Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0045890 | OGI:01121600 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:43393144-43396523 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aagaaaaaaatttggaacttttattcatgtagcattgtcaaaaaaaaagggccatacagagtacatgcattaacgttcaaccaacattatttaaccatggattattcgtctctggaaatccttatttgcaccggcatggcatgctcagctgctagttcggaggaaacgtaatcgggtagaccggcgtcttgtcagggtggaagagcccaaaatgcctctccgtctcatccccgggcttctggttctcgttgaacatggcgaacacgtacgtctcgatcaccccgggccgcttcggcgtcccgttcttgacgttgtcgatcacgccctggttgtgattcctcgcgttctccacgttcgccgcgaaccctcccgccgacggccacccgctctccgacacgacgacgcggacgccgggcgcgccggccttttccagcgcggcgtacacggcgtccaccatggcgctgaagaggttggtgtaggtgaggccgctgtcgttgtccctcaccgtggtgcccggctggaacgtggcgtagttgagcgggatgtcccgcgggttgtccctgtaggcgaagtaggggtacacgttggcgagcagcggcgacatggtgttggcgaggaactgcgcgatgggcaccatgaactgctgcaggtccgggcggaacacgccgtgcgacggaggggacgaggcggtgatcacgtccatcctcaccgccgtcgacaccttgatgctgttcgagaggccggccgacacgagcgcgtcgtacacgttctgcatggccgggaggatggtccccatgtcgccggggccgagctcgttgccgacggcgatgtaccggatgatgacgttcggccagtaggcctggacgttgtcacgcacccagtcggcggcggcggaggggttgttggcgaggttggccaccgcgccgctgccgccgacgtcgatgatgacggtgacgccgctgccgcgaagcgcgtcgagggcctgctggtccgggctgtagatgcgcatagcaccgataccattggacttgtacagctgcacgacctcgctctgcgacgggaggttgtcgccgttcatgccgtagcaaacaccgtggacacctgcaaaaacataggagtgcatgtttatgccaaatcagacgatttaattgatgtgtaagaaaataaaatatatatatatagagagagagagatcgaatctggatttttcacattttgatccttttgaaaaaattatttcgcaaatagacccctaaaaaacattatcctataaatggtcctttttggggcgccagagtggctggcgccgtcatccaacgggacggcgccagcctctctggcactgtcctcctgccaccgtggcgtacgcgaaccgacgtggcaggaggagggcgccagccatgctggcgccgccccagggaggagggcgccagccgcctccattcctgtttctttgtatggagttgcaacggtgttatttttattttattttttcggatgttttttcacactcaggatcacgatacaactgtaacgtcccgccttcccccaggccgggcccgcttacatctgatagctttcataggtcatagactgccctcacagaccaacacatgtcttttctgcacccgccttcccccaggccgcttacatctgatagctttcataggtcatagactgccctcacagaccaacacatgtcttttctgcacccgccttcccccaggccgggcccgcttacatctgatagctttcataggtcatagactgccctcacagaccaacacatgtcttttctgcacccgccttcacccaggccgggcccgcttacatctgatagctttcataggtcatagactgccctcacagaccaacacatgtcttttctgcacactttgtcctcactcgtgtgcacccaggaagaatttctcggtcggtcacccatcccaaattgctccaggccaagcacgcttaaccctggagttctttggagattggcttccggaaaaaaagttgcaacttgttgatatgagtattctattaatcctattaagccctaggccggaatgttacaacaaccaaccacAaaaaaaatttaaactcgaactaccacttagctaagtctgaaaatatctagcataccacttagtctactttgcaccttcactaaaattagaccataactcctttagtaaaaccctttgatcagcatgttaaacataatgcactctaccactatatgaaattacttaatctaattcaaaatataaccacatgaaatgatatatataagttaaacagtatatagagatgcaatttttttatttttatttcatttttttgatatttttttcacacttaggagaacataggaaccaaccgtataaaaaataaactcaaacggacaaaatatgtgacatgtagaattttccaaaattctaccgaaacggacaaaatatgccatctattaaaataggcgtaactttctcatacggactcggaatcaggcaaataatatatacacggacatctacagaaaaagttacatccgattctccaccgctttgccgggttcgaagatattaaaacctccaaattccgcttgcaagattgtgttttcgaggagagaagtttttcggtggagctttggaaaattccacatgccacatatttcgtccgtttgagtttattttttacgtggttggttcctgtgagttcctaagtgtgaaaaaaatatcaataaaataaaataaaaataaaaaagttgcacatctttctcctctgcattagttcggagagaggagaggagaggaaaaattctacatgtcacatattacgtccatttgagttcaatttttctatggttggttcttgtgtgtccttaagcgtgaaaaaaaatatcaaacaaataaaacaaaaataaaaaatttcgggggggggggggggggcgccagccactctggcgcactccccctagccaccttagcatcgccccgctacgttggcggtgggacggcgccaaagaggctggcgccgtcctgttgaacgacggcgccagccactctagcgccccaaaaaggaccattttcgggataaatttttctagagatctacttgcgaaataagtttttcaaaaggaccaaaatgtgaaaaatccaggagatcgaattgcatatgagaggcagagagggttagttaattaattgattagcaatagatcagctcagcatgaaagagaaaaggaagggaaaaataagttctgaatatacctcccatttgatcaaatagctatgataactcgagctctgatctgcttgatcagtatctggagatggaattatgaatggcgcctcgatgctcgcgctcgctagctcgtgatc
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| CDS seq | atgggaggtgtccacggtgtttgctacggcatgaacggcgacaacctcccgtcgcagagcgaggtcgtgcagctgtacaagtccaatggtatcggtgctatgcgcatctacagcccggaccagcaggccctcgacgcgcttcgcggcagcggcgtcaccgtcatcatcgacgtcggcggcagcggcgcggtggccaacctcgccaacaacccctccgccgccgccgactgggtgcgtgacaacgtccaggcctactggccgaacgtcatcatccggtacatcgccgtcggcaacgagctcggccccggcgacatggggaccatcctcccggccatgcagaacgtgtacgacgcgctcgtgtcggccggcctctcgaacagcatcaaggtgtcgacggcggtgaggatggacgtgatcaccgcctcgtcccctccgtcgcacggcgtgttccgcccggacctgcagcagttcatggtgcccatcgcgcagttcctcgccaacaccatgtcgccgctgctcgccaacgtgtacccctacttcgcctacagggacaacccgcgggacatcccgctcaactacgccacgttccagccgggcaccacggtgagggacaacgacagcggcctcacctacaccaacctcttcagcgccatggtggacgccgtgtacgccgcgctggaaaaggccggcgcgcccggcgtccgcgtcgtcgtgtcggagagcgggtggccgtcggcgggagggttcgcggcgaacgtggagaacgcgaggaatcacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccggggtgatcgagacgtacgtgttcgccatgttcaacgagaaccagaagcccggggatgagacggagaggcattttgggctcttccaccctgacaagacgccggtctacccgattacgtttcctccgaactag
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| Protein seq | MGGVHGVCYGMNGDNLPSQSEVVQLYKSNGIGAMRIYSPDQQALDALRGSGVTVIIDVGGSGAVANLANNPSAAADWVRDNVQAYWPNVIIRYIAVGNELGPGDMGTILPAMQNVYDALVSAGLSNSIKVSTAVRMDVITASSPPSHGVFRPDLQQFMVPIAQFLANTMSPLLANVYPYFAYRDNPRDIPLNYATFQPGTTVRDNDSGLTYTNLFSAMVDAVYAALEKAGAPGVRVVVSESGWPSAGGFAANVENARNHNQGVIDNVKNGTPKRPGVIETYVFAMFNENQKPGDETERHFGLFHPDKTPVYPITFPPN |
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| Function | Glucan endo-1,3-beta-glucosidase GV [UniProtKB/Swiss-Prot:Q02438] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0045890 | OsLima_01g0045890.01 | Chr01 | 43393144 | 43396523 | - | NAM | ||
| CDS seq | atgggaggtgtccacggtgtttgctacggcatgaacggcgacaacctcccgtcgcagagcgaggtcgtgcagctgtacaagtccaatggtatcggtgctatgcgcatctacagcccggaccagcaggccctcgacgcgcttcgcggcagcggcgtcaccgtcatcatcgacgtcggcggcagcggcgcggtggccaacctcgccaacaacccctccgccgccgccgactgggtgcgtgacaacgtccaggcctactggccgaacgtcatcatccggtacatcgccgtcggcaacgagctcggccccggcgacatggggaccatcctcccggccatgcagaacgtgtacgacgcgctcgtgtcggccggcctctcgaacagcatcaaggtgtcgacggcggtgaggatggacgtgatcaccgcctcgtcccctccgtcgcacggcgtgttccgcccggacctgcagcagttcatggtgcccatcgcgcagttcctcgccaacaccatgtcgccgctgctcgccaacgtgtacccctacttcgcctacagggacaacccgcgggacatcccgctcaactacgccacgttccagccgggcaccacggtgagggacaacgacagcggcctcacctacaccaacctcttcagcgccatggtggacgccgtgtacgccgcgctggaaaaggccggcgcgcccggcgtccgcgtcgtcgtgtcggagagcgggtggccgtcggcgggagggttcgcggcgaacgtggagaacgcgaggaatcacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccggggtgatcgagacgtacgtgttcgccatgttcaacgagaaccagaagcccggggatgagacggagaggcattttgggctcttccaccctgacaagacgccggtctacccgattacgtttcctccgaactag
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| Protein seq | MGGVHGVCYGMNGDNLPSQSEVVQLYKSNGIGAMRIYSPDQQALDALRGSGVTVIIDVGGSGAVANLANNPSAAADWVRDNVQAYWPNVIIRYIAVGNELGPGDMGTILPAMQNVYDALVSAGLSNSIKVSTAVRMDVITASSPPSHGVFRPDLQQFMVPIAQFLANTMSPLLANVYPYFAYRDNPRDIPLNYATFQPGTTVRDNDSGLTYTNLFSAMVDAVYAALEKAGAPGVRVVVSESGWPSAGGFAANVENARNHNQGVIDNVKNGTPKRPGVIETYVFAMFNENQKPGDETERHFGLFHPDKTPVYPITFPPN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0947000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71860 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0947000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046920 | SBH | 0.0 | 3.636589 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046400 | SBH | 0.0 | 1.925657 | 0.094912 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046880 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046340 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045860 | SBH | 0.0 | 9.583062 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0682900 | SBH | 0.005809 | 2.26332 | 0.078068 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045340 | RBH | 0.0 | 0.941998 | 0.110385 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0685300 | SBH | 0.007202 | 2.2509055 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045950 | SBH | 0.0 | 0.375513 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045790 | RBH | 0.0 | 8.365504 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046110 | RBH | 0.0 | 23.287109 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0046080 | SBH | 0.0 | 0.357376 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045850 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046140 | SBH | 0.0 | 1.234526 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045950 | SBH | 0.0 | 3.656847 | 0.0 |
