Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0045950 | OGI:01121600 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:43414523-43417019 | ||||||||
| Gene Symbol | OsPR2, OsGLN1 | ||||||||||
| DNA seq | atcgacgatcaggagcgagcattgaagcatacgtatatccatctccagaaactcgatcaagcatactagctgagacagatcgagtcacctagctatttgagcaaatgggaggtatatattttagattattcattattttccttccttttttcaagcagttaattctctattttcgttgatttgatcgatcgatcgatcgatcgtaatacggttgagtggtgccgtggtgatgatgcagctgtcaatggtgtttgctacggtgttcttggcgacaacctcccgtcgcggagcgaggtcgtgcagctgctcaagtcccaaggcatcggcgcgatgcgcatctactacccggacaaggaggccctcgacgcgctccgcggcagcggcatcgccgtcatcgtcgacgtcggcgacagcggcgcggtggccaacctcgccaacaacccctccgccgccgccgactgggtccgggacaacgtcgaggcctactggccgagcgtcatcatccgctacatcaccgtcggcaacgagctccccgccggcgacatgggcctcatcctcccggccatgcagaacgtgcacaaggccctcgtgtccgccggcctctcgagcagcatcaaggtgtcgacggcgatcaagatggacgtggtcgccaacacgttccccccgtcgcacggcgtgttccgcccggacctgcagcggttcatggtgcccatcgcgcggttcctggccaacaccgtgtcgccgctgctcgtcaacgtgtacccctacgtctcatacagggaaaacccgcgcgacatcagcctcaactacgccacgttccagccgggcaccacggtgagggacgacggcagcggcctcacctacaccaacctgttcaacgccatggtggacgccgtgtacgccgcgctggagaaggccggcacgccaaacgtccgcgtcgccgtgtcggagaccgggtggccgtcggcgggagggttcgccgcgacggcagagaacgcgatgaaccacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccgggccactggagacgtacgtgttcgccatgttcaacgagaaccagcagactggcgatgagaccaggaggcatttcggcctcttcaaccctgacaagacgccggcctacccgattacacgtatgccattatcgcatttcgtatgatatatcgtcgtatatatatccgcacgtacgttggtatgtagctaacgggtgcgtgcacgcgtgttggtaattttttgtagcttatcctcgtccggccgtgcaatccatcggcgtgtgctacggcatggtgggcaacgacctcccgtcacgtagcgaggtggtgcagatgtacgtgtccatgggcatcaatcggatgcgcatctacaatcccgacagggaggcgctggacgccctgcgcaactccggaatcgacctcatcctcgacgccggcggcttcgacacggtgtcctacctcgccgccagcgcctccaacgcggcgtcctgggtccatgacaacatcagcccctactacccggccgtcaacatcaagtacatagccgtcggcaacgaggtggtaggcggcaccacggagagcatcctcccggccatgcgcaacgtcaactccgcccttgccgcggccggcatcggcggcatcaaggtttccaccgcggtgaaatccgacgtgatcgccaactcttaccctccctccgccggcgtgttcgcgtatccctacatgaatggcgtagcccagtacctggcgagcaccggcgcgccgctgctggccaacgtgtacccctacttcgcctacgccggcaacccgcgcgagatcagcctcaactacgccaccttccagccgggcaccacggtgagggacgacggcaacgggctcacctacaccaacctgttcgacgccatggtggactgcatctacgccgcgctggagaaggccggcgccgggaacgtgagggtggtggtgtcggagagcgggtggccgtcggcggaagggttcggggcgagcatggacaacgcgagggcgtacaaccaggggctgatcgaccatgtcgggcgtggcacgcccaagaggcccggacagatggaggcgtacatatttgccatgttcaacgagaaccagaagaccggggctgccaccgagaggcattttggcctcttctaccctaacaggtcgccggtctatcagattgcctttccgaattagcagctgctaatacgagcatggatctgcaggcaatcgagtaatgcttcagtaatgttgtgttgggtgtattttaatgttctctgtgtgctgccactttacgctttgataatgcatgcatgcgcatgaataaaaacttttgaaggtttcttaacggttgacaacaacggtagtgtgcaagcttgcagtccgctgtgacggtgagtatttgcacacaatagggggaaattaaattggaaaacagagtaataaatattttatgag
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| CDS seq | atgggagctgtcaatggtgtttgctacggtgttcttggcgacaacctcccgtcgcggagcgaggtcgtgcagctgctcaagtcccaaggcatcggcgcgatgcgcatctactacccggacaaggaggccctcgacgcgctccgcggcagcggcatcgccgtcatcgtcgacgtcggcgacagcggcgcggtggccaacctcgccaacaacccctccgccgccgccgactgggtccgggacaacgtcgaggcctactggccgagcgtcatcatccgctacatcaccgtcggcaacgagctccccgccggcgacatgggcctcatcctcccggccatgcagaacgtgcacaaggccctcgtgtccgccggcctctcgagcagcatcaaggtgtcgacggcgatcaagatggacgtggtcgccaacacgttccccccgtcgcacggcgtgttccgcccggacctgcagcggttcatggtgcccatcgcgcggttcctggccaacaccgtgtcgccgctgctcgtcaacgtgtacccctacgtctcatacagggaaaacccgcgcgacatcagcctcaactacgccacgttccagccgggcaccacggtgagggacgacggcagcggcctcacctacaccaacctgttcaacgccatggtggacgccgtgtacgccgcgctggagaaggccggcacgccaaacgtccgcgtcgccgtgtcggagaccgggtggccgtcggcgggagggttcgccgcgacggcagagaacgcgatgaaccacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccgggccactggagacgtacgtgttcgccatgttcaacgagaaccagcagactggcgatgagaccaggaggcatttcggcctcttcaaccctgacaagacgccggcctacccgattacaccttatcctcgtccggccgtgcaatccatcggcgtgtgctacggcatggtgggcaacgacctcccgtcacgtagcgaggtggtgcagatgtacgtgtccatgggcatcaatcggatgcgcatctacaatcccgacagggaggcgctggacgccctgcgcaactccggaatcgacctcatcctcgacgccggcggcttcgacacggtgtcctacctcgccgccagcgcctccaacgcggcgtcctgggtccatgacaacatcagcccctactacccggccgtcaacatcaagtacatagccgtcggcaacgaggtggtaggcggcaccacggagagcatcctcccggccatgcgcaacgtcaactccgcccttgccgcggccggcatcggcggcatcaaggtttccaccgcggtgaaatccgacgtgatcgccaactcttaccctccctccgccggcgtgttcgcgtatccctacatgaatggcgtagcccagtacctggcgagcaccggcgcgccgctgctggccaacgtgtacccctacttcgcctacgccggcaacccgcgcgagatcagcctcaactacgccaccttccagccgggcaccacggtgagggacgacggcaacgggctcacctacaccaacctgttcgacgccatggtggactgcatctacgccgcgctggagaaggccggcgccgggaacgtgagggtggtggtgtcggagagcgggtggccgtcggcggaagggttcggggcgagcatggacaacgcgagggcgtacaaccaggggctgatcgaccatgtcgggcgtggcacgcccaagaggcccggacagatggaggcgtacatatttgccatgttcaacgagaaccagaagaccggggctgccaccgagaggcattttggcctcttctaccctaacaggtcgccggtctatcagattgcctttccgaattag
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| Protein seq | MGAVNGVCYGVLGDNLPSRSEVVQLLKSQGIGAMRIYYPDKEALDALRGSGIAVIVDVGDSGAVANLANNPSAAADWVRDNVEAYWPSVIIRYITVGNELPAGDMGLILPAMQNVHKALVSAGLSSSIKVSTAIKMDVVANTFPPSHGVFRPDLQRFMVPIARFLANTVSPLLVNVYPYVSYRENPRDISLNYATFQPGTTVRDDGSGLTYTNLFNAMVDAVYAALEKAGTPNVRVAVSETGWPSAGGFAATAENAMNHNQGVIDNVKNGTPKRPGPLETYVFAMFNENQQTGDETRRHFGLFNPDKTPAYPITPYPRPAVQSIGVCYGMVGNDLPSRSEVVQMYVSMGINRMRIYNPDREALDALRNSGIDLILDAGGFDTVSYLAASASNAASWVHDNISPYYPAVNIKYIAVGNEVVGGTTESILPAMRNVNSALAAAGIGGIKVSTAVKSDVIANSYPPSAGVFAYPYMNGVAQYLASTGAPLLANVYPYFAYAGNPREISLNYATFQPGTTVRDDGNGLTYTNLFDAMVDCIYAALEKAGAGNVRVVVSESGWPSAEGFGASMDNARAYNQGLIDHVGRGTPKRPGQMEAYIFAMFNENQKTGAATERHFGLFYPNRSPVYQIAFPN |
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| Function | Glucan endo-1,3-beta-glucosidase GV [UniProtKB/Swiss-Prot:Q02438] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0045950 | OsLima_01g0045950.01 | Chr01 | 43414523 | 43417019 | + | NAM | ||
| CDS seq | atgggagctgtcaatggtgtttgctacggtgttcttggcgacaacctcccgtcgcggagcgaggtcgtgcagctgctcaagtcccaaggcatcggcgcgatgcgcatctactacccggacaaggaggccctcgacgcgctccgcggcagcggcatcgccgtcatcgtcgacgtcggcgacagcggcgcggtggccaacctcgccaacaacccctccgccgccgccgactgggtccgggacaacgtcgaggcctactggccgagcgtcatcatccgctacatcaccgtcggcaacgagctccccgccggcgacatgggcctcatcctcccggccatgcagaacgtgcacaaggccctcgtgtccgccggcctctcgagcagcatcaaggtgtcgacggcgatcaagatggacgtggtcgccaacacgttccccccgtcgcacggcgtgttccgcccggacctgcagcggttcatggtgcccatcgcgcggttcctggccaacaccgtgtcgccgctgctcgtcaacgtgtacccctacgtctcatacagggaaaacccgcgcgacatcagcctcaactacgccacgttccagccgggcaccacggtgagggacgacggcagcggcctcacctacaccaacctgttcaacgccatggtggacgccgtgtacgccgcgctggagaaggccggcacgccaaacgtccgcgtcgccgtgtcggagaccgggtggccgtcggcgggagggttcgccgcgacggcagagaacgcgatgaaccacaaccagggcgtgatcgacaacgtcaagaacgggacgccgaagcggcccgggccactggagacgtacgtgttcgccatgttcaacgagaaccagcagactggcgatgagaccaggaggcatttcggcctcttcaaccctgacaagacgccggcctacccgattacaccttatcctcgtccggccgtgcaatccatcggcgtgtgctacggcatggtgggcaacgacctcccgtcacgtagcgaggtggtgcagatgtacgtgtccatgggcatcaatcggatgcgcatctacaatcccgacagggaggcgctggacgccctgcgcaactccggaatcgacctcatcctcgacgccggcggcttcgacacggtgtcctacctcgccgccagcgcctccaacgcggcgtcctgggtccatgacaacatcagcccctactacccggccgtcaacatcaagtacatagccgtcggcaacgaggtggtaggcggcaccacggagagcatcctcccggccatgcgcaacgtcaactccgcccttgccgcggccggcatcggcggcatcaaggtttccaccgcggtgaaatccgacgtgatcgccaactcttaccctccctccgccggcgtgttcgcgtatccctacatgaatggcgtagcccagtacctggcgagcaccggcgcgccgctgctggccaacgtgtacccctacttcgcctacgccggcaacccgcgcgagatcagcctcaactacgccaccttccagccgggcaccacggtgagggacgacggcaacgggctcacctacaccaacctgttcgacgccatggtggactgcatctacgccgcgctggagaaggccggcgccgggaacgtgagggtggtggtgtcggagagcgggtggccgtcggcggaagggttcggggcgagcatggacaacgcgagggcgtacaaccaggggctgatcgaccatgtcgggcgtggcacgcccaagaggcccggacagatggaggcgtacatatttgccatgttcaacgagaaccagaagaccggggctgccaccgagaggcattttggcctcttctaccctaacaggtcgccggtctatcagattgcctttccgaattag
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| Protein seq | MGAVNGVCYGVLGDNLPSRSEVVQLLKSQGIGAMRIYYPDKEALDALRGSGIAVIVDVGDSGAVANLANNPSAAADWVRDNVEAYWPSVIIRYITVGNELPAGDMGLILPAMQNVHKALVSAGLSSSIKVSTAIKMDVVANTFPPSHGVFRPDLQRFMVPIARFLANTVSPLLVNVYPYVSYRENPRDISLNYATFQPGTTVRDDGSGLTYTNLFNAMVDAVYAALEKAGTPNVRVAVSETGWPSAGGFAATAENAMNHNQGVIDNVKNGTPKRPGPLETYVFAMFNENQQTGDETRRHFGLFNPDKTPAYPITPYPRPAVQSIGVCYGMVGNDLPSRSEVVQMYVSMGINRMRIYNPDREALDALRNSGIDLILDAGGFDTVSYLAASASNAASWVHDNISPYYPAVNIKYIAVGNEVVGGTTESILPAMRNVNSALAAAGIGGIKVSTAVKSDVIANSYPPSAGVFAYPYMNGVAQYLASTGAPLLANVYPYFAYAGNPREISLNYATFQPGTTVRDDGNGLTYTNLFDAMVDCIYAALEKAGAGNVRVVVSESGWPSAEGFGASMDNARAYNQGLIDHVGRGTPKRPGQMEAYIFAMFNENQKTGAATERHFGLFYPNRSPVYQIAFPN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.375513 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0946500 | RBH | 0.444494 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g71810 | RBH | 0.300590 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0946700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046880 | SBH | 0.0 | 104.837570 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046410 | SBH | 0.0 | 17.660618 | 0.400837 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0046840 | SBH | 0.0 | 65.872742 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0046300 | RBH | 0.0 | 0.796859 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0045620 | RBH | 0.0 | 12.827074 | 1.487238 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0681300 | RBH | 3.442883 | 0.0150465 | 0.057027 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0045160 | RBH | 0.0 | 9.446524 | 0.219806 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0683500 | RBH | 7.4921425 | 0.025908 | 0.002766 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0045890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0045760 | RBH | 0.0 | 55.179989 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0046080 | RBH | 0.0 | 45.084187 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0045880 | RBH | 0.0 | 2.158639 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0045820 | SBH | 0.0 | 14.175983 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G046110 | RBH | 0.0 | 10.141820 | 0.300969 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0045830 | RBH | 0.0 | 0.000000 | 58.835526 |
