Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsZS97_01G0637500 OGI:01114620 | 16/16 Zhenshan 97 | ZS97RS3 | HZAU Chr01:40268681-40272310
Gene Symbol IG1, CRL1L3, OsCrll3, OsIG1, OsLBD1-9, LBD1-9, OsAS2, AS2
DNA seq

CTTCATTCCATTCTTTCTGCCCCCCTCTCCCTCTCTCTCTTCCTTAATGGCTACTCATCCAATAAAGAACACAGATATCAAATTCCTCCCCTTCTCATTTCCTCCCCCCATCTTCGCAACATACAGTACTCACCATCTTTTGGTGGCTCTCTCACTCTCCTCTCTCTCTCCCTAGAACAGAAACCCAAACAAAACGGGGCGAGGTAGTAGCTAGGGGGGAAAAGGGAGAAGTTTTCGGTTTAAAAGGAGGAGAGAACGGCCCGGCCGGAAGTGGTGGAAGGCGAGGAGGAGGAGAACACGGTGAGATCAGGAGAGAGGAGATACCGGCCGGCGGAGGCGGCGGCGCGGCGGCGCAGGGATAGCGGAAAAAAAGATCGCGCCTAAAAAGGGTACGTACGCAGCCATCCACCGCCGGCGTCGGATCCGATAACATCTTTGCTTTCTTTTATCCTCCTCTCTCCTCTTTGTTTTTTTTTTCTCTTCCTTGGTTGTGTCTTACTACTAAGTCTATTATTATAGTTCAGTCACACTCTTTTTCTTGCTGGTTCTGATTGACTACAAAGCTGGGGCTATTGATCCAAGAAAAGCACATGCCTTGACGTTTCTTCAGTTAGCTAGCTAGTTAGATGAAGATATTCAGATGGAGTGTCTCATACGAACAAACTCTTGCAATTTCACTGAGGAACCAAAGTTTCAGACTTTGTTTTACAGTTCGGAAAATAATTCTTTTTTTTAACTTGTTTTCTCCCTTTTGTTTTGAATTGAAAGAAATTATGTCGTGATTTTGGTCCCCTTATTTGTTTTCATGTTTTAGATGGAAGGGGCACTAATGTATGTGCATTTTTAGTAGCTTATTTTCTTGTGCTTTTTAGGCAGTGTTCTCCATGTTTAGCAATACAATAATACAGATGGTTCTTTCTGTTTATGCCCTGCTGGTTTTCTAGCAACTTCCATAGCTTTATGAGGAAAAGAAAAAATCTATCTATGGTAATAGAGAACAATATTAAAAAGATCGGCTCTTCTTACCTTTTGCACTTTTTCTTTCCCAGGCGAGGAGGATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGTCAGATCAATCACACACACACACGCCGTAGCTTGTCTTCCATCGATCACGCCGCCACGTACATCGGTTACATTTGTCGTTGATGATGTGCCGTTCTTGGTTCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAGTTGGGAGCGCTTGATTCGGCGGTTGTTGTGATCGTCTCTGCATGTCAGGTGTGGCTTAGCATTCTTGCAGTACTGTGGCACTGTGCTCTTGTCTTCTTTTAGCTACTGTTCTTGAGATAACACTATTAATTAGCTATAAGTCTGAGTGTGTGTGCAGCTAGCGATGCATGGAGTATAATACGATGTTAAGTTGCTAAATATGGCGCATTATGTGGTGCTAATTTCGTGCTTAATTTGTCGCTAGCCAATCAGCCATCCTATAATTCTCAGAAACTTTGATTGCAATCCGGCCTTTGTACTTAACTTAATTCCTCTACACTTGTGTTCATTAAGAATCCGGCTTCTGTTTTCGCATCACTGTTTAGCTAGCTTTTAATCGGGCAGTACTTGTTAGAGTGTCCATGCATCCACTACTTCACAGTACTATATATAGTGCACGAACCTTAATTACCATCATGCATATCATGGTTACCTGACAATGTTTCGTGTAAAATTTCCCGATAGAATTATTCGAAGGACATCCATAGTTTGACCTCATGTGCTGTAGCATGCCATGGATGCACAGCTAGCAATGATAGCATGTCATGCCTGGTGTACTGCAATGTACTACAACTTCACTTGTGAAAAGATGAAAAGGTTGAGCTAGTTTACAGAAAGTATTTTACTGTAGGTTTAGAAAGCTCCTGCCAAAAGTTGCTGAAATCAATACGGGTGTTTTCTGTCAAGTATCACAAAAGCTTACTAGCAAAGCCTGCAGCAATTCAGTTGAACTAGCTCTACTTATATTTCATGTCTTGTGTATGCTTGCAATTTTGCTTGCCAAATGCAATGAAAGTGAGTGAAAATGCCGAGGAATATTAACATGCGTGCGTTGCTTTGAAACAATTTTGAATATCCATGCTAATCAAACCAGTTAATTTGGGCTGGTCTGGGAGCGCTCAATTTAGCACTTCTAGCTGAGTGTAAAAAGGAATCGTCTATGAAATCTTCTAGCTGAGTCTAAACTATGTATCGCATATATTTGTGTCTTTTGTATTCTCAGTGATGATCATGTAAAGCTTGTGAAATGTGAATAGATCTCTCCTGGTCTTAGTCTTAAAGTAAAGGGGATTTAGAAATGTTTAGGAGTACTTTTTCTATATGGTAGGGAAAAAAGAGCTCTGGATATATAAATACGTAATTTGTAATTTAACATGTTGATTCACTTTTACCATTGTTTTGCAGGTTACTGACTAGGAAATTAAAATTCCCTAAGTTCTGGAAATTGAAGCGGTGAAAAGGATCGTAAATTAAGGCTCATGCTTAGGAGGATTGCTCGGTCTATTTTACATGAAGATCATGCGTGTTCACTCTGTTAATTTGCCTTGTCAATGCTTATCTTTTTCTTTCAATCGATCATCCGCAATGTCGAACATTTTATTTGTGCCTTGATCTGTTGCTGGGATTGTTGCTGTACTGTGTGCATGCTTGTCCCTGATTTTAGCACTTGGACGGCTACCTTAATTAATACTACTATATTGATACTGCTCCTATATAGAGGCTAGCTAGAGTCGATGCTGCAGTTGACCTTCACATTAATGTTGAATCTGTTTGACAAATCCGGTGCCGTATCTTGGCTTTGACATGGCATGCTGATGGCCTAGCTATATAGCTCCAC

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CDS seq

ATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGTCAGATCAATCACACACACACACGCCGTAGCTTGTCTTCCATCGATCACGCCGCCACGTACATCGGTTACATTTGTCGTTGATGATGTGCCGTTCTTGGTTCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAG

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Protein seq

MASSSASSVPAPSGSVITIASASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQVRSITHTHAVACLPSITPPRTSVTFVVDDVPFLVQAAAAAAAASASTGTNNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQEQQFSAVHMLSRSYEGEPIARLGGNGGYEFGYSTSMAGGGHMSGLGALGGAPFLKSGIAGSDERQGAGQ

Function LOB domain-containing protein 6 [UniProtKB/Swiss-Prot:Q8LQH4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsZS97_01G0637500 OsZS97_01T0637500.1 Chr01 40268681 40272310 + makerRMon
CDS seq

ATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAG

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Protein seq

MASSSASSVPAPSGSVITIASASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASASTGTNNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQEQQFSAVHMLSRSYEGEPIARLGGNGGYEFGYSTSMAGGGHMSGLGALGGAPFLKSGIAGSDERQGAGQ

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Gene Transcript Chromosome Start End Strand Source
OsZS97_01G0637500 OsZS97_01T0637500.2 Chr01 40268753 40272257 + makerRMon
CDS seq

ATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAG

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Protein seq

MASSSASSVPAPSGSVITIASASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASASTGTNNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQEQQFSAVHMLSRSYEGEPIARLGGNGGYEFGYSTSMAGGGHMSGLGALGGAPFLKSGIAGSDERQGAGQ

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Gene Transcript Chromosome Start End Strand Source
OsZS97_01G0637500 OsZS97_01T0637500.3 Chr01 40268753 40272251 + makerRMon
CDS seq

ATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGTCAGATCAATCACACACACACACGCCGTAGCTTGTCTTCCATCGATCACGCCGCCACGTACATCGGTTACATTTGTCGTTGATGATGTGCCGTTCTTGGTTCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAG

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Protein seq

MASSSASSVPAPSGSVITIASASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQVRSITHTHAVACLPSITPPRTSVTFVVDDVPFLVQAAAAAAAASASTGTNNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQEQQFSAVHMLSRSYEGEPIARLGGNGGYEFGYSTSMAGGGHMSGLGALGGAPFLKSGIAGSDERQGAGQ

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Gene Transcript Chromosome Start End Strand Source
OsZS97_01G0637500 OsZS97_01T0637500.4 Chr01 40269089 40272251 + makerRMon
CDS seq

ATGGCGTCATCGTCAGCGTCGTCCGTGCCGGCGCCGTCGGGGTCGGTGATCACCATAGCGTCGGCGTCGGCGTCGGCGGCGGCGAACACGGCGGCGTGCGGCACGGGGTCGCCGTGCGCGGCGTGCAAGTTCCTCCGCCGCAAGTGCCAGCCCGACTGCGTGTTCGCGCCCTACTTCCCGCCGGACAACCCGCAGAAGTTCGTCCACGTGCACCGCGTCTTCGGCGCGAGCAACGTGACCAAGCTGCTGAACGAGCTGCACCCCTACCAGCGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGACATGCGCCTCCGCGACCCCGTCTACGGCTGCGTCGCCATCATCTCCATCCTCCAGCGCAACCTCCGCCAGCTCCAGCAGGACCTCGCCCGCGCCAAGTTCGAGCTCTCCAAGTACCAGCAGGCGGCGGCTGCGGCGGCGGCGGCTTCCGCGTCGACGGGGACGAATAACGGGCCGCACTCGATGGCGGAGTTCATCGGCAACGCGGTGCCGAACGGCGCGCAGAGCTTCATCAACGTCGGGCACTCGGCGGCGCTCGCCTCCGTCGGTGGCGCGGCGGCGTGCTTCGGGCAAGAGCAGCAGTTCTCGGCCGTCCACATGCTGTCGAGGAGCTACGAAGGGGAGCCCATCGCGAGGCTCGGCGGCAACGGCGGCTACGAGTTCGGGTACTCGACGTCGATGGCCGGCGGCGGGCATATGTCCGGGCTCGGCGCGCTCGGCGGCGCGCCGTTCTTGAAGTCCGGCATCGCCGGCAGCGACGAGAGGCAAGGCGCCGGCCAGTAG

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Protein seq

MASSSASSVPAPSGSVITIASASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASASTGTNNGPHSMAEFIGNAVPNGAQSFINVGHSAALASVGGAAACFGQEQQFSAVHMLSRSYEGEPIARLGGNGGYEFGYSTSMAGGGHMSGLGALGGAPFLKSGIAGSDERQGAGQ

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 1.445543 0 11.878668

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0889400 RBH 0.161151 0.0 1.208444
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g66590 RBH 0.097005 0.0 0.402939
Nipponbare | IRGSP 1.0 | RAP-db Os01g0889400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0043090 RBH 0.000000 0.0 0.410490
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0042670 RBH 0.0 0.0 0.000000
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0043010 RBH 0.0 0.0 4.750143
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0042470 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0042090 RBH 0.638927 0.0 1.724483
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0636900 RBH 1.25771 0.014443 3.990199
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0041720 RBH 0.0 0.0 0.217958
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0321900 RBH 2.0955875 0 6.022084
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0042060 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0042010 RBH 0.117299 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0042290 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0042220 RBH 0.0 0.0 0.121452
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0042080 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G042480 RBH 0.0 0.0 1.862106
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0042180 RBH 0.0 0.0 2.743571
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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