPSCFYSLCDLNAVVHGLHEQIAAAADADDEQETYVVPGMPVRVTVTKGTVPGFYNAPGCEALRDEAIEAMLAADGVVVNTFLDLEAQFVACYEAALGKPVWTLGPLCLHNRDDEAMASTDQRAITVWLDKQATGSVVYVGFGSVLRRLPKHLFEVGHGLEDSGKPFLWVVKESELVSSRPEVQEWLDEFMARTATRGLVVRGWAPQVTILSHRAVGGFLTHCGWNSLLEAIARGVPVATWPHFADQFLNEQLAVDVLGVGVPIGVTAPVSMLNEESLTVDRGDVARVVSVLMDGGGEEAKERRRKAKEYGEQARRAMAKGGSSYENVMRLIARFTQTGVE |
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| Function | UDP-glycosyltransferase 73C3 [UniProtKB/Swiss-Prot:Q9ZQ96] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0008380 | OsLima_02g0008380.01 | Chr02 | 6153449 | 6154927 | - | NAM | ||
| CDS seq | atggcagctgagtccacagcacaggcgccggcgcagccgcacttcgtcctcgcccctctcgcggcgcacggtcacctcatccccatggtcgatctcgcgggcctcctcgccgcgcatggcgcacgcgccagcctcgtcacgacgccgctgaacgccacgtggctgcgcggcgtcgccggcaaggccgcgcgcgagaagctgcccctcgagatcgtggagctcccgttctcgccggccgtggccggcctgccgccggactaccagagcgccgacaagctctcggagaacgagcagttcacgccctttgtcaaagccatgcgcgccctcgacgcgcccttcgaggcctacgtgcgcgctctggagcggcgcccgagctgcatcatctccgactggtgcaacacgtgggccgccggagtcgcccggagcctcggcattccgcggctcttcttccacgggccgtcgtgcttctactcgctctgcgacctcaacgccgtcgtgcacggcctgcacgagcagatagccgccgccgccgatgccgacgacgaacaggagacctacgtcgtgcccgggatgccggtacgtgtgacggtgacgaagggcacggtccccggtttctacaacgctccgggttgtgaagcgctccgtgacgaggccatcgaggcgatgctcgccgccgacggcgtggtggtgaacaccttcctggacctcgaggctcagttcgtggcgtgctacgaggcggcgctcggcaagccggtgtggacgcttggcccgctctgcttgcacaaccgggacgacgaggccatggctagcacggaccagcgcgcgatcaccgtgtggctcgacaagcaggccaccggctccgtcgtctacgtcggcttcggcagcgtcctgcgaaggcttccgaagcacctgttcgaggtcggccatggcctcgaggactccggcaagccgttcctctgggtggtgaaggagtccgaattagtttcgtcgaggccggaggtgcaggaatggctggacgagttcatggcgcgaaccgcgacgcgcggcctcgtggtgcgcgggtgggcgccgcaggtgaccatcctgtcgcaccgcgccgtcggtggcttcctcacgcactgcgggtggaactcgctgctggaggccatcgcccgtggcgtgcccgtggcgacgtggccacacttcgccgaccagttcctgaacgagcagctcgccgtggacgtgctcggcgtcggcgtgccgatcggcgtgacggcgccggtgagcatgttgaacgaggagtccttgacagttgatcggggtgacgtcgcgcgggtggtgtcggtgctgatggacggcggcggcgaggaggccaaggagaggaggaggaaggccaaggagtacggtgagcaagctcgaagggccatggcgaaaggaggctcctcgtatgagaacgttatgcggctcattgcgaggttcacgcaaactggagtggaatag
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| Protein seq | MAAESTAQAPAQPHFVLAPLAAHGHLIPMVDLAGLLAAHGARASLVTTPLNATWLRGVAGKAAREKLPLEIVELPFSPAVAGLPPDYQSADKLSENEQFTPFVKAMRALDAPFEAYVRALERRPSCIISDWCNTWAAGVARSLGIPRLFFHGPSCFYSLCDLNAVVHGLHEQIAAAADADDEQETYVVPGMPVRVTVTKGTVPGFYNAPGCEALRDEAIEAMLAADGVVVNTFLDLEAQFVACYEAALGKPVWTLGPLCLHNRDDEAMASTDQRAITVWLDKQATGSVVYVGFGSVLRRLPKHLFEVGHGLEDSGKPFLWVVKESELVSSRPEVQEWLDEFMARTATRGLVVRGWAPQVTILSHRAVGGFLTHCGWNSLLEAIARGVPVATWPHFADQFLNEQLAVDVLGVGVPIGVTAPVSMLNEESLTVDRGDVARVVSVLMDGGGEEAKERRRKAKEYGEQARRAMAKGGSSYENVMRLIARFTQTGVE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.594729 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0206100 | SBH | 8.413288 | 9.778836 | 2.761018 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g11110 | SBH | 5.453034 | 6.316109 | 0.689554 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0206100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0008110 | SBH | 2.813559 | 1.667177 | 0.444955 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0008220 | SBH | 1.912999 | 0.0 | 0.128117 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0008020 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0007960 | SBH | 0.708180 | 0.039964 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0008020 | SBH | 19.333998 | 0.0 | 0.461660 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0099700 | SBH | 32.9649105 | 1.811711 | 0.1593475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0007950 | SBH | 0.096658 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0103500 | SBH | 3.9729895 | 0.2453455 | 0.0063505 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0008400 | RBH | 1.275004 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0007980 | SBH | 2.382852 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0008270 | SBH | 23.129961 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0008260 | SBH | 1.610988 | 0.0 | 0.128080 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0008030 | SBH | 0.461889 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G008130 | SBH | 1.028090 | 0.560092 | 0.197401 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0008150 | SBH | 3.330182 | 0.0 | 1.485300 |
