Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_01g0042060 | OGI:01114620 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr01:40219082-40222577 | ||||||||
| Gene Symbol | IG1, CRL1L3, OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2 | ||||||||||
| DNA seq | agatatcaaattcctccccttctcatttcctccccccatcttcgcaacatacagtactcaccatcttttggtggctctctcactctcctctctctctccctagaacagaaacccaaacaaaacggggcgaggtagtagctaggggggaaaagggagaagttttcggtttaaaaggaggagagaacggcccggccggaaGTggtggaaggcgaggaggaggagaacacggtgagatcaggagagaggagataccggccggcggaggcggcggcgcggcggcgcagggatagcggaaaaaaagatcgcgcctaaaaagggtacgtacgcagccatccaccgccggcgtcggatccgataacatctttgctttcttttatcctcctctctcctctttgTtttttttttctcttccttggttgtgtcttactactaagtctattattatagttcagtcacaCTctttttcttgctggttctgattgactacaaagctggggctattgatccaagaaaagcacatgccttgacgtttcttcagttagctagctagttagatgaagatattcagatggagtgtctcatacgaacaaactcttgcaatttcactgaggaaccaaagtttcagactttgttttacagttcggaaaataattcttttttttaacttgttttctcccttttgttttgaattgaaagaaattatgtcgtgattttggtccccttatttgttttcatgttttagatggaaggggcactaatgtatgtgcatttttagtagcttattttcttgtgctttttaggcagtgttctccatgtttagcaatacaataatacagatggttctttctgtttatgccctgctggttttctagcaacttccatagctttatgaggaaaagaaaaaatctatctatggtaatagagaacaatattaaaaagatcggctcttcttaccttttgcactttttctttcccaggcgaggaggatggcgtcatcgtcagcgtcgtccgtgccggcgccgtcggggtcggtgatcaccatagcgtcggcgtcggcgtcggcggcggcgaacacggcggcgtgcggcacggggtcgccgtgcgcggcgtgcaagttcctccgccgcaagtgccagcccgactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtccacgtgcaccgcgtcttcggcgcgagcaacgtgaccaagctgctgaacgagctgcacccctaccagcgcgaggacgccgtgaactcgctcgcctacgaggccgacatgcgcctccgcgaccccgtctacggctgcgtcgccatcatctccatcctccagcgcaacctccgccagctccagcaggacctcgcccgcgccaagttcgagctctccaagtaccagcaggtcagatcaatcacacacacacacgccgtagcttgtcttccatcgatcacgccgccacgtacatcggttacatttgtcgttgatgatgtgccgttcttggttcaggcggcggctgcggcggcggcggcttccgcgtcgacggggacgaataacgggccgcactcgatggcggagttcatcggcaacgcggtgccgaacggcgcgcagagcttcatcaacgtcgggcactcggcggcgctcgcctccgtcggtggcgcggcggcgtgcttcgggcaagagcagcagttctcggccgtccacatgctgtcgaggagctacgaaggggagcccatcgcgaggctcggcggcaacggcggctacgagttcgggtactcgacgtcgatggccggcggcgggcatatgtccgggctcggcgcgctcggcggcgcgccgttcttgaagtccggcatcgccggcagcgacgagaggcaaggcgccggccagtagttgggagcgcttgattcggcggttgttgtgatcgtctctgcatgtcaggtgtggcttagcattcttgcagtactgtggcactgtgctcttgtcttcttttagctactgttcttgagataacactattaattagctataagtctgagtgtgtgtgcagctagcgatgcatggagtataatacgatgttaagttgctaaatatggcgcattatgtggtgctaatttcgtgcttaatttgtcgctagccaatcagccatcctataattctcagaaactttgattgcaatccggcctttgtacttaacttaattcctctacacttgtgttcattaagaatccggcttctgttttcgcatcactgtttagctagcttttaatcgggcagtacttgttagagtgtccatgcatccactacttcacagtactatatatagtgcacgaaccttaattaccatcatgcatatcatggttacctgacaatgtttcgtgtaaaatttcccgatagaattattcgaaggacatccatagtttgacctcatgtgctgtagcatgccatggatgcacagctagcaatgatagcatgtcatgcctggtgtactgcaatgtactacaacttcacttgtgaaaagatgaaaaggttgagctagtttacagaaagtattttactgtaggtttagaaagctcctgccaaaagttgctgaaatcaatacgggtgttttctgtcaagtatcacaaaagcttactagcaaagcctgcagcaattcagttgaactagctctacttatatttcatgtcttgtgtatgcttgcaattttgcttgccaaatgcaatgaaagtgagtgaaaatgccgaggaatattaacatgcgtgcgttgctttgaaacaattttgaatatccatgctaatcaaaccagttaatttgggctggtctgggagcgctcaatttagcacttctagctgagtgtaaaaaggaatcgtctatgaaatcttctagctgagtctaaactatgtatcgcatatatttgtgtcttttgtattctcagtgatgatcatgtaaagcttgtgaaatgtgaatagatctctcctggtcttagtcttaaagtaaaggggatttagaaatgtttaggagtactttttctatatggtagggaaaaaagagctctggatatataaatacgtaatttgtaatttaacatgttgattcacttttaccattgttttgcaggttactgactaggaaattaaaattccctaagttctggaaattgaagcggtgaaaaggatcgtaaattaaggctcatgcttaggaggattgctcggtctattttacatgaagatcatgcgtgttcactctgttaatttgccttgtcaatgcttatcTttttctttcaatcgatcatccgcaatgtcgaacattttatttgtgccttgatctgttgctgggattgttgctgtactgtgtgcatgcttgtccctgattttagcacttggacggctaccttaattaatactactatattgatactgctcctatatagaggctagctagagtcgatgctgcagttgaccttcacattaatgttgaatctgtttgac
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| CDS seq | atggcgtcatcgtcagcgtcgtccgtgccggcgccgtcggggtcggtgatcaccatagcgtcggcgtcggcgtcggcggcggcgaacacggcggcgtgcggcacggggtcgccgtgcgcggcgtgcaagttcctccgccgcaagtgccagcccgactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtccacgtgcaccgcgtcttcggcgcgagcaacgtgaccaagctgctgaacgagctgcacccctaccagcgcgaggacgccgtgaactcgctcgcctacgaggccgacatgcgcctccgcgaccccgtctacggctgcgtcgccatcatctccatcctccagcgcaacctccgccagctccagcaggacctcgcccgcgccaagttcgagctctccaagtaccagcaggcggcggctgcggcggcggcggcttccgcgtcgacggggacgaataacgggccgcactcgatggcggagttcatcggcaacgcggtgccgaacggcgcgcagagcttcatcaacgtcgggcactcggcggcgctcgcctccgtcggtggcgcggcggcgtgcttcgggcaagagcagcagttctcggccgtccacatgctgtcgaggagctacgaaggggagcccatcgcgaggctcggcggcaacggcggctacgagttcgggtactcgacgtcgatggccggcggcgggcatatgtccgggctcggcgcgctcggcggcgcgccgttcttgaagtccggcatcgccggcagcgacgagaggcaaggcgccggccagtag
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| Protein seq | MASSSASSVPAPSGSVITIASASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASASTGTNNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQEQQFSAVHMLSRSYEGEPIARLGGNGGYEFGYSTSMAGGGHMSGLGALGGAPFLKSGIAGSDERQGAGQ |
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| Function | LOB domain-containing protein 6 [UniProtKB/Swiss-Prot:Q8LQH4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0042060 | OsLima_01g0042060.01 | Chr01 | 40219082 | 40222577 | + | NAM | ||
| CDS seq | atggcgtcatcgtcagcgtcgtccgtgccggcgccgtcggggtcggtgatcaccatagcgtcggcgtcggcgtcggcggcggcgaacacggcggcgtgcggcacggggtcgccgtgcgcggcgtgcaagttcctccgccgcaagtgccagcccgactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtccacgtgcaccgcgtcttcggcgcgagcaacgtgaccaagctgctgaacgagctgcacccctaccagcgcgaggacgccgtgaactcgctcgcctacgaggccgacatgcgcctccgcgaccccgtctacggctgcgtcgccatcatctccatcctccagcgcaacctccgccagctccagcaggacctcgcccgcgccaagttcgagctctccaagtaccagcaggcggcggctgcggcggcggcggcttccgcgtcgacggggacgaataacgggccgcactcgatggcggagttcatcggcaacgcggtgccgaacggcgcgcagagcttcatcaacgtcgggcactcggcggcgctcgcctccgtcggtggcgcggcggcgtgcttcgggcaagagcagcagttctcggccgtccacatgctgtcgaggagctacgaaggggagcccatcgcgaggctcggcggcaacggcggctacgagttcgggtactcgacgtcgatggccggcggcgggcatatgtccgggctcggcgcgctcggcggcgcgccgttcttgaagtccggcatcgccggcagcgacgagaggcaaggcgccggccagtag
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| Protein seq | MASSSASSVPAPSGSVITIASASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASASTGTNNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQEQQFSAVHMLSRSYEGEPIARLGGNGGYEFGYSTSMAGGGHMSGLGALGGAPFLKSGIAGSDERQGAGQ
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_01g0042060 | OsLima_01g0042060.02 | Chr01 | 40219082 | 40221282 | + | NAM | ||
| CDS seq | atggcgtcatcgtcagcgtcgtccgtgccggcgccgtcggggtcggtgatcaccatagcgtcggcgtcggcgtcggcggcggcgaacacggcggcgtgcggcacggggtcgccgtgcgcggcgtgcaagttcctccgccgcaagtgccagcccgactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtccacgtgcaccgcgtcttcggcgcgagcaacgtgaccaagctgctgaacgagctgcacccctaccagcgcgaggacgccgtgaactcgctcgcctacgaggccgacatgcgcctccgcgaccccgtctacggctgcgtcgccatcatctccatcctccagcgcaacctccgccagctccagcaggacctcgcccgcgccaagttcgagctctccaagtaccagcaggcggcggctgcggcggcggcggcttccgcgtcgacggggacgaataacgggccgcactcgatggcggagttcatcggcaacgcggtgccgaacggcgcgcagagcttcatcaacgtcgggcactcggcggcgctcgcctccgtcggtggcgcggcggcgtgcttcgggcaagagcagcagttctcggccgtccacatgctgtcgaggagctacgaaggggagcccatcgcgaggctcggcggcaacggcggctacgagttcgggtactcgacgtcgatggccggcggcgggcatatgtccgggctcggcgcgctcggcggcgcgccgttcttgaagtccggcatcgccggcagcgacgagaggcaaggcgccggccagtag
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| Protein seq | MASSSASSVPAPSGSVITIASASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASASTGTNNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQEQQFSAVHMLSRSYEGEPIARLGGNGGYEFGYSTSMAGGGHMSGLGALGGAPFLKSGIAGSDERQGAGQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0889400 | RBH | 0.161151 | 0.0 | 1.208444 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66590 | RBH | 0.097005 | 0.0 | 0.402939 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0889400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0043090 | RBH | 0.000000 | 0.0 | 0.410490 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0042670 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0043010 | RBH | 0.0 | 0.0 | 4.750143 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0042470 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0042090 | RBH | 0.638927 | 0.0 | 1.724483 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0636900 | RBH | 1.25771 | 0.014443 | 3.990199 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0041720 | RBH | 0.0 | 0.0 | 0.217958 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0637500 | RBH | 1.445543 | 0 | 11.878668 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017180 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0042010 | RBH | 0.117299 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0042290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0042220 | RBH | 0.0 | 0.0 | 0.121452 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0042080 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G042480 | RBH | 0.0 | 0.0 | 1.862106 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0042180 | RBH | 0.0 | 0.0 | 2.743571 |
